Genes within 1Mb (chr12:109562388:C:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000084112 SSH1 704798 eQTL 1.25e-02 -0.0381 0.0152 0.0 0.0 0.295
ENSG00000110906 KCTD10 85029 eQTL 1.50e-61 -0.286 0.016 0.0 0.00266 0.295
ENSG00000110921 MVK -10867 pQTL 1.73e-05 -0.0712 0.0165 0.0116 0.0111 0.301
ENSG00000110921 MVK -10867 eQTL 2.63e-16 -0.19 0.0228 0.0 0.0 0.295
ENSG00000111231 GPN3 -906880 eQTL 3.09e-04 0.082 0.0226 0.0 0.0 0.295
ENSG00000136003 ISCU 999787 eQTL 4.52e-02 -0.0527 0.0263 0.0 0.0 0.295
ENSG00000139428 MMAB -11192 eQTL 1.88e-04 -0.0783 0.0209 0.0 0.0 0.295
ENSG00000139436 GIT2 -434001 eQTL 2.53e-02 -0.0232 0.0103 0.00148 0.0 0.295
ENSG00000139437 TCHP -337886 eQTL 1.58e-06 -0.0814 0.0168 0.0 0.0 0.295
ENSG00000151148 UBE3B 84986 eQTL 1.33e-06 0.0804 0.0165 0.0 0.0 0.295


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000110906 KCTD10 85029 7.12e-06 1.04e-05 1.98e-06 8.36e-06 2.41e-06 3.97e-06 9.8e-06 2.09e-06 9.93e-06 5.57e-06 1.38e-05 5.28e-06 1.32e-05 3.83e-06 2.33e-06 6.1e-06 4.93e-06 8.94e-06 2.83e-06 2.84e-06 5.35e-06 9.61e-06 7.99e-06 3.38e-06 1.15e-05 3.09e-06 4.84e-06 4.8e-06 1.02e-05 8.74e-06 6.24e-06 1.04e-06 8.3e-07 2.75e-06 3.99e-06 2.82e-06 1.85e-06 2e-06 1.3e-06 1.42e-06 8.27e-07 1.17e-05 1.62e-06 3.33e-07 1.37e-06 1.22e-06 1.8e-06 6.88e-07 5.7e-07
ENSG00000110921 MVK -10867 4.21e-05 3.58e-05 7.01e-06 1.65e-05 6.98e-06 1.68e-05 5.04e-05 5.92e-06 3.76e-05 1.89e-05 4.55e-05 2.12e-05 5.48e-05 1.64e-05 8.33e-06 2.42e-05 2.1e-05 3.03e-05 9e-06 7.7e-06 1.94e-05 4.07e-05 3.6e-05 1.04e-05 5.19e-05 9.97e-06 1.73e-05 1.58e-05 3.69e-05 2.85e-05 2.44e-05 1.86e-06 3.37e-06 8.04e-06 1.34e-05 6.68e-06 3.69e-06 3.67e-06 5.61e-06 3.81e-06 1.78e-06 4.2e-05 4.42e-06 4.41e-07 2.87e-06 4.93e-06 4.73e-06 2.1e-06 1.45e-06
ENSG00000111231 GPN3 -906880 2.56e-07 1.11e-07 3.28e-08 1.7e-07 1.02e-07 9.14e-08 1.36e-07 5.24e-08 1.32e-07 3.99e-08 1.61e-07 7.4e-08 1.2e-07 6.1e-08 4.77e-08 7.76e-08 5.15e-08 1.06e-07 5.12e-08 2.88e-08 1.03e-07 1.31e-07 1.31e-07 5.19e-08 1.33e-07 1.03e-07 1.12e-07 8.49e-08 1.05e-07 1.1e-07 9.43e-08 3.29e-08 2.75e-08 8.09e-08 9.69e-08 4.19e-08 5.1e-08 8.48e-08 8.44e-08 3.74e-08 3.07e-08 1.42e-07 4.51e-08 1.61e-08 1.09e-07 1.83e-08 1.46e-07 4.82e-09 4.61e-08
ENSG00000136003 ISCU 999787 2.56e-07 1.11e-07 3.28e-08 1.68e-07 1.03e-07 9.14e-08 1.36e-07 5.29e-08 1.32e-07 3.99e-08 1.59e-07 7.4e-08 1.2e-07 6.1e-08 4.77e-08 7.4e-08 5.15e-08 1.02e-07 5.12e-08 2.88e-08 1.03e-07 1.31e-07 1.31e-07 5.19e-08 1.33e-07 1.03e-07 1.12e-07 8.49e-08 1.04e-07 1.09e-07 9.43e-08 3.29e-08 2.75e-08 8.09e-08 9.88e-08 4.26e-08 4.96e-08 8.48e-08 8.44e-08 3.8e-08 3.18e-08 1.42e-07 4.34e-08 2.79e-08 1.12e-07 1.86e-08 1.46e-07 4.96e-09 4.72e-08
ENSG00000139428 MMAB -11192 4.16e-05 3.58e-05 7.01e-06 1.65e-05 6.91e-06 1.67e-05 5.04e-05 5.86e-06 3.76e-05 1.89e-05 4.55e-05 2.1e-05 5.48e-05 1.63e-05 8.24e-06 2.39e-05 2.08e-05 3e-05 9e-06 7.67e-06 1.94e-05 4.03e-05 3.6e-05 1.04e-05 5.14e-05 9.82e-06 1.73e-05 1.57e-05 3.65e-05 2.81e-05 2.44e-05 1.8e-06 3.37e-06 7.93e-06 1.34e-05 6.68e-06 3.65e-06 3.55e-06 5.44e-06 3.75e-06 1.78e-06 4.2e-05 4.32e-06 4.37e-07 2.86e-06 4.96e-06 4.68e-06 2.07e-06 1.5e-06
ENSG00000139437 TCHP -337886 2.91e-07 2.56e-07 9.16e-08 4.4e-07 1.1e-07 8.21e-08 2.74e-07 6.12e-08 1.94e-07 9.72e-08 3.25e-07 1.05e-07 2.24e-07 7.95e-08 5.36e-08 7.98e-08 9.3e-08 2.15e-07 7.53e-08 5.35e-08 1.33e-07 1.56e-07 2.11e-07 3.07e-08 2.17e-07 1.39e-07 1.12e-07 1.28e-07 1.32e-07 2.89e-07 1.14e-07 4.22e-08 3.46e-08 9.3e-08 1.16e-07 1.09e-07 1.06e-07 8.76e-08 6.86e-08 8.61e-08 3.82e-08 2e-07 3.2e-08 1.3e-07 3.87e-08 1.84e-08 1.11e-07 1.88e-09 4.8e-08
ENSG00000151148 UBE3B 84986 7.08e-06 1.04e-05 1.98e-06 8.36e-06 2.41e-06 3.97e-06 9.87e-06 2.09e-06 9.93e-06 5.57e-06 1.38e-05 5.35e-06 1.32e-05 3.83e-06 2.33e-06 6.09e-06 4.93e-06 8.94e-06 2.83e-06 2.84e-06 5.35e-06 9.61e-06 7.99e-06 3.4e-06 1.14e-05 3.09e-06 4.84e-06 4.8e-06 1.03e-05 8.74e-06 6.24e-06 1.04e-06 8.28e-07 2.75e-06 3.99e-06 2.82e-06 1.87e-06 2.02e-06 1.3e-06 1.42e-06 8.36e-07 1.17e-05 1.62e-06 3.33e-07 1.37e-06 1.22e-06 1.8e-06 6.88e-07 5.7e-07