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Genes within 1Mb (chr12:108564663:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000075856 SART3 3263 sc-eQTL 2.42e-01 -0.27 0.23 0.948 CD4_CTL L2
ENSG00000076248 UNG -532911 sc-eQTL 5.28e-01 -0.131 0.207 0.948 CD4_CTL L2
ENSG00000076555 ACACB -551932 sc-eQTL 3.30e-01 0.191 0.196 0.948 CD4_CTL L2
ENSG00000084112 SSH1 -292927 sc-eQTL 1.16e-01 0.331 0.21 0.948 CD4_CTL L2
ENSG00000110851 PRDM4 803391 sc-eQTL 1.50e-01 0.314 0.217 0.948 CD4_CTL L2
ENSG00000110876 SELPLG -69296 sc-eQTL 8.81e-01 0.0224 0.149 0.948 CD4_CTL L2
ENSG00000110906 KCTD10 -912696 sc-eQTL 7.46e-01 -0.0747 0.23 0.948 CD4_CTL L2
ENSG00000135093 USP30 -458426 sc-eQTL 9.86e-01 0.00376 0.211 0.948 CD4_CTL L2
ENSG00000136003 ISCU 2081 sc-eQTL 1.99e-01 -0.248 0.192 0.948 CD4_CTL L2
ENSG00000136045 PWP1 878864 sc-eQTL 4.23e-01 0.176 0.219 0.948 CD4_CTL L2
ENSG00000151148 UBE3B -912739 sc-eQTL 7.90e-01 -0.0611 0.229 0.948 CD4_CTL L2
ENSG00000189046 ALKBH2 -528968 sc-eQTL 4.98e-01 -0.149 0.219 0.948 CD4_CTL L2
ENSG00000198855 FICD 49386 sc-eQTL 4.50e-01 0.15 0.198 0.948 CD4_CTL L2
ENSG00000256139 AC007637.1 -546555 sc-eQTL 1.07e-01 0.269 0.166 0.948 CD4_CTL L2
ENSG00000256262 USP30-AS1 -489289 sc-eQTL 1.74e-01 -0.299 0.219 0.948 CD4_CTL L2
ENSG00000075856 SART3 3263 sc-eQTL 1.26e-01 0.354 0.23 0.949 CD8_TCM L2
ENSG00000076248 UNG -532911 sc-eQTL 3.33e-01 0.196 0.202 0.949 CD8_TCM L2
ENSG00000076555 ACACB -551932 sc-eQTL 7.14e-01 -0.0773 0.21 0.949 CD8_TCM L2
ENSG00000084112 SSH1 -292927 sc-eQTL 2.10e-01 0.274 0.218 0.949 CD8_TCM L2
ENSG00000110851 PRDM4 803391 sc-eQTL 4.17e-01 0.164 0.202 0.949 CD8_TCM L2
ENSG00000110876 SELPLG -69296 sc-eQTL 6.20e-01 -0.0651 0.131 0.949 CD8_TCM L2
ENSG00000110880 CORO1C -166933 sc-eQTL 7.49e-02 0.344 0.192 0.949 CD8_TCM L2
ENSG00000110906 KCTD10 -912696 sc-eQTL 4.97e-01 0.142 0.209 0.949 CD8_TCM L2
ENSG00000135093 USP30 -458426 sc-eQTL 5.32e-01 0.135 0.215 0.949 CD8_TCM L2
ENSG00000136003 ISCU 2081 sc-eQTL 1.23e-03 -0.662 0.202 0.949 CD8_TCM L2
ENSG00000136045 PWP1 878864 sc-eQTL 6.59e-01 -0.0966 0.218 0.949 CD8_TCM L2
ENSG00000151148 UBE3B -912739 sc-eQTL 4.37e-01 -0.177 0.227 0.949 CD8_TCM L2
ENSG00000174600 CMKLR1 225346 sc-eQTL 7.18e-01 0.0265 0.0731 0.949 CD8_TCM L2
ENSG00000189046 ALKBH2 -528968 sc-eQTL 3.73e-01 0.193 0.216 0.949 CD8_TCM L2
ENSG00000198855 FICD 49386 sc-eQTL 4.77e-01 -0.147 0.206 0.949 CD8_TCM L2
ENSG00000256262 USP30-AS1 -489289 sc-eQTL 3.83e-01 -0.178 0.203 0.949 CD8_TCM L2
ENSG00000075856 SART3 3263 sc-eQTL 6.07e-01 -0.135 0.261 0.944 PB L2
ENSG00000076248 UNG -532911 sc-eQTL 4.52e-01 -0.177 0.235 0.944 PB L2
ENSG00000076555 ACACB -551932 sc-eQTL 6.29e-01 0.106 0.218 0.944 PB L2
ENSG00000084112 SSH1 -292927 sc-eQTL 1.77e-01 0.328 0.241 0.944 PB L2
ENSG00000110851 PRDM4 803391 sc-eQTL 7.81e-01 -0.051 0.183 0.944 PB L2
ENSG00000110876 SELPLG -69296 sc-eQTL 2.26e-01 0.193 0.159 0.944 PB L2
ENSG00000110880 CORO1C -166933 sc-eQTL 1.96e-02 0.551 0.233 0.944 PB L2
ENSG00000110906 KCTD10 -912696 sc-eQTL 4.53e-01 0.192 0.254 0.944 PB L2
ENSG00000135093 USP30 -458426 sc-eQTL 9.90e-01 0.00283 0.237 0.944 PB L2
ENSG00000136003 ISCU 2081 sc-eQTL 3.27e-01 -0.177 0.179 0.944 PB L2
ENSG00000136045 PWP1 878864 sc-eQTL 4.04e-01 -0.182 0.218 0.944 PB L2
ENSG00000151148 UBE3B -912739 sc-eQTL 5.09e-01 0.16 0.242 0.944 PB L2
ENSG00000189046 ALKBH2 -528968 sc-eQTL 6.90e-01 0.0993 0.248 0.944 PB L2
ENSG00000198855 FICD 49386 sc-eQTL 9.93e-01 -0.00165 0.178 0.944 PB L2
ENSG00000256262 USP30-AS1 -489289 sc-eQTL 6.45e-01 -0.107 0.231 0.944 PB L2
ENSG00000257221 AC007569.1 -64005 sc-eQTL 6.17e-01 0.108 0.216 0.944 PB L2
ENSG00000075856 SART3 3263 sc-eQTL 4.19e-01 -0.168 0.208 0.95 Pro_T L2
ENSG00000076248 UNG -532911 sc-eQTL 1.41e-01 -0.228 0.154 0.95 Pro_T L2
ENSG00000076555 ACACB -551932 sc-eQTL 4.50e-01 0.142 0.188 0.95 Pro_T L2
ENSG00000084112 SSH1 -292927 sc-eQTL 8.12e-01 0.0458 0.193 0.95 Pro_T L2
ENSG00000110851 PRDM4 803391 sc-eQTL 9.20e-01 -0.0217 0.216 0.95 Pro_T L2
ENSG00000110876 SELPLG -69296 sc-eQTL 9.40e-01 -0.0107 0.143 0.95 Pro_T L2
ENSG00000110880 CORO1C -166933 sc-eQTL 8.04e-01 0.0362 0.146 0.95 Pro_T L2
ENSG00000110906 KCTD10 -912696 sc-eQTL 3.75e-01 0.18 0.203 0.95 Pro_T L2
ENSG00000135093 USP30 -458426 sc-eQTL 1.27e-01 -0.313 0.204 0.95 Pro_T L2
ENSG00000136003 ISCU 2081 sc-eQTL 2.91e-02 -0.334 0.152 0.95 Pro_T L2
ENSG00000136045 PWP1 878864 sc-eQTL 6.54e-01 0.0755 0.168 0.95 Pro_T L2
ENSG00000151148 UBE3B -912739 sc-eQTL 5.70e-02 0.406 0.212 0.95 Pro_T L2
ENSG00000174600 CMKLR1 225346 sc-eQTL 3.19e-01 -0.155 0.155 0.95 Pro_T L2
ENSG00000189046 ALKBH2 -528968 sc-eQTL 5.37e-01 -0.12 0.193 0.95 Pro_T L2
ENSG00000198855 FICD 49386 sc-eQTL 1.17e-01 0.291 0.184 0.95 Pro_T L2
ENSG00000256262 USP30-AS1 -489289 sc-eQTL 2.41e-01 0.221 0.188 0.95 Pro_T L2
ENSG00000257221 AC007569.1 -64005 sc-eQTL 8.22e-01 -0.0211 0.0939 0.95 Pro_T L2
ENSG00000075856 SART3 3263 sc-eQTL 8.86e-01 -0.0306 0.213 0.949 intMono L2
ENSG00000076555 ACACB -551932 sc-eQTL 5.41e-01 0.116 0.19 0.949 intMono L2
ENSG00000084112 SSH1 -292927 sc-eQTL 8.55e-01 0.0356 0.195 0.949 intMono L2
ENSG00000110851 PRDM4 803391 sc-eQTL 9.69e-01 0.008 0.209 0.949 intMono L2
ENSG00000110876 SELPLG -69296 sc-eQTL 3.52e-01 0.14 0.15 0.949 intMono L2
ENSG00000110880 CORO1C -166933 sc-eQTL 4.35e-01 -0.131 0.167 0.949 intMono L2
ENSG00000110906 KCTD10 -912696 sc-eQTL 5.11e-02 -0.41 0.209 0.949 intMono L2
ENSG00000135093 USP30 -458426 sc-eQTL 3.58e-01 0.183 0.199 0.949 intMono L2
ENSG00000136003 ISCU 2081 sc-eQTL 1.70e-01 -0.289 0.21 0.949 intMono L2
ENSG00000136045 PWP1 878864 sc-eQTL 2.24e-01 0.255 0.21 0.949 intMono L2
ENSG00000151148 UBE3B -912739 sc-eQTL 6.20e-01 0.0996 0.201 0.949 intMono L2
ENSG00000174600 CMKLR1 225346 sc-eQTL 8.92e-01 -0.0244 0.18 0.949 intMono L2
ENSG00000189046 ALKBH2 -528968 sc-eQTL 8.81e-01 -0.0312 0.209 0.949 intMono L2
ENSG00000198855 FICD 49386 sc-eQTL 5.52e-01 -0.119 0.2 0.949 intMono L2
ENSG00000256262 USP30-AS1 -489289 sc-eQTL 6.88e-01 0.0722 0.18 0.949 intMono L2
ENSG00000075856 SART3 3263 sc-eQTL 5.04e-01 0.135 0.203 0.948 ncMono L2
ENSG00000076555 ACACB -551932 sc-eQTL 4.89e-01 -0.133 0.192 0.948 ncMono L2
ENSG00000084112 SSH1 -292927 sc-eQTL 7.15e-01 0.0671 0.183 0.948 ncMono L2
ENSG00000110851 PRDM4 803391 sc-eQTL 5.03e-01 -0.121 0.181 0.948 ncMono L2
ENSG00000110876 SELPLG -69296 sc-eQTL 7.09e-01 -0.0414 0.111 0.948 ncMono L2
ENSG00000110880 CORO1C -166933 sc-eQTL 7.31e-01 -0.0702 0.204 0.948 ncMono L2
ENSG00000110906 KCTD10 -912696 sc-eQTL 3.31e-01 0.207 0.212 0.948 ncMono L2
ENSG00000135093 USP30 -458426 sc-eQTL 2.04e-01 -0.278 0.218 0.948 ncMono L2
ENSG00000136003 ISCU 2081 sc-eQTL 9.56e-02 -0.316 0.189 0.948 ncMono L2
ENSG00000136045 PWP1 878864 sc-eQTL 6.39e-01 0.0913 0.194 0.948 ncMono L2
ENSG00000151148 UBE3B -912739 sc-eQTL 6.66e-01 0.0928 0.215 0.948 ncMono L2
ENSG00000174600 CMKLR1 225346 sc-eQTL 8.86e-01 0.0264 0.184 0.948 ncMono L2
ENSG00000189046 ALKBH2 -528968 sc-eQTL 2.27e-01 -0.26 0.214 0.948 ncMono L2
ENSG00000198855 FICD 49386 sc-eQTL 9.07e-01 0.023 0.197 0.948 ncMono L2
ENSG00000256262 USP30-AS1 -489289 sc-eQTL 5.45e-01 -0.12 0.198 0.948 ncMono L2
ENSG00000075856 SART3 3263 sc-eQTL 7.85e-01 -0.0595 0.218 0.946 pDC L2
ENSG00000076248 UNG -532911 sc-eQTL 2.29e-01 0.244 0.203 0.946 pDC L2
ENSG00000076555 ACACB -551932 sc-eQTL 8.11e-02 0.364 0.207 0.946 pDC L2
ENSG00000084112 SSH1 -292927 sc-eQTL 4.43e-01 0.169 0.22 0.946 pDC L2
ENSG00000110851 PRDM4 803391 sc-eQTL 8.63e-01 0.0424 0.244 0.946 pDC L2
ENSG00000110876 SELPLG -69296 sc-eQTL 4.41e-01 -0.112 0.145 0.946 pDC L2
ENSG00000110880 CORO1C -166933 sc-eQTL 5.63e-01 0.0927 0.16 0.946 pDC L2
ENSG00000110906 KCTD10 -912696 sc-eQTL 6.30e-01 -0.119 0.246 0.946 pDC L2
ENSG00000135093 USP30 -458426 sc-eQTL 5.48e-03 0.592 0.21 0.946 pDC L2
ENSG00000136003 ISCU 2081 sc-eQTL 2.29e-01 -0.219 0.182 0.946 pDC L2
ENSG00000136045 PWP1 878864 sc-eQTL 1.66e-01 0.298 0.214 0.946 pDC L2
ENSG00000151148 UBE3B -912739 sc-eQTL 3.36e-01 -0.224 0.232 0.946 pDC L2
ENSG00000174600 CMKLR1 225346 sc-eQTL 9.37e-02 0.25 0.148 0.946 pDC L2
ENSG00000189046 ALKBH2 -528968 sc-eQTL 5.45e-02 -0.401 0.207 0.946 pDC L2
ENSG00000198855 FICD 49386 sc-eQTL 3.46e-01 0.198 0.209 0.946 pDC L2
ENSG00000256262 USP30-AS1 -489289 sc-eQTL 3.14e-01 0.195 0.193 0.946 pDC L2
ENSG00000257221 AC007569.1 -64005 sc-eQTL 2.11e-01 0.255 0.203 0.946 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000075856 SART3 3263 eQTL 1.1399999999999999e-24 -0.382 0.0362 0.00204 0.00532 0.0648
ENSG00000136003 ISCU 2062 eQTL 1.53e-96 -0.938 0.0399 0.0 0.0 0.0648
ENSG00000136045 PWP1 878864 eQTL 0.0426 0.0727 0.0358 0.0 0.0 0.0648
ENSG00000183160 TMEM119 -33657 eQTL 1.48e-05 0.141 0.0323 0.0 0.0 0.0648
ENSG00000256139 AC007637.1 -546555 eQTL 0.0302 -0.163 0.0749 0.0 0.0 0.0648

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000075856 SART3 3263 3.75e-05 3.34e-05 6.4e-06 1.58e-05 6.02e-06 1.46e-05 4.66e-05 4.69e-06 3.23e-05 1.6e-05 3.92e-05 1.82e-05 4.89e-05 1.45e-05 7.14e-06 2e-05 1.84e-05 2.61e-05 7.94e-06 6.89e-06 1.6e-05 3.46e-05 3.3e-05 9.31e-06 4.56e-05 8.28e-06 1.47e-05 1.33e-05 3.31e-05 2.59e-05 2.08e-05 1.64e-06 2.61e-06 7.1e-06 1.19e-05 5.85e-06 3.11e-06 3.11e-06 4.8e-06 3.36e-06 1.76e-06 3.89e-05 3.74e-06 3.62e-07 2.59e-06 3.94e-06 4.11e-06 1.6e-06 1.54e-06
ENSG00000110851 \N 803391 2.66e-07 1.11e-07 3.44e-08 1.68e-07 1.03e-07 9.13e-08 1.36e-07 5.29e-08 1.32e-07 3.99e-08 1.59e-07 7.49e-08 1.2e-07 6.1e-08 4.89e-08 7.76e-08 5.15e-08 1.06e-07 5.22e-08 3.15e-08 1.03e-07 1.31e-07 1.31e-07 5.01e-08 1.33e-07 1.03e-07 1.11e-07 8.49e-08 1.05e-07 1.09e-07 9.5e-08 3.59e-08 2.74e-08 8.02e-08 9.51e-08 4.26e-08 5.26e-08 9.06e-08 8.22e-08 3.74e-08 3.07e-08 1.4e-07 4.01e-08 1.71e-08 1.12e-07 1.75e-08 1.37e-07 4.82e-09 4.61e-08
ENSG00000136003 ISCU 2062 3.75e-05 3.34e-05 6.39e-06 1.58e-05 6.02e-06 1.46e-05 4.66e-05 4.69e-06 3.23e-05 1.6e-05 3.92e-05 1.82e-05 4.89e-05 1.45e-05 7.14e-06 2e-05 1.84e-05 2.61e-05 7.92e-06 6.89e-06 1.6e-05 3.46e-05 3.3e-05 9.31e-06 4.56e-05 8.28e-06 1.47e-05 1.33e-05 3.31e-05 2.59e-05 2.08e-05 1.64e-06 2.61e-06 7.1e-06 1.19e-05 5.85e-06 3.11e-06 3.11e-06 4.8e-06 3.36e-06 1.76e-06 3.89e-05 3.74e-06 3.62e-07 2.59e-06 3.94e-06 4.11e-06 1.6e-06 1.5e-06
ENSG00000183160 TMEM119 -33657 2.73e-05 2.74e-05 4.95e-06 1.41e-05 4.31e-06 1.15e-05 3.58e-05 3.76e-06 2.29e-05 1.19e-05 2.88e-05 1.37e-05 3.72e-05 1.15e-05 6.39e-06 1.42e-05 1.32e-05 2.01e-05 6.56e-06 5.66e-06 1.11e-05 2.52e-05 2.57e-05 7.36e-06 3.39e-05 6.14e-06 1.08e-05 9.67e-06 2.67e-05 2.03e-05 1.53e-05 1.62e-06 2.29e-06 6.01e-06 9.3e-06 4.55e-06 2.4e-06 2.99e-06 3.99e-06 2.82e-06 1.66e-06 2.95e-05 2.95e-06 2.07e-07 2.01e-06 3.29e-06 3.79e-06 1.51e-06 1.27e-06