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Genes within 1Mb (chr12:109321290:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000075856 SART3 759890 sc-eQTL 9.31e-01 0.0213 0.244 0.051 B_Activated L2
ENSG00000076248 UNG 223716 sc-eQTL 6.67e-02 0.392 0.212 0.051 B_Activated L2
ENSG00000076513 ANKRD13A -677896 sc-eQTL 9.40e-01 -0.0157 0.208 0.051 B_Activated L2
ENSG00000076555 ACACB 204695 sc-eQTL 9.65e-01 0.00834 0.192 0.051 B_Activated L2
ENSG00000084112 SSH1 463700 sc-eQTL 8.28e-01 -0.0478 0.22 0.051 B_Activated L2
ENSG00000110876 SELPLG 687331 sc-eQTL 4.45e-01 0.156 0.203 0.051 B_Activated L2
ENSG00000110880 CORO1C 589694 sc-eQTL 1.23e-01 -0.369 0.239 0.051 B_Activated L2
ENSG00000110906 KCTD10 -156069 sc-eQTL 3.66e-03 -0.651 0.221 0.051 B_Activated L2
ENSG00000110921 MVK -251965 sc-eQTL 7.06e-01 0.0806 0.213 0.051 B_Activated L2
ENSG00000122970 IFT81 -803045 sc-eQTL 3.50e-01 0.162 0.173 0.051 B_Activated L2
ENSG00000135093 USP30 298201 sc-eQTL 7.53e-01 0.0665 0.211 0.051 B_Activated L2
ENSG00000136003 ISCU 758708 sc-eQTL 6.11e-01 0.113 0.223 0.051 B_Activated L2
ENSG00000139428 MMAB -252290 sc-eQTL 9.66e-01 0.00941 0.222 0.051 B_Activated L2
ENSG00000139433 GLTP -559251 sc-eQTL 8.06e-01 0.0621 0.252 0.051 B_Activated L2
ENSG00000139436 GIT2 -675099 sc-eQTL 9.03e-01 0.0284 0.233 0.051 B_Activated L2
ENSG00000139437 TCHP -578974 sc-eQTL 8.95e-01 0.0294 0.223 0.051 B_Activated L2
ENSG00000151148 UBE3B -156112 sc-eQTL 9.14e-01 0.0256 0.238 0.051 B_Activated L2
ENSG00000174437 ATP2A2 -959466 sc-eQTL 5.84e-01 0.122 0.223 0.051 B_Activated L2
ENSG00000174456 C12orf76 -752344 sc-eQTL 6.30e-01 -0.118 0.244 0.051 B_Activated L2
ENSG00000189046 ALKBH2 227659 sc-eQTL 1.59e-01 -0.319 0.226 0.051 B_Activated L2
ENSG00000198855 FICD 806013 sc-eQTL 7.24e-01 -0.0716 0.202 0.051 B_Activated L2
ENSG00000256262 USP30-AS1 267338 sc-eQTL 2.39e-01 -0.252 0.213 0.051 B_Activated L2
ENSG00000257221 AC007569.1 692622 sc-eQTL 4.72e-01 -0.176 0.244 0.051 B_Activated L2
ENSG00000075856 SART3 759890 sc-eQTL 3.84e-01 0.179 0.205 0.054 cDC L2
ENSG00000076248 UNG 223716 sc-eQTL 5.68e-01 0.102 0.178 0.054 cDC L2
ENSG00000076513 ANKRD13A -677896 sc-eQTL 1.27e-01 0.291 0.189 0.054 cDC L2
ENSG00000076555 ACACB 204695 sc-eQTL 3.21e-01 -0.187 0.187 0.054 cDC L2
ENSG00000084112 SSH1 463700 sc-eQTL 3.84e-01 0.185 0.212 0.054 cDC L2
ENSG00000110876 SELPLG 687331 sc-eQTL 6.95e-01 -0.0621 0.158 0.054 cDC L2
ENSG00000110880 CORO1C 589694 sc-eQTL 1.04e-01 -0.306 0.187 0.054 cDC L2
ENSG00000110906 KCTD10 -156069 sc-eQTL 6.85e-01 -0.0901 0.222 0.054 cDC L2
ENSG00000110921 MVK -251965 sc-eQTL 9.25e-01 -0.0194 0.205 0.054 cDC L2
ENSG00000122970 IFT81 -803045 sc-eQTL 1.15e-01 0.278 0.175 0.054 cDC L2
ENSG00000135093 USP30 298201 sc-eQTL 1.80e-01 0.27 0.201 0.054 cDC L2
ENSG00000136003 ISCU 758708 sc-eQTL 7.98e-01 0.0546 0.213 0.054 cDC L2
ENSG00000139428 MMAB -252290 sc-eQTL 6.74e-01 -0.0884 0.21 0.054 cDC L2
ENSG00000139433 GLTP -559251 sc-eQTL 3.58e-01 -0.177 0.193 0.054 cDC L2
ENSG00000139436 GIT2 -675099 sc-eQTL 7.26e-01 0.0609 0.174 0.054 cDC L2
