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Genes within 1Mb (chr12:109386189:G:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000075856 SART3 824789 sc-eQTL 2.09e-01 -0.3 0.238 0.054 B_Activated L2
ENSG00000076248 UNG 288615 sc-eQTL 8.63e-01 0.0361 0.21 0.054 B_Activated L2
ENSG00000076513 ANKRD13A -612997 sc-eQTL 5.69e-01 -0.116 0.203 0.054 B_Activated L2
ENSG00000076555 ACACB 269594 sc-eQTL 6.98e-01 -0.073 0.188 0.054 B_Activated L2
ENSG00000084112 SSH1 528599 sc-eQTL 4.61e-01 -0.159 0.215 0.054 B_Activated L2
ENSG00000110876 SELPLG 752230 sc-eQTL 7.72e-01 -0.0578 0.199 0.054 B_Activated L2
ENSG00000110880 CORO1C 654593 sc-eQTL 4.20e-02 -0.475 0.232 0.054 B_Activated L2
ENSG00000110906 KCTD10 -91170 sc-eQTL 3.84e-01 -0.193 0.221 0.054 B_Activated L2
ENSG00000110921 MVK -187066 sc-eQTL 1.63e-01 -0.29 0.207 0.054 B_Activated L2
ENSG00000122970 IFT81 -738146 sc-eQTL 2.37e-01 -0.2 0.169 0.054 B_Activated L2
ENSG00000135093 USP30 363100 sc-eQTL 3.76e-01 -0.183 0.206 0.054 B_Activated L2
ENSG00000136003 ISCU 823607 sc-eQTL 4.56e-01 0.163 0.218 0.054 B_Activated L2
ENSG00000139428 MMAB -187391 sc-eQTL 5.10e-01 -0.143 0.217 0.054 B_Activated L2
ENSG00000139433 GLTP -494352 sc-eQTL 5.36e-02 0.474 0.244 0.054 B_Activated L2
ENSG00000139436 GIT2 -610200 sc-eQTL 4.36e-01 -0.178 0.228 0.054 B_Activated L2
ENSG00000139437 TCHP -514075 sc-eQTL 4.71e-01 0.157 0.218 0.054 B_Activated L2
ENSG00000151148 UBE3B -91213 sc-eQTL 6.73e-01 -0.0984 0.233 0.054 B_Activated L2
ENSG00000174437 ATP2A2 -894567 sc-eQTL 2.69e-01 -0.241 0.218 0.054 B_Activated L2
ENSG00000174456 C12orf76 -687445 sc-eQTL 4.61e-02 0.474 0.236 0.054 B_Activated L2
ENSG00000189046 ALKBH2 292558 sc-eQTL 7.06e-01 0.0839 0.222 0.054 B_Activated L2
ENSG00000198855 FICD 870912 sc-eQTL 4.49e-01 -0.15 0.198 0.054 B_Activated L2
ENSG00000256262 USP30-AS1 332237 sc-eQTL 3.95e-01 0.178 0.209 0.054 B_Activated L2
ENSG00000257221 AC007569.1 757521 sc-eQTL 6.58e-01 0.106 0.239 0.054 B_Activated L2
ENSG00000075856 SART3 824789 sc-eQTL 2.17e-01 -0.332 0.267 0.052 PB L2
ENSG00000076248 UNG 288615 sc-eQTL 5.81e-01 -0.134 0.243 0.052 PB L2
ENSG00000076513 ANKRD13A -612997 sc-eQTL 1.37e-01 -0.304 0.203 0.052 PB L2
ENSG00000076555 ACACB 269594 sc-eQTL 6.48e-01 -0.103 0.225 0.052 PB L2
ENSG00000084112 SSH1 528599 sc-eQTL 6.01e-01 0.131 0.25 0.052 PB L2
ENSG00000110876 SELPLG 752230 sc-eQTL 5.53e-01 -0.0978 0.164 0.052 PB L2
ENSG00000110880 CORO1C 654593 sc-eQTL 4.80e-01 0.174 0.246 0.052 PB L2
ENSG00000110906 KCTD10 -91170 sc-eQTL 2.86e-01 0.281 0.262 0.052 PB L2
ENSG00000110921 MVK -187066 sc-eQTL 2.25e-01 -0.299 0.245 0.052 PB L2
ENSG00000122970 IFT81 -738146 sc-eQTL 2.00e-01 -0.251 0.194 0.052 PB L2
ENSG00000135093 USP30 363100 sc-eQTL 2.32e-01 0.291 0.242 0.052 PB L2
