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Genes within 1Mb (chr12:109582254:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000076248 UNG 484680 sc-eQTL 6.92e-01 0.0845 0.213 0.051 pDC L2
ENSG00000076513 ANKRD13A -416932 sc-eQTL 9.79e-01 -0.0065 0.243 0.051 pDC L2
ENSG00000076555 ACACB 465659 sc-eQTL 3.03e-01 0.225 0.218 0.051 pDC L2
ENSG00000084112 SSH1 724664 sc-eQTL 1.40e-01 -0.339 0.229 0.051 pDC L2
ENSG00000110876 SELPLG 948295 sc-eQTL 2.06e-03 0.463 0.148 0.051 pDC L2
ENSG00000110880 CORO1C 850658 sc-eQTL 7.18e-01 -0.0605 0.167 0.051 pDC L2
ENSG00000110906 KCTD10 104895 sc-eQTL 3.33e-01 -0.249 0.256 0.051 pDC L2
ENSG00000110921 MVK 8999 sc-eQTL 8.81e-01 0.0323 0.215 0.051 pDC L2
ENSG00000111229 ARPC3 -868168 sc-eQTL 1.52e-02 -0.33 0.134 0.051 pDC L2
ENSG00000111231 GPN3 -887014 sc-eQTL 4.04e-01 0.193 0.231 0.051 pDC L2
ENSG00000111237 VPS29 -919857 sc-eQTL 4.21e-02 0.415 0.203 0.051 pDC L2
ENSG00000122970 IFT81 -542081 sc-eQTL 1.59e-01 0.296 0.209 0.051 pDC L2
ENSG00000135093 USP30 559165 sc-eQTL 6.20e-01 0.112 0.225 0.051 pDC L2
ENSG00000139428 MMAB 8674 sc-eQTL 6.61e-01 0.0992 0.226 0.051 pDC L2
ENSG00000139433 GLTP -298287 sc-eQTL 7.02e-01 0.0815 0.212 0.051 pDC L2
ENSG00000139436 GIT2 -414135 sc-eQTL 6.39e-01 -0.0937 0.199 0.051 pDC L2
ENSG00000139437 TCHP -318010 sc-eQTL 9.80e-01 -0.00524 0.212 0.051 pDC L2
ENSG00000151148 UBE3B 104852 sc-eQTL 8.89e-01 -0.0342 0.244 0.051 pDC L2
ENSG00000174437 ATP2A2 -698502 sc-eQTL 7.46e-01 -0.0742 0.229 0.051 pDC L2
ENSG00000174456 C12orf76 -491380 sc-eQTL 4.34e-01 -0.198 0.253 0.051 pDC L2
ENSG00000189046 ALKBH2 488623 sc-eQTL 9.88e-02 0.361 0.217 0.051 pDC L2
ENSG00000196510 ANAPC7 -821476 sc-eQTL 1.88e-01 -0.297 0.224 0.051 pDC L2
ENSG00000204856 FAM216A -886161 sc-eQTL 7.70e-01 0.0597 0.204 0.051 pDC L2
ENSG00000256262 USP30-AS1 528302 sc-eQTL 6.84e-01 0.0826 0.202 0.051 pDC L2
ENSG00000257221 AC007569.1 953586 sc-eQTL 9.48e-01 -0.0138 0.213 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000110906 KCTD10 104895 eQTL 0.000837 0.156 0.0466 0.0 0.0 0.0334
ENSG00000183160 TMEM119 983934 eQTL 0.0162 -0.104 0.0431 0.0 0.0 0.0334
ENSG00000274598 AC087893.1 747870 eQTL 0.0421 -0.142 0.0698 0.0013 0.0 0.0334

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000110906 KCTD10 104895 4.46e-06 5.09e-06 6.48e-07 3.17e-06 1.64e-06 1.49e-06 4.48e-06 1.1e-06 5.13e-06 2.67e-06 5.32e-06 3.38e-06 7.53e-06 2.13e-06 1.41e-06 3.69e-06 1.92e-06 3.69e-06 1.41e-06 1.19e-06 3.02e-06 4.9e-06 4.13e-06 1.39e-06 6.72e-06 1.72e-06 2.25e-06 1.84e-06 4.53e-06 4.23e-06 2.83e-06 5.25e-07 6.92e-07 1.71e-06 2.13e-06 1.18e-06 9.05e-07 4.42e-07 1.07e-06 3.63e-07 3.62e-07 6.63e-06 4.73e-07 1.81e-07 5.94e-07 8.63e-07 9.92e-07 4.4e-07 5.14e-07
ENSG00000110921 \N 8999 3.69e-05 3.34e-05 6.45e-06 1.6e-05 6.21e-06 1.51e-05 4.66e-05 5.02e-06 3.31e-05 1.64e-05 4.06e-05 1.87e-05 5.08e-05 1.49e-05 7.23e-06 2.1e-05 1.86e-05 2.71e-05 8.23e-06 7.31e-06 1.65e-05 3.53e-05 3.3e-05 9.82e-06 4.66e-05 8.39e-06 1.57e-05 1.39e-05 3.39e-05 2.71e-05 2.16e-05 1.68e-06 2.83e-06 7.77e-06 1.2e-05 6.19e-06 3.46e-06 3.25e-06 5.2e-06 3.56e-06 1.7e-06 4e-05 3.8e-06 4.09e-07 2.71e-06 4.34e-06 4.33e-06 1.68e-06 1.53e-06
ENSG00000204856 \N -886527 2.74e-07 1.25e-07 4.91e-08 1.84e-07 9.16e-08 9.61e-08 1.44e-07 5.2e-08 1.44e-07 4.74e-08 1.62e-07 8.55e-08 1.41e-07 6.56e-08 6.02e-08 7.3e-08 3.9e-08 1.26e-07 5.82e-08 4.04e-08 1.04e-07 1.28e-07 1.34e-07 3.42e-08 1.4e-07 1.16e-07 1.07e-07 9.65e-08 1.05e-07 1.07e-07 9.7e-08 3.87e-08 3.56e-08 8.68e-08 8.76e-08 3.93e-08 5.02e-08 9.22e-08 7.23e-08 3.55e-08 4.64e-08 1.35e-07 5.22e-08 1.18e-08 3.83e-08 1.83e-08 1.22e-07 3.83e-09 4.94e-08