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Genes within 1Mb (chr12:108535674:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000075856 SART3 -25726 sc-eQTL 2.42e-01 -0.27 0.23 0.948 CD4_CTL L2
ENSG00000076248 UNG -561900 sc-eQTL 5.28e-01 -0.131 0.207 0.948 CD4_CTL L2
ENSG00000076555 ACACB -580921 sc-eQTL 3.30e-01 0.191 0.196 0.948 CD4_CTL L2
ENSG00000084112 SSH1 -321916 sc-eQTL 1.16e-01 0.331 0.21 0.948 CD4_CTL L2
ENSG00000110851 PRDM4 774402 sc-eQTL 1.50e-01 0.314 0.217 0.948 CD4_CTL L2
ENSG00000110876 SELPLG -98285 sc-eQTL 8.81e-01 0.0224 0.149 0.948 CD4_CTL L2
ENSG00000110906 KCTD10 -941685 sc-eQTL 7.46e-01 -0.0747 0.23 0.948 CD4_CTL L2
ENSG00000135093 USP30 -487415 sc-eQTL 9.86e-01 0.00376 0.211 0.948 CD4_CTL L2
ENSG00000136003 ISCU -26908 sc-eQTL 1.99e-01 -0.248 0.192 0.948 CD4_CTL L2
ENSG00000136045 PWP1 849875 sc-eQTL 4.23e-01 0.176 0.219 0.948 CD4_CTL L2
ENSG00000151148 UBE3B -941728 sc-eQTL 7.90e-01 -0.0611 0.229 0.948 CD4_CTL L2
ENSG00000189046 ALKBH2 -557957 sc-eQTL 4.98e-01 -0.149 0.219 0.948 CD4_CTL L2
ENSG00000198855 FICD 20397 sc-eQTL 4.50e-01 0.15 0.198 0.948 CD4_CTL L2
ENSG00000256139 AC007637.1 -575544 sc-eQTL 1.07e-01 0.269 0.166 0.948 CD4_CTL L2
ENSG00000256262 USP30-AS1 -518278 sc-eQTL 1.74e-01 -0.299 0.219 0.948 CD4_CTL L2
ENSG00000075856 SART3 -25726 sc-eQTL 1.26e-01 0.354 0.23 0.949 CD8_TCM L2
ENSG00000076248 UNG -561900 sc-eQTL 3.33e-01 0.196 0.202 0.949 CD8_TCM L2
ENSG00000076555 ACACB -580921 sc-eQTL 7.14e-01 -0.0773 0.21 0.949 CD8_TCM L2
ENSG00000084112 SSH1 -321916 sc-eQTL 2.10e-01 0.274 0.218 0.949 CD8_TCM L2
ENSG00000110851 PRDM4 774402 sc-eQTL 4.17e-01 0.164 0.202 0.949 CD8_TCM L2
ENSG00000110876 SELPLG -98285 sc-eQTL 6.20e-01 -0.0651 0.131 0.949 CD8_TCM L2
ENSG00000110880 CORO1C -195922 sc-eQTL 7.49e-02 0.344 0.192 0.949 CD8_TCM L2
ENSG00000110906 KCTD10 -941685 sc-eQTL 4.97e-01 0.142 0.209 0.949 CD8_TCM L2
ENSG00000135093 USP30 -487415 sc-eQTL 5.32e-01 0.135 0.215 0.949 CD8_TCM L2
ENSG00000136003 ISCU -26908 sc-eQTL 1.23e-03 -0.662 0.202 0.949 CD8_TCM L2
ENSG00000136045 PWP1 849875 sc-eQTL 6.59e-01 -0.0966 0.218 0.949 CD8_TCM L2
ENSG00000151148 UBE3B -941728 sc-eQTL 4.37e-01 -0.177 0.227 0.949 CD8_TCM L2
ENSG00000174600 CMKLR1 196357 sc-eQTL 7.18e-01 0.0265 0.0731 0.949 CD8_TCM L2
ENSG00000189046 ALKBH2 -557957 sc-eQTL 3.73e-01 0.193 0.216 0.949 CD8_TCM L2
ENSG00000198855 FICD 20397 sc-eQTL 4.77e-01 -0.147 0.206 0.949 CD8_TCM L2
ENSG00000256262 USP30-AS1 -518278 sc-eQTL 3.83e-01 -0.178 0.203 0.949 CD8_TCM L2
ENSG00000075856 SART3 -25726 sc-eQTL 6.07e-01 -0.135 0.261 0.944 PB L2
ENSG00000076248 UNG -561900 sc-eQTL 4.52e-01 -0.177 0.235 0.944 PB L2