ENSG00000136003 ISCU 823607 sc-eQTL 9.26e-01 -0.0172 0.186 0.052 PB L2
ENSG00000139428 MMAB -187391 sc-eQTL 5.78e-01 -0.132 0.237 0.052 PB L2
ENSG00000139433 GLTP -494352 sc-eQTL 3.73e-01 -0.232 0.259 0.052 PB L2
ENSG00000139436 GIT2 -610200 sc-eQTL 3.04e-03 0.77 0.254 0.052 PB L2
ENSG00000139437 TCHP -514075 sc-eQTL 5.60e-02 -0.462 0.239 0.052 PB L2
ENSG00000151148 UBE3B -91213 sc-eQTL 1.50e-01 0.36 0.248 0.052 PB L2
ENSG00000174437 ATP2A2 -894567 sc-eQTL 5.54e-01 0.0959 0.162 0.052 PB L2
ENSG00000174456 C12orf76 -687445 sc-eQTL 2.95e-02 -0.521 0.236 0.052 PB L2
ENSG00000189046 ALKBH2 292558 sc-eQTL 2.85e-01 -0.274 0.255 0.052 PB L2
ENSG00000198855 FICD 870912 sc-eQTL 9.65e-02 -0.305 0.182 0.052 PB L2
ENSG00000256262 USP30-AS1 332237 sc-eQTL 2.06e-02 -0.547 0.233 0.052 PB L2
ENSG00000257221 AC007569.1 757521 sc-eQTL 4.42e-01 0.172 0.223 0.052 PB L2
ENSG00000075856 SART3 824789 sc-eQTL 8.80e-01 0.032 0.211 0.05 Pro_T L2
ENSG00000076248 UNG 288615 sc-eQTL 2.67e-02 0.346 0.155 0.05 Pro_T L2
ENSG00000076513 ANKRD13A -612997 sc-eQTL 7.37e-01 0.0665 0.198 0.05 Pro_T L2
ENSG00000076555 ACACB 269594 sc-eQTL 9.53e-01 0.0112 0.191 0.05 Pro_T L2
ENSG00000084112 SSH1 528599 sc-eQTL 6.04e-01 0.101 0.195 0.05 Pro_T L2
ENSG00000110876 SELPLG 752230 sc-eQTL 8.48e-02 -0.25 0.144 0.05 Pro_T L2
ENSG00000110880 CORO1C 654593 sc-eQTL 1.22e-03 -0.473 0.144 0.05 Pro_T L2
ENSG00000110906 KCTD10 -91170 sc-eQTL 9.93e-01 0.0018 0.206 0.05 Pro_T L2
ENSG00000110921 MVK -187066 sc-eQTL 3.69e-01 0.183 0.203 0.05 Pro_T L2
ENSG00000135093 USP30 363100 sc-eQTL 4.36e-01 -0.163 0.208 0.05 Pro_T L2
ENSG00000136003 ISCU 823607 sc-eQTL 2.38e-01 -0.184 0.156 0.05 Pro_T L2
ENSG00000139428 MMAB -187391 sc-eQTL 2.02e-01 0.254 0.198 0.05 Pro_T L2
ENSG00000139433 GLTP -494352 sc-eQTL 3.47e-01 0.189 0.2 0.05 Pro_T L2
ENSG00000139436 GIT2 -610200 sc-eQTL 7.08e-01 0.0787 0.21 0.05 Pro_T L2
ENSG00000139437 TCHP -514075 sc-eQTL 1.01e-01 0.35 0.212 0.05 Pro_T L2
ENSG00000151148 UBE3B -91213 sc-eQTL 1.71e-01 -0.297 0.216 0.05 Pro_T L2
ENSG00000174437 ATP2A2 -894567 sc-eQTL 3.87e-01 -0.126 0.146 0.05 Pro_T L2
ENSG00000174456 C12orf76 -687445 sc-eQTL 7.74e-02 0.358 0.202 0.05 Pro_T L2
ENSG00000189046 ALKBH2 292558 sc-eQTL 8.75e-01 -0.031 0.196 0.05 Pro_T L2
ENSG00000198855 FICD 870912 sc-eQTL 6.64e-01 0.0817 0.188 0.05 Pro_T L2
ENSG00000256262 USP30-AS1 332237 sc-eQTL 1.79e-03 -0.591 0.187 0.05 Pro_T L2
ENSG00000257221 AC007569.1 757521 sc-eQTL 5.21e-01 0.0611 0.0951 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000110906 KCTD10 -91170 eQTL 0.00144 -0.136 0.0426 0.0 0.0 0.0417
ENSG00000174456 C12orf76 -687445 eQTL 2.04e-02 -0.113 0.0488 0.0 0.0 0.0417

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina