Genes within 1Mb (chr12:109151963:C:T):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000075856 SART3 590563 sc-eQTL 7.46e-01 -0.0808 0.249 0.056 PB L2
ENSG00000076248 UNG 54389 sc-eQTL 8.27e-01 0.0493 0.225 0.056 PB L2
ENSG00000076513 ANKRD13A -847223 sc-eQTL 3.97e-01 0.161 0.189 0.056 PB L2
ENSG00000076555 ACACB 35368 sc-eQTL 4.50e-01 0.158 0.208 0.056 PB L2
ENSG00000084112 SSH1 294373 sc-eQTL 3.72e-01 0.207 0.231 0.056 PB L2
ENSG00000110876 SELPLG 518004 sc-eQTL 3.33e-01 0.147 0.151 0.056 PB L2
ENSG00000110880 CORO1C 420367 sc-eQTL 9.08e-01 0.0264 0.228 0.056 PB L2
ENSG00000110906 KCTD10 -325396 sc-eQTL 5.80e-01 -0.135 0.243 0.056 PB L2
ENSG00000110921 MVK -421292 sc-eQTL 7.96e-01 0.059 0.228 0.056 PB L2
ENSG00000122970 IFT81 -972372 sc-eQTL 3.00e-01 -0.187 0.18 0.056 PB L2
ENSG00000135093 USP30 128874 sc-eQTL 2.67e-01 -0.25 0.224 0.056 PB L2
ENSG00000136003 ISCU 589381 sc-eQTL 4.08e-01 0.142 0.171 0.056 PB L2
ENSG00000139428 MMAB -421617 sc-eQTL 6.13e-01 -0.111 0.219 0.056 PB L2
ENSG00000139433 GLTP -728578 sc-eQTL 5.85e-01 0.131 0.24 0.056 PB L2
ENSG00000139436 GIT2 -844426 sc-eQTL 2.05e-01 0.31 0.243 0.056 PB L2
ENSG00000139437 TCHP -748301 sc-eQTL 1.17e-01 0.351 0.222 0.056 PB L2
ENSG00000151148 UBE3B -325439 sc-eQTL 4.11e-01 -0.19 0.231 0.056 PB L2
ENSG00000174456 C12orf76 -921671 sc-eQTL 3.18e-01 0.223 0.222 0.056 PB L2
ENSG00000189046 ALKBH2 58332 sc-eQTL 6.30e-01 0.114 0.237 0.056 PB L2
ENSG00000198855 FICD 636686 sc-eQTL 8.10e-01 0.0411 0.17 0.056 PB L2
ENSG00000256262 USP30-AS1 98011 sc-eQTL 6.98e-01 -0.0855 0.22 0.056 PB L2
ENSG00000257221 AC007569.1 523295 sc-eQTL 5.17e-01 -0.134 0.206 0.056 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000076555 ACACB 35368 eQTL 2.19e-06 -0.277 0.0582 0.0 0.0 0.0407
ENSG00000135093 USP30 128874 eQTL 0.0179 -0.105 0.0443 0.0 0.0 0.0407
ENSG00000139428 MMAB -421617 eQTL 0.0931 0.082 0.0488 0.00149 0.0 0.0407
ENSG00000256262 USP30-AS1 98011 eQTL 0.000577 0.135 0.039 0.0 0.0 0.0407


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000076555 ACACB 35368 1.46e-05 2.05e-05 2e-06 8.67e-06 2.42e-06 6.28e-06 2.07e-05 2.46e-06 1.41e-05 6.07e-06 1.99e-05 6.84e-06 2.87e-05 5.81e-06 4.27e-06 7.69e-06 8.11e-06 1.09e-05 3.61e-06 3.14e-06 6.47e-06 1.28e-05 1.33e-05 3.4e-06 2.32e-05 4.26e-06 6.97e-06 5.28e-06 1.48e-05 1.19e-05 1.15e-05 1e-06 1.29e-06 3.52e-06 5.44e-06 2.67e-06 1.85e-06 2.09e-06 2.15e-06 1.42e-06 8.81e-07 2.12e-05 2.43e-06 1.64e-07 8.03e-07 1.89e-06 1.78e-06 7.51e-07 5.82e-07
ENSG00000084112 \N 294373 3.61e-06 4.13e-06 2.97e-07 1.92e-06 4.56e-07 7.61e-07 1.92e-06 4.97e-07 2.08e-06 8.92e-07 3.01e-06 1.26e-06 4.14e-06 1.4e-06 8.59e-07 1.07e-06 1.58e-06 2.24e-06 6.47e-07 1.12e-06 9.06e-07 2.76e-06 2.13e-06 9.6e-07 3.4e-06 1.1e-06 1.18e-06 1.63e-06 1.85e-06 1.72e-06 2.02e-06 3.4e-07 4e-07 1.26e-06 1.07e-06 6.16e-07 7.27e-07 4.21e-07 6.01e-07 3.79e-07 2.82e-07 3.36e-06 5.97e-07 1.26e-08 3.75e-07 2.99e-07 2.8e-07 1.16e-07 1.98e-07
ENSG00000256262 USP30-AS1 98011 9.67e-06 1.26e-05 7.41e-07 5.03e-06 1.84e-06 4.01e-06 1.03e-05 1.81e-06 8.59e-06 4.22e-06 1.24e-05 4.89e-06 1.51e-05 3.85e-06 2.19e-06 5.33e-06 4.16e-06 5.77e-06 2.58e-06 2.4e-06 4.11e-06 8e-06 6.78e-06 1.92e-06 1.25e-05 2.43e-06 4.22e-06 3e-06 7.82e-06 7.71e-06 5.88e-06 4.81e-07 6.91e-07 2.77e-06 3.49e-06 1.61e-06 1.1e-06 1.53e-06 1.29e-06 1.01e-06 4.03e-07 1.28e-05 1.39e-06 1.89e-07 7.28e-07 1.01e-06 9.85e-07 6.91e-07 3.41e-07