ENSG00000076555 ACACB -580921 sc-eQTL 6.29e-01 0.106 0.218 0.944 PB L2
ENSG00000084112 SSH1 -321916 sc-eQTL 1.77e-01 0.328 0.241 0.944 PB L2
ENSG00000110851 PRDM4 774402 sc-eQTL 7.81e-01 -0.051 0.183 0.944 PB L2
ENSG00000110876 SELPLG -98285 sc-eQTL 2.26e-01 0.193 0.159 0.944 PB L2
ENSG00000110880 CORO1C -195922 sc-eQTL 1.96e-02 0.551 0.233 0.944 PB L2
ENSG00000110906 KCTD10 -941685 sc-eQTL 4.53e-01 0.192 0.254 0.944 PB L2
ENSG00000135093 USP30 -487415 sc-eQTL 9.90e-01 0.00283 0.237 0.944 PB L2
ENSG00000136003 ISCU -26908 sc-eQTL 3.27e-01 -0.177 0.179 0.944 PB L2
ENSG00000136045 PWP1 849875 sc-eQTL 4.04e-01 -0.182 0.218 0.944 PB L2
ENSG00000151148 UBE3B -941728 sc-eQTL 5.09e-01 0.16 0.242 0.944 PB L2
ENSG00000189046 ALKBH2 -557957 sc-eQTL 6.90e-01 0.0993 0.248 0.944 PB L2
ENSG00000198855 FICD 20397 sc-eQTL 9.93e-01 -0.00165 0.178 0.944 PB L2
ENSG00000256262 USP30-AS1 -518278 sc-eQTL 6.45e-01 -0.107 0.231 0.944 PB L2
ENSG00000257221 AC007569.1 -92994 sc-eQTL 6.17e-01 0.108 0.216 0.944 PB L2
ENSG00000075856 SART3 -25726 sc-eQTL 4.19e-01 -0.168 0.208 0.95 Pro_T L2
ENSG00000076248 UNG -561900 sc-eQTL 1.41e-01 -0.228 0.154 0.95 Pro_T L2
ENSG00000076555 ACACB -580921 sc-eQTL 4.50e-01 0.142 0.188 0.95 Pro_T L2
ENSG00000084112 SSH1 -321916 sc-eQTL 8.12e-01 0.0458 0.193 0.95 Pro_T L2
ENSG00000110851 PRDM4 774402 sc-eQTL 9.20e-01 -0.0217 0.216 0.95 Pro_T L2
ENSG00000110876 SELPLG -98285 sc-eQTL 9.40e-01 -0.0107 0.143 0.95 Pro_T L2
ENSG00000110880 CORO1C -195922 sc-eQTL 8.04e-01 0.0362 0.146 0.95 Pro_T L2
ENSG00000110906 KCTD10 -941685 sc-eQTL 3.75e-01 0.18 0.203 0.95 Pro_T L2
ENSG00000135093 USP30 -487415 sc-eQTL 1.27e-01 -0.313 0.204 0.95 Pro_T L2
ENSG00000136003 ISCU -26908 sc-eQTL 2.91e-02 -0.334 0.152 0.95 Pro_T L2
ENSG00000136045 PWP1 849875 sc-eQTL 6.54e-01 0.0755 0.168 0.95 Pro_T L2
ENSG00000151148 UBE3B -941728 sc-eQTL 5.70e-02 0.406 0.212 0.95 Pro_T L2
ENSG00000174600 CMKLR1 196357 sc-eQTL 3.19e-01 -0.155 0.155 0.95 Pro_T L2
ENSG00000189046 ALKBH2 -557957 sc-eQTL 5.37e-01 -0.12 0.193 0.95 Pro_T L2
ENSG00000198855 FICD 20397 sc-eQTL 1.17e-01 0.291 0.184 0.95 Pro_T L2
ENSG00000256262 USP30-AS1 -518278 sc-eQTL 2.41e-01 0.221 0.188 0.95 Pro_T L2
ENSG00000257221 AC007569.1 -92994 sc-eQTL 8.22e-01 -0.0211 0.0939 0.95 Pro_T L2
ENSG00000075856 SART3 -25726 sc-eQTL 8.86e-01 -0.0306 0.213 0.949 intMono L2
ENSG00000076555 ACACB -580921 sc-eQTL 5.41e-01 0.116 0.19 0.949 intMono L2
ENSG00000084112 SSH1 -321916 sc-eQTL 8.55e-01 0.0356 0.195 0.949 intMono L2
ENSG00000110851 PRDM4 774402 sc-eQTL 9.69e-01 0.008 0.209 0.949 intMono L2
ENSG00000110876 SELPLG -98285 sc-eQTL 3.52e-01 0.14 0.15 0.949 intMono L2
ENSG00000110880 CORO1C -195922 sc-eQTL 4.35e-01 -0.131 0.167 0.949 intMono L2
ENSG00000110906 KCTD10 -941685 sc-eQTL 5.11e-02 -0.41 0.209 0.949 intMono L2
ENSG00000135093 USP30 -487415 sc-eQTL 3.58e-01 0.183 0.199 0.949 intMono L2
ENSG00000136003 ISCU -26908 sc-eQTL 1.70e-01 -0.289 0.21 0.949 intMono L2
ENSG00000136045 PWP1 849875 sc-eQTL 2.24e-01 0.255 0.21 0.949 intMono L2
ENSG00000151148 UBE3B -941728 sc-eQTL 6.20e-01 0.0996 0.201 0.949 intMono L2
ENSG00000174600 CMKLR1 196357 sc-eQTL 8.92e-01 -0.0244 0.18 0.949 intMono L2
ENSG00000189046 ALKBH2 -557957 sc-eQTL 8.81e-01 -0.0312 0.209 0.949 intMono L2
ENSG00000198855 FICD 20397 sc-eQTL 5.52e-01 -0.119 0.2 0.949 intMono L2
ENSG00000256262 USP30-AS1 -518278 sc-eQTL 6.88e-01 0.0722 0.18 0.949 intMono L2
ENSG00000075856 SART3 -25726 sc-eQTL 5.04e-01 0.135 0.203 0.948 ncMono L2
ENSG00000076555 ACACB -580921 sc-eQTL 4.89e-01 -0.133 0.192 0.948 ncMono L2
ENSG00000084112 SSH1 -321916 sc-eQTL 7.15e-01 0.0671 0.183 0.948 ncMono L2
ENSG00000110851 PRDM4 774402 sc-eQTL 5.03e-01 -0.121 0.181 0.948 ncMono L2
ENSG00000110876 SELPLG -98285 sc-eQTL 7.09e-01 -0.0414 0.111 0.948 ncMono L2
ENSG00000110880 CORO1C -195922 sc-eQTL 7.31e-01 -0.0702 0.204 0.948 ncMono L2
ENSG00000110906 KCTD10 -941685 sc-eQTL 3.31e-01 0.207 0.212 0.948 ncMono L2
ENSG00000135093 USP30 -487415 sc-eQTL 2.04e-01 -0.278 0.218 0.948 ncMono L2
ENSG00000136003 ISCU -26908 sc-eQTL 9.56e-02 -0.316 0.189 0.948 ncMono L2
ENSG00000136045 PWP1 849875 sc-eQTL 6.39e-01 0.0913 0.194 0.948 ncMono L2
ENSG00000151148 UBE3B -941728 sc-eQTL 6.66e-01 0.0928 0.215 0.948 ncMono L2
ENSG00000174600 CMKLR1 196357 sc-eQTL 8.86e-01 0.0264 0.184 0.948 ncMono L2
ENSG00000189046 ALKBH2 -557957 sc-eQTL 2.27e-01 -0.26 0.214 0.948 ncMono L2
ENSG00000198855 FICD 20397 sc-eQTL 9.07e-01 0.023 0.197 0.948 ncMono L2
ENSG00000256262 USP30-AS1 -518278 sc-eQTL 5.45e-01 -0.12 0.198 0.948 ncMono L2
ENSG00000075856 SART3 -25726 sc-eQTL 7.85e-01 -0.0595 0.218 0.946 pDC L2
ENSG00000076248 UNG -561900 sc-eQTL 2.29e-01 0.244 0.203 0.946 pDC L2
ENSG00000076555 ACACB -580921 sc-eQTL 8.11e-02 0.364 0.207 0.946 pDC L2
ENSG00000084112 SSH1 -321916 sc-eQTL 4.43e-01 0.169 0.22 0.946 pDC L2
ENSG00000110851 PRDM4 774402 sc-eQTL 8.63e-01 0.0424 0.244 0.946 pDC L2
ENSG00000110876 SELPLG -98285 sc-eQTL 4.41e-01 -0.112 0.145 0.946 pDC L2
ENSG00000110880 CORO1C -195922 sc-eQTL 5.63e-01 0.0927 0.16 0.946 pDC L2
ENSG00000110906 KCTD10 -941685 sc-eQTL 6.30e-01 -0.119 0.246 0.946 pDC L2
ENSG00000135093 USP30 -487415 sc-eQTL 5.48e-03 0.592 0.21 0.946 pDC L2
ENSG00000136003 ISCU -26908 sc-eQTL 2.29e-01 -0.219 0.182 0.946 pDC L2
ENSG00000136045 PWP1 849875 sc-eQTL 1.66e-01 0.298 0.214 0.946 pDC L2
ENSG00000151148 UBE3B -941728 sc-eQTL 3.36e-01 -0.224 0.232 0.946 pDC L2
ENSG00000174600 CMKLR1 196357 sc-eQTL 9.37e-02 0.25 0.148 0.946 pDC L2
ENSG00000189046 ALKBH2 -557957 sc-eQTL 5.45e-02 -0.401 0.207 0.946 pDC L2
ENSG00000198855 FICD 20397 sc-eQTL 3.46e-01 0.198 0.209 0.946 pDC L2
ENSG00000256262 USP30-AS1 -518278 sc-eQTL 3.14e-01 0.195 0.193 0.946 pDC L2
ENSG00000257221 AC007569.1 -92994 sc-eQTL 2.11e-01 0.255 0.203 0.946 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000075856 SART3 -25726 eQTL 5.24e-25 -0.39 0.0367 0.0 0.0019 0.0658
ENSG00000136003 ISCU -26927 eQTL 5.24e-89 -0.921 0.0413 0.0 0.0 0.0658
ENSG00000136045 PWP1 849875 eQTL 0.0344 0.0769 0.0363 0.0 0.0 0.0658
ENSG00000183160 TMEM119 -62646 eQTL 4.6e-05 0.134 0.0328 0.0 0.0 0.0658
ENSG00000256139 AC007637.1 -575544 eQTL 0.0166 -0.182 0.076 0.0 0.0 0.0658

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000075856 SART3 -25726 3.69e-05 3.58e-05 6.85e-06 1.72e-05 6.8e-06 1.68e-05 4.85e-05 6.11e-06 3.87e-05 1.8e-05 4.74e-05 2.16e-05 5.48e-05 1.65e-05 7.94e-06 2.32e-05 2.1e-05 2.99e-05 8.82e-06 8.12e-06 1.88e-05 3.78e-05 3.55e-05 1.04e-05 5.46e-05 1.01e-05 1.74e-05 1.52e-05 3.53e-05 3.09e-05 2.56e-05 1.99e-06 3.37e-06 7.73e-06 1.39e-05 6.68e-06 3.71e-06 3.52e-06 6e-06 3.81e-06 1.86e-06 4.2e-05 4.1e-06 4.6e-07 2.87e-06 4.93e-06 4.68e-06 2.07e-06 1.5e-06
ENSG00000110851 \N 774402 4.37e-07 4.63e-07 6.42e-08 3.89e-07 1.05e-07 3.24e-07 5.49e-07 6.57e-08 3.66e-07 1.46e-07 4.39e-07 3.36e-07 7.02e-07 1.1e-07 5.69e-08 9.35e-08 8.64e-08 3.02e-07 9.97e-08 1.3e-07 2.05e-07 2.51e-07 4.13e-07 4.81e-08 6.18e-07 1.71e-07 1.33e-07 1.48e-07 2.03e-07 6.98e-07 1.88e-07 3.72e-08 5.75e-08 1.77e-07 3.68e-07 5.32e-08 1.64e-07 1.46e-07 8.06e-08 4.15e-08 4.49e-08 5.09e-07 6.58e-08 7.3e-08 3.41e-08 1.25e-08 1.2e-07 3.09e-09 5.52e-08
ENSG00000136003 ISCU -26927 3.63e-05 3.54e-05 6.78e-06 1.7e-05 6.9e-06 1.65e-05 4.75e-05 5.92e-06 3.78e-05 1.77e-05 4.65e-05 2.14e-05 5.36e-05 1.64e-05 7.75e-06 2.23e-05 2.05e-05 2.95e-05 8.79e-06 7.97e-06 1.82e-05 3.72e-05 3.52e-05 1.02e-05 5.36e-05 9.82e-06 1.71e-05 1.49e-05 3.51e-05 3.04e-05 2.51e-05 1.93e-06 3.24e-06 7.83e-06 1.37e-05 6.4e-06 3.68e-06 3.5e-06 5.92e-06 3.69e-06 1.87e-06 4.15e-05 4e-06 4.31e-07 2.79e-06 4.81e-06 4.65e-06 1.98e-06 1.56e-06
ENSG00000183160 TMEM119 -62646 2.04e-05 2.58e-05 4.37e-06 1.5e-05 3.78e-06 1.09e-05 2.7e-05 3.73e-06 2.37e-05 9.53e-06 2.74e-05 1.48e-05 3.63e-05 9.29e-06 5.19e-06 1.03e-05 1.07e-05 1.97e-05 5.69e-06 5.3e-06 9.54e-06 2.11e-05 2.47e-05 4.9e-06 3.84e-05 5.97e-06 8.28e-06 8.11e-06 2.12e-05 1.77e-05 1.31e-05 1.33e-06 1.47e-06 4.95e-06 1.08e-05 4.14e-06 2.04e-06 2.86e-06 3.24e-06 2.67e-06 1.21e-06 2.87e-05 2.64e-06 3.57e-07 1.33e-06 2.68e-06 2.6e-06 1.3e-06 1.32e-06