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Genes within 1Mb (chr12:109582952:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000076248 UNG 485378 sc-eQTL 1.21e-01 -0.309 0.199 0.05 CD8_TEM L2
ENSG00000076513 ANKRD13A -416234 sc-eQTL 4.01e-01 0.184 0.219 0.05 CD8_TEM L2
ENSG00000076555 ACACB 466357 sc-eQTL 6.55e-01 -0.0929 0.208 0.05 CD8_TEM L2
ENSG00000084112 SSH1 725362 sc-eQTL 2.99e-02 0.47 0.215 0.05 CD8_TEM L2
ENSG00000110876 SELPLG 948993 sc-eQTL 2.94e-02 0.306 0.14 0.05 CD8_TEM L2
ENSG00000110880 CORO1C 851356 sc-eQTL 4.33e-01 -0.16 0.203 0.05 CD8_TEM L2
ENSG00000110906 KCTD10 105593 sc-eQTL 2.71e-01 -0.251 0.227 0.05 CD8_TEM L2
ENSG00000110921 MVK 9697 sc-eQTL 7.78e-01 -0.0608 0.215 0.05 CD8_TEM L2
ENSG00000111229 ARPC3 -867470 sc-eQTL 9.21e-02 -0.268 0.159 0.05 CD8_TEM L2
ENSG00000111231 GPN3 -886316 sc-eQTL 2.23e-01 0.269 0.219 0.05 CD8_TEM L2
ENSG00000111237 VPS29 -919159 sc-eQTL 3.40e-01 0.203 0.212 0.05 CD8_TEM L2
ENSG00000135093 USP30 559863 sc-eQTL 3.93e-02 0.434 0.209 0.05 CD8_TEM L2
ENSG00000139428 MMAB 9372 sc-eQTL 3.13e-01 0.226 0.224 0.05 CD8_TEM L2
ENSG00000139433 GLTP -297589 sc-eQTL 2.80e-01 0.241 0.223 0.05 CD8_TEM L2
ENSG00000139436 GIT2 -413437 sc-eQTL 8.98e-01 0.026 0.201 0.05 CD8_TEM L2
ENSG00000139437 TCHP -317312 sc-eQTL 3.29e-02 0.451 0.21 0.05 CD8_TEM L2
ENSG00000151148 UBE3B 105550 sc-eQTL 3.25e-01 -0.214 0.217 0.05 CD8_TEM L2
ENSG00000174437 ATP2A2 -697804 sc-eQTL 6.52e-01 0.0921 0.204 0.05 CD8_TEM L2
ENSG00000174456 C12orf76 -490682 sc-eQTL 8.92e-01 -0.0309 0.228 0.05 CD8_TEM L2
ENSG00000189046 ALKBH2 489321 sc-eQTL 9.05e-01 -0.0263 0.22 0.05 CD8_TEM L2
ENSG00000196510 ANAPC7 -820778 sc-eQTL 8.65e-01 -0.0342 0.201 0.05 CD8_TEM L2
ENSG00000204856 FAM216A -885463 sc-eQTL 5.72e-01 0.116 0.204 0.05 CD8_TEM L2
ENSG00000256262 USP30-AS1 529000 sc-eQTL 2.82e-01 0.237 0.22 0.05 CD8_TEM L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000135093 USP30 559863 eQTL 0.000126 -0.197 0.0512 0.00843 0.0 0.0324
ENSG00000151148 UBE3B 105550 eQTL 0.0839 0.078 0.0451 0.00126 0.0 0.0324
ENSG00000189046 ALKBH2 489464 eQTL 0.0409 -0.164 0.0802 0.0 0.0 0.0324

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina