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Genes within 1Mb (chr12:108562834:C:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000075856 SART3 1434 sc-eQTL 2.42e-01 -0.27 0.23 0.948 CD4_CTL L2
ENSG00000076248 UNG -534740 sc-eQTL 5.28e-01 -0.131 0.207 0.948 CD4_CTL L2
ENSG00000076555 ACACB -553761 sc-eQTL 3.30e-01 0.191 0.196 0.948 CD4_CTL L2
ENSG00000084112 SSH1 -294756 sc-eQTL 1.16e-01 0.331 0.21 0.948 CD4_CTL L2
ENSG00000110851 PRDM4 801562 sc-eQTL 1.50e-01 0.314 0.217 0.948 CD4_CTL L2
ENSG00000110876 SELPLG -71125 sc-eQTL 8.81e-01 0.0224 0.149 0.948 CD4_CTL L2
ENSG00000110906 KCTD10 -914525 sc-eQTL 7.46e-01 -0.0747 0.23 0.948 CD4_CTL L2
ENSG00000135093 USP30 -460255 sc-eQTL 9.86e-01 0.00376 0.211 0.948 CD4_CTL L2
ENSG00000136003 ISCU 252 sc-eQTL 1.99e-01 -0.248 0.192 0.948 CD4_CTL L2
ENSG00000136045 PWP1 877035 sc-eQTL 4.23e-01 0.176 0.219 0.948 CD4_CTL L2
ENSG00000151148 UBE3B -914568 sc-eQTL 7.90e-01 -0.0611 0.229 0.948 CD4_CTL L2
ENSG00000189046 ALKBH2 -530797 sc-eQTL 4.98e-01 -0.149 0.219 0.948 CD4_CTL L2
ENSG00000198855 FICD 47557 sc-eQTL 4.50e-01 0.15 0.198 0.948 CD4_CTL L2
ENSG00000256139 AC007637.1 -548384 sc-eQTL 1.07e-01 0.269 0.166 0.948 CD4_CTL L2
ENSG00000256262 USP30-AS1 -491118 sc-eQTL 1.74e-01 -0.299 0.219 0.948 CD4_CTL L2
ENSG00000075856 SART3 1434 sc-eQTL 1.26e-01 0.354 0.23 0.949 CD8_TCM L2
ENSG00000076248 UNG -534740 sc-eQTL 3.33e-01 0.196 0.202 0.949 CD8_TCM L2
ENSG00000076555 ACACB -553761 sc-eQTL 7.14e-01 -0.0773 0.21 0.949 CD8_TCM L2
ENSG00000084112 SSH1 -294756 sc-eQTL 2.10e-01 0.274 0.218 0.949 CD8_TCM L2
ENSG00000110851 PRDM4 801562 sc-eQTL 4.17e-01 0.164 0.202 0.949 CD8_TCM L2
ENSG00000110876 SELPLG -71125 sc-eQTL 6.20e-01 -0.0651 0.131 0.949 CD8_TCM L2
ENSG00000110880 CORO1C -168762 sc-eQTL 7.49e-02 0.344 0.192 0.949 CD8_TCM L2
ENSG00000110906 KCTD10 -914525 sc-eQTL 4.97e-01 0.142 0.209 0.949 CD8_TCM L2
ENSG00000135093 USP30 -460255 sc-eQTL 5.32e-01 0.135 0.215 0.949 CD8_TCM L2
ENSG00000136003 ISCU 252 sc-eQTL 1.23e-03 -0.662 0.202 0.949 CD8_TCM L2
ENSG00000136045 PWP1 877035 sc-eQTL 6.59e-01 -0.0966 0.218 0.949 CD8_TCM L2
ENSG00000151148 UBE3B -914568 sc-eQTL 4.37e-01 -0.177 0.227 0.949 CD8_TCM L2
ENSG00000174600 CMKLR1 223517 sc-eQTL 7.18e-01 0.0265 0.0731 0.949 CD8_TCM L2
ENSG00000189046 ALKBH2 -530797 sc-eQTL 3.73e-01 0.193 0.216 0.949 CD8_TCM L2
ENSG00000198855 FICD 47557 sc-eQTL 4.77e-01 -0.147 0.206 0.949 CD8_TCM L2
ENSG00000256262 USP30-AS1 -491118 sc-eQTL 3.83e-01 -0.178 0.203 0.949 CD8_TCM L2
ENSG00000075856 SART3 1434 sc-eQTL 6.07e-01 -0.135 0.261 0.944 PB L2
ENSG00000076248 UNG -534740 sc-eQTL 4.52e-01 -0.177 0.235 0.944 PB L2
ENSG00000076555 ACACB -553761 sc-eQTL 6.29e-01 0.106 0.218 0.944 PB L2
ENSG00000084112 SSH1 -294756 sc-eQTL 1.77e-01 0.328 0.241 0.944 PB L2
ENSG00000110851 PRDM4 801562 sc-eQTL 7.81e-01 -0.051 0.183 0.944 PB L2
ENSG00000110876 SELPLG -71125 sc-eQTL 2.26e-01 0.193 0.159 0.944 PB L2
ENSG00000110880 CORO1C -168762 sc-eQTL 1.96e-02 0.551 0.233 0.944 PB L2
ENSG00000110906 KCTD10 -914525 sc-eQTL 4.53e-01 0.192 0.254 0.944 PB L2
ENSG00000135093 USP30 -460255 sc-eQTL 9.90e-01 0.00283 0.237 0.944 PB L2
ENSG00000136003 ISCU 252 sc-eQTL 3.27e-01 -0.177 0.179 0.944 PB L2
ENSG00000136045 PWP1 877035 sc-eQTL 4.04e-01 -0.182 0.218 0.944 PB L2
ENSG00000151148 UBE3B -914568 sc-eQTL 5.09e-01 0.16 0.242 0.944 PB L2
ENSG00000189046 ALKBH2 -530797 sc-eQTL 6.90e-01 0.0993 0.248 0.944 PB L2
ENSG00000198855 FICD 47557 sc-eQTL 9.93e-01 -0.00165 0.178 0.944 PB L2
ENSG00000256262 USP30-AS1 -491118 sc-eQTL 6.45e-01 -0.107 0.231 0.944 PB L2
ENSG00000257221 AC007569.1 -65834 sc-eQTL 6.17e-01 0.108 0.216 0.944 PB L2
ENSG00000075856 SART3 1434 sc-eQTL 4.19e-01 -0.168 0.208 0.95 Pro_T L2
ENSG00000076248 UNG -534740 sc-eQTL 1.41e-01 -0.228 0.154 0.95 Pro_T L2
ENSG00000076555 ACACB -553761 sc-eQTL 4.50e-01 0.142 0.188 0.95 Pro_T L2
ENSG00000084112 SSH1 -294756 sc-eQTL 8.12e-01 0.0458 0.193 0.95 Pro_T L2
ENSG00000110851 PRDM4 801562 sc-eQTL 9.20e-01 -0.0217 0.216 0.95 Pro_T L2
ENSG00000110876 SELPLG -71125 sc-eQTL 9.40e-01 -0.0107 0.143 0.95 Pro_T L2
ENSG00000110880 CORO1C -168762 sc-eQTL 8.04e-01 0.0362 0.146 0.95 Pro_T L2
ENSG00000110906 KCTD10 -914525 sc-eQTL 3.75e-01 0.18 0.203 0.95 Pro_T L2
ENSG00000135093 USP30 -460255 sc-eQTL 1.27e-01 -0.313 0.204 0.95 Pro_T L2
ENSG00000136003 ISCU 252 sc-eQTL 2.91e-02 -0.334 0.152 0.95 Pro_T L2
ENSG00000136045 PWP1 877035 sc-eQTL 6.54e-01 0.0755 0.168 0.95 Pro_T L2
ENSG00000151148 UBE3B -914568 sc-eQTL 5.70e-02 0.406 0.212 0.95 Pro_T L2
ENSG00000174600 CMKLR1 223517 sc-eQTL 3.19e-01 -0.155 0.155 0.95 Pro_T L2
ENSG00000189046 ALKBH2 -530797 sc-eQTL 5.37e-01 -0.12 0.193 0.95 Pro_T L2
ENSG00000198855 FICD 47557 sc-eQTL 1.17e-01 0.291 0.184 0.95 Pro_T L2
ENSG00000256262 USP30-AS1 -491118 sc-eQTL 2.41e-01 0.221 0.188 0.95 Pro_T L2
ENSG00000257221 AC007569.1 -65834 sc-eQTL 8.22e-01 -0.0211 0.0939 0.95 Pro_T L2
ENSG00000075856 SART3 1434 sc-eQTL 8.86e-01 -0.0306 0.213 0.949 intMono L2
ENSG00000076555 ACACB -553761 sc-eQTL 5.41e-01 0.116 0.19 0.949 intMono L2
ENSG00000084112 SSH1 -294756 sc-eQTL 8.55e-01 0.0356 0.195 0.949 intMono L2
ENSG00000110851 PRDM4 801562 sc-eQTL 9.69e-01 0.008 0.209 0.949 intMono L2
ENSG00000110876 SELPLG -71125 sc-eQTL 3.52e-01 0.14 0.15 0.949 intMono L2
ENSG00000110880 CORO1C -168762 sc-eQTL 4.35e-01 -0.131 0.167 0.949 intMono L2
ENSG00000110906 KCTD10 -914525 sc-eQTL 5.11e-02 -0.41 0.209 0.949 intMono L2
ENSG00000135093 USP30 -460255 sc-eQTL 3.58e-01 0.183 0.199 0.949 intMono L2
ENSG00000136003 ISCU 252 sc-eQTL 1.70e-01 -0.289 0.21 0.949 intMono L2
ENSG00000136045 PWP1 877035 sc-eQTL 2.24e-01 0.255 0.21 0.949 intMono L2
ENSG00000151148 UBE3B -914568 sc-eQTL 6.20e-01 0.0996 0.201 0.949 intMono L2
ENSG00000174600 CMKLR1 223517 sc-eQTL 8.92e-01 -0.0244 0.18 0.949 intMono L2
ENSG00000189046 ALKBH2 -530797 sc-eQTL 8.81e-01 -0.0312 0.209 0.949 intMono L2
ENSG00000198855 FICD 47557 sc-eQTL 5.52e-01 -0.119 0.2 0.949 intMono L2
ENSG00000256262 USP30-AS1 -491118 sc-eQTL 6.88e-01 0.0722 0.18 0.949 intMono L2
ENSG00000075856 SART3 1434 sc-eQTL 5.04e-01 0.135 0.203 0.948 ncMono L2
ENSG00000076555 ACACB -553761 sc-eQTL 4.89e-01 -0.133 0.192 0.948 ncMono L2
ENSG00000084112 SSH1 -294756 sc-eQTL 7.15e-01 0.0671 0.183 0.948 ncMono L2
ENSG00000110851 PRDM4 801562 sc-eQTL 5.03e-01 -0.121 0.181 0.948 ncMono L2
ENSG00000110876 SELPLG -71125 sc-eQTL 7.09e-01 -0.0414 0.111 0.948 ncMono L2
ENSG00000110880 CORO1C -168762 sc-eQTL 7.31e-01 -0.0702 0.204 0.948 ncMono L2
ENSG00000110906 KCTD10 -914525 sc-eQTL 3.31e-01 0.207 0.212 0.948 ncMono L2
ENSG00000135093 USP30 -460255 sc-eQTL 2.04e-01 -0.278 0.218 0.948 ncMono L2
ENSG00000136003 ISCU 252 sc-eQTL 9.56e-02 -0.316 0.189 0.948 ncMono L2
ENSG00000136045 PWP1 877035 sc-eQTL 6.39e-01 0.0913 0.194 0.948 ncMono L2
ENSG00000151148 UBE3B -914568 sc-eQTL 6.66e-01 0.0928 0.215 0.948 ncMono L2
ENSG00000174600 CMKLR1 223517 sc-eQTL 8.86e-01 0.0264 0.184 0.948 ncMono L2
ENSG00000189046 ALKBH2 -530797 sc-eQTL 2.27e-01 -0.26 0.214 0.948 ncMono L2
ENSG00000198855 FICD 47557 sc-eQTL 9.07e-01 0.023 0.197 0.948 ncMono L2
ENSG00000256262 USP30-AS1 -491118 sc-eQTL 5.45e-01 -0.12 0.198 0.948 ncMono L2
ENSG00000075856 SART3 1434 sc-eQTL 7.85e-01 -0.0595 0.218 0.946 pDC L2
ENSG00000076248 UNG -534740 sc-eQTL 2.29e-01 0.244 0.203 0.946 pDC L2
ENSG00000076555 ACACB -553761 sc-eQTL 8.11e-02 0.364 0.207 0.946 pDC L2
ENSG00000084112 SSH1 -294756 sc-eQTL 4.43e-01 0.169 0.22 0.946 pDC L2
ENSG00000110851 PRDM4 801562 sc-eQTL 8.63e-01 0.0424 0.244 0.946 pDC L2
ENSG00000110876 SELPLG -71125 sc-eQTL 4.41e-01 -0.112 0.145 0.946 pDC L2
ENSG00000110880 CORO1C -168762 sc-eQTL 5.63e-01 0.0927 0.16 0.946 pDC L2
ENSG00000110906 KCTD10 -914525 sc-eQTL 6.30e-01 -0.119 0.246 0.946 pDC L2
ENSG00000135093 USP30 -460255 sc-eQTL 5.48e-03 0.592 0.21 0.946 pDC L2
ENSG00000136003 ISCU 252 sc-eQTL 2.29e-01 -0.219 0.182 0.946 pDC L2
ENSG00000136045 PWP1 877035 sc-eQTL 1.66e-01 0.298 0.214 0.946 pDC L2
ENSG00000151148 UBE3B -914568 sc-eQTL 3.36e-01 -0.224 0.232 0.946 pDC L2
ENSG00000174600 CMKLR1 223517 sc-eQTL 9.37e-02 0.25 0.148 0.946 pDC L2
ENSG00000189046 ALKBH2 -530797 sc-eQTL 5.45e-02 -0.401 0.207 0.946 pDC L2
ENSG00000198855 FICD 47557 sc-eQTL 3.46e-01 0.198 0.209 0.946 pDC L2
ENSG00000256262 USP30-AS1 -491118 sc-eQTL 3.14e-01 0.195 0.193 0.946 pDC L2
ENSG00000257221 AC007569.1 -65834 sc-eQTL 2.11e-01 0.255 0.203 0.946 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000075856 SART3 1434 eQTL 1.1399999999999999e-24 -0.382 0.0362 0.00204 0.00532 0.0648
ENSG00000136003 ISCU 233 eQTL 1.53e-96 -0.938 0.0399 0.0 0.0 0.0648
ENSG00000136045 PWP1 877035 eQTL 0.0426 0.0727 0.0358 0.0 0.0 0.0648
ENSG00000183160 TMEM119 -35486 eQTL 1.48e-05 0.141 0.0323 0.0 0.0 0.0648
ENSG00000256139 AC007637.1 -548384 eQTL 0.0302 -0.163 0.0749 0.0 0.0 0.0648

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000075856 SART3 1434 0.000209 0.000211 3.1e-05 6.84e-05 2.94e-05 7.11e-05 0.000198 2.12e-05 0.000145 7.52e-05 0.000181 8.18e-05 0.000232 6.61e-05 3.1e-05 0.00013 7.84e-05 0.00012 4.28e-05 2.48e-05 8.02e-05 0.000193 0.000171 4.63e-05 0.00021 4.77e-05 8.85e-05 5.12e-05 0.000169 7.91e-05 9.31e-05 5.33e-06 8.82e-06 2.64e-05 3.17e-05 2e-05 9.35e-06 9.45e-06 1.55e-05 8.7e-06 3.87e-06 0.000225 2.07e-05 5.58e-07 1.06e-05 1.5e-05 2.02e-05 5.03e-06 5.08e-06
ENSG00000110851 \N 801562 2.8e-07 1.3e-07 3.65e-08 2.35e-07 9.65e-08 8.45e-08 1.67e-07 5.33e-08 1.45e-07 4.4e-08 1.57e-07 7.75e-08 1.41e-07 7.37e-08 6.02e-08 7.53e-08 4.94e-08 1.14e-07 5.36e-08 4.03e-08 1.04e-07 1.26e-07 1.39e-07 4.26e-08 1.33e-07 1.13e-07 1.07e-07 8.71e-08 1.05e-07 1.1e-07 9.73e-08 3.88e-08 2.74e-08 9.52e-08 3.12e-08 3.93e-08 5.03e-08 9.2e-08 7.47e-08 3.71e-08 3.35e-08 1.36e-07 4.52e-08 3.36e-08 8.16e-08 1.55e-08 1.25e-07 4.82e-09 4.72e-08
ENSG00000136003 ISCU 233 0.000342 0.000399 5.3e-05 0.000121 8.03e-05 0.000123 0.000375 6.31e-05 0.000308 0.000166 0.000391 0.000172 0.000454 0.000152 7.79e-05 0.000238 0.000156 0.000255 9.98e-05 6.75e-05 0.000185 0.000371 0.0003 9.83e-05 0.000395 0.000125 0.000179 0.000132 0.000314 0.000177 0.000198 2.3e-05 3.18e-05 6.62e-05 7.89e-05 5.48e-05 3.32e-05 3.08e-05 4.81e-05 2.49e-05 1.91e-05 0.000439 4.93e-05 4.04e-06 4.02e-05 4.51e-05 4.82e-05 1.87e-05 1.87e-05
ENSG00000183160 TMEM119 -35486 3.17e-05 2.54e-05 5.55e-06 1.41e-05 2.45e-06 1.34e-05 3.03e-05 2.37e-06 1.7e-05 6.72e-06 1.6e-05 7.68e-06 2.26e-05 8.97e-06 5.26e-06 1.22e-05 8.25e-06 9.79e-06 3.63e-06 4.69e-06 7.34e-06 1.42e-05 2.11e-05 7.06e-06 2.66e-05 4.42e-06 8.84e-06 7.73e-06 2.34e-05 1.27e-05 9.85e-06 1.44e-06 2.23e-06 5.37e-06 8.27e-06 4.37e-06 1.71e-06 2.38e-06 3.24e-06 2.27e-06 1.96e-06 3.22e-05 2.79e-06 1.82e-07 9.29e-07 2.8e-06 2.56e-06 7.99e-07 6.24e-07