ENSG00000139437 TCHP -578974 sc-eQTL 3.91e-01 -0.186 0.216 0.054 cDC L2
ENSG00000151148 UBE3B -156112 sc-eQTL 6.16e-01 0.104 0.208 0.054 cDC L2
ENSG00000174437 ATP2A2 -959466 sc-eQTL 1.61e-02 -0.433 0.178 0.054 cDC L2
ENSG00000174456 C12orf76 -752344 sc-eQTL 7.73e-01 -0.0627 0.216 0.054 cDC L2
ENSG00000174600 CMKLR1 981973 sc-eQTL 8.58e-01 -0.0295 0.165 0.054 cDC L2
ENSG00000189046 ALKBH2 227659 sc-eQTL 9.13e-01 0.0232 0.211 0.054 cDC L2
ENSG00000198855 FICD 806013 sc-eQTL 5.56e-01 -0.104 0.177 0.054 cDC L2
ENSG00000256262 USP30-AS1 267338 sc-eQTL 2.13e-03 0.53 0.17 0.054 cDC L2
ENSG00000257221 AC007569.1 692622 sc-eQTL 7.80e-01 -0.041 0.146 0.054 cDC L2
ENSG00000075856 SART3 759890 sc-eQTL 7.13e-01 -0.0827 0.224 0.051 pDC L2
ENSG00000076248 UNG 223716 sc-eQTL 2.31e-02 -0.472 0.206 0.051 pDC L2
ENSG00000076513 ANKRD13A -677896 sc-eQTL 1.35e-01 -0.356 0.237 0.051 pDC L2
ENSG00000076555 ACACB 204695 sc-eQTL 4.74e-01 0.154 0.215 0.051 pDC L2
ENSG00000084112 SSH1 463700 sc-eQTL 9.69e-01 0.00873 0.226 0.051 pDC L2
ENSG00000110876 SELPLG 687331 sc-eQTL 8.53e-01 0.0277 0.15 0.051 pDC L2
ENSG00000110880 CORO1C 589694 sc-eQTL 1.21e-01 0.254 0.163 0.051 pDC L2
ENSG00000110906 KCTD10 -156069 sc-eQTL 9.02e-01 -0.0313 0.253 0.051 pDC L2
ENSG00000110921 MVK -251965 sc-eQTL 2.75e-01 0.231 0.211 0.051 pDC L2
ENSG00000122970 IFT81 -803045 sc-eQTL 5.36e-01 -0.128 0.207 0.051 pDC L2
ENSG00000135093 USP30 298201 sc-eQTL 2.92e-01 0.233 0.221 0.051 pDC L2
ENSG00000136003 ISCU 758708 sc-eQTL 8.10e-01 0.0453 0.188 0.051 pDC L2
ENSG00000139428 MMAB -252290 sc-eQTL 7.84e-01 0.0609 0.222 0.051 pDC L2
ENSG00000139433 GLTP -559251 sc-eQTL 3.68e-01 0.188 0.208 0.051 pDC L2
ENSG00000139436 GIT2 -675099 sc-eQTL 7.82e-01 -0.0544 0.196 0.051 pDC L2
ENSG00000139437 TCHP -578974 sc-eQTL 5.67e-01 0.119 0.208 0.051 pDC L2
ENSG00000151148 UBE3B -156112 sc-eQTL 2.58e-01 -0.271 0.239 0.051 pDC L2
ENSG00000174437 ATP2A2 -959466 sc-eQTL 8.80e-01 0.0341 0.225 0.051 pDC L2
ENSG00000174456 C12orf76 -752344 sc-eQTL 7.49e-01 -0.0798 0.249 0.051 pDC L2
ENSG00000174600 CMKLR1 981973 sc-eQTL 7.48e-01 0.0494 0.153 0.051 pDC L2
ENSG00000189046 ALKBH2 227659 sc-eQTL 6.79e-01 -0.0892 0.215 0.051 pDC L2
ENSG00000198855 FICD 806013 sc-eQTL 6.45e-01 -0.0993 0.215 0.051 pDC L2
ENSG00000256262 USP30-AS1 267338 sc-eQTL 3.65e-01 -0.181 0.199 0.051 pDC L2
ENSG00000257221 AC007569.1 692622 sc-eQTL 7.84e-01 -0.0575 0.21 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000076248 UNG 223716 eQTL 0.0465 0.0761 0.0382 0.0 0.0 0.0442
ENSG00000277595 AC007546.1 -710955 eQTL 8.35e-06 -0.168 0.0375 0.0 0.0 0.0442

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000277595 AC007546.1 -710955 3.21e-07 1.51e-07 6.57e-08 2.2e-07 1.05e-07 8.75e-08 2.24e-07 5.84e-08 1.85e-07 1.03e-07 1.66e-07 1.48e-07 2.29e-07 8.07e-08 6.12e-08 9.6e-08 5.42e-08 1.91e-07 7.36e-08 6.02e-08 1.24e-07 1.76e-07 1.68e-07 4.17e-08 2.09e-07 1.51e-07 1.31e-07 1.12e-07 1.37e-07 1.33e-07 1.14e-07 4.43e-08 3.65e-08 9.52e-08 4.78e-08 3.36e-08 3.7e-08 7.25e-08 6.33e-08 5.96e-08 4.36e-08 1.59e-07 3.13e-08 1.19e-08 3.3e-08 6.53e-09 7.52e-08 0.0 4.72e-08