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Genes within 1Mb (chr12:109497600:C:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000075856 SART3 936200 sc-eQTL 1.48e-01 -0.33 0.227 0.051 pDC L2
ENSG00000076248 UNG 400026 sc-eQTL 6.92e-01 0.0845 0.213 0.051 pDC L2
ENSG00000076513 ANKRD13A -501586 sc-eQTL 9.79e-01 -0.0065 0.243 0.051 pDC L2
ENSG00000076555 ACACB 381005 sc-eQTL 3.03e-01 0.225 0.218 0.051 pDC L2
ENSG00000084112 SSH1 640010 sc-eQTL 1.40e-01 -0.339 0.229 0.051 pDC L2
ENSG00000110876 SELPLG 863641 sc-eQTL 2.06e-03 0.463 0.148 0.051 pDC L2
ENSG00000110880 CORO1C 766004 sc-eQTL 7.18e-01 -0.0605 0.167 0.051 pDC L2
ENSG00000110906 KCTD10 20241 sc-eQTL 3.33e-01 -0.249 0.256 0.051 pDC L2
ENSG00000110921 MVK -75655 sc-eQTL 8.81e-01 0.0323 0.215 0.051 pDC L2
ENSG00000111229 ARPC3 -952822 sc-eQTL 1.52e-02 -0.33 0.134 0.051 pDC L2
ENSG00000111231 GPN3 -971668 sc-eQTL 4.04e-01 0.193 0.231 0.051 pDC L2
ENSG00000122970 IFT81 -626735 sc-eQTL 1.59e-01 0.296 0.209 0.051 pDC L2
ENSG00000135093 USP30 474511 sc-eQTL 6.20e-01 0.112 0.225 0.051 pDC L2
ENSG00000136003 ISCU 935018 sc-eQTL 4.45e-01 -0.146 0.19 0.051 pDC L2
ENSG00000139428 MMAB -75980 sc-eQTL 6.61e-01 0.0992 0.226 0.051 pDC L2
ENSG00000139433 GLTP -382941 sc-eQTL 7.02e-01 0.0815 0.212 0.051 pDC L2
ENSG00000139436 GIT2 -498789 sc-eQTL 6.39e-01 -0.0937 0.199 0.051 pDC L2
ENSG00000139437 TCHP -402664 sc-eQTL 9.80e-01 -0.00524 0.212 0.051 pDC L2
ENSG00000151148 UBE3B 20198 sc-eQTL 8.89e-01 -0.0342 0.244 0.051 pDC L2
ENSG00000174437 ATP2A2 -783156 sc-eQTL 7.46e-01 -0.0742 0.229 0.051 pDC L2
ENSG00000174456 C12orf76 -576034 sc-eQTL 4.34e-01 -0.198 0.253 0.051 pDC L2
ENSG00000189046 ALKBH2 403969 sc-eQTL 9.88e-02 0.361 0.217 0.051 pDC L2
ENSG00000196510 ANAPC7 -906130 sc-eQTL 1.88e-01 -0.297 0.224 0.051 pDC L2
ENSG00000198855 FICD 982323 sc-eQTL 9.97e-01 0.000874 0.219 0.051 pDC L2
ENSG00000204856 FAM216A -970815 sc-eQTL 7.70e-01 0.0597 0.204 0.051 pDC L2
ENSG00000256262 USP30-AS1 443648 sc-eQTL 6.84e-01 0.0826 0.202 0.051 pDC L2
ENSG00000257221 AC007569.1 868932 sc-eQTL 9.48e-01 -0.0138 0.213 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000110906 KCTD10 20241 eQTL 0.000779 0.157 0.0467 0.0 0.0 0.0334
ENSG00000183160 TMEM119 899280 eQTL 0.0167 -0.103 0.0431 0.0 0.0 0.0334
ENSG00000274598 AC087893.1 663216 eQTL 0.0444 -0.141 0.0699 0.00126 0.0 0.0334

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000110906 KCTD10 20241 2.89e-05 2.95e-05 6e-06 1.53e-05 5.44e-06 1.34e-05 4.17e-05 4.2e-06 2.82e-05 1.36e-05 3.38e-05 1.55e-05 4.46e-05 1.27e-05 6.33e-06 1.72e-05 1.55e-05 2.33e-05 7.83e-06 7.1e-06 1.41e-05 2.96e-05 2.89e-05 9.89e-06 4.15e-05 7.34e-06 1.27e-05 1.15e-05 2.94e-05 3.06e-05 1.76e-05 1.63e-06 2.8e-06 7.41e-06 1.12e-05 6.2e-06 3.39e-06 3.26e-06 4.95e-06 3.6e-06 1.79e-06 3.45e-05 3.39e-06 4.43e-07 2.49e-06 3.72e-06 3.96e-06 1.58e-06 1.5e-06
ENSG00000110921 \N -75655 1.21e-05 1.38e-05 2.57e-06 8.31e-06 2.38e-06 6.12e-06 1.87e-05 2.16e-06 1.4e-05 6.44e-06 1.79e-05 6.86e-06 2.5e-05 5.14e-06 4.14e-06 9e-06 6.8e-06 1.16e-05 3.55e-06 3.53e-06 6.88e-06 1.28e-05 1.29e-05 4.25e-06 2.32e-05 4.73e-06 7.46e-06 5.65e-06 1.43e-05 1.46e-05 8.7e-06 1.23e-06 1.48e-06 3.85e-06 6.01e-06 3.58e-06 1.78e-06 2.39e-06 2.2e-06 1.69e-06 1.28e-06 1.86e-05 2.23e-06 2.81e-07 1.02e-06 1.85e-06 1.82e-06 7.39e-07 7.09e-07
ENSG00000204856 \N -971181 2.69e-07 1.25e-07 4.91e-08 1.97e-07 8.83e-08 9.91e-08 1.61e-07 5.37e-08 1.45e-07 4.94e-08 1.55e-07 8.59e-08 1.79e-07 7.37e-08 6.25e-08 7.36e-08 3.93e-08 1.27e-07 5.36e-08 4.2e-08 1.19e-07 1.27e-07 1.44e-07 3.49e-08 1.55e-07 1.16e-07 1.07e-07 9.36e-08 1.05e-07 9.88e-08 9.92e-08 3.68e-08 3.56e-08 8.11e-08 3.52e-08 3.04e-08 5.37e-08 8.71e-08 6.54e-08 3.55e-08 3.89e-08 1.4e-07 5.27e-08 7.23e-09 4.92e-08 1.99e-08 1.22e-07 3.83e-09 4.79e-08