logo

Genes within 1Mb (chr12:108527172:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000075856 SART3 -34228 sc-eQTL 2.08e-01 -0.298 0.236 0.95 CD4_CTL L2
ENSG00000076248 UNG -570402 sc-eQTL 5.98e-01 -0.112 0.213 0.95 CD4_CTL L2
ENSG00000076555 ACACB -589423 sc-eQTL 4.16e-01 0.164 0.201 0.95 CD4_CTL L2
ENSG00000084112 SSH1 -330418 sc-eQTL 2.54e-01 0.247 0.216 0.95 CD4_CTL L2
ENSG00000110851 PRDM4 765900 sc-eQTL 8.84e-02 0.381 0.222 0.95 CD4_CTL L2
ENSG00000110876 SELPLG -106787 sc-eQTL 6.62e-01 0.0669 0.153 0.95 CD4_CTL L2
ENSG00000110906 KCTD10 -950187 sc-eQTL 6.97e-01 -0.0922 0.236 0.95 CD4_CTL L2
ENSG00000135093 USP30 -495917 sc-eQTL 7.24e-01 -0.0767 0.217 0.95 CD4_CTL L2
ENSG00000136003 ISCU -35410 sc-eQTL 2.84e-01 -0.212 0.198 0.95 CD4_CTL L2
ENSG00000136045 PWP1 841373 sc-eQTL 3.36e-01 0.216 0.224 0.95 CD4_CTL L2
ENSG00000151148 UBE3B -950230 sc-eQTL 8.72e-01 -0.0378 0.235 0.95 CD4_CTL L2
ENSG00000189046 ALKBH2 -566459 sc-eQTL 5.71e-01 -0.128 0.225 0.95 CD4_CTL L2
ENSG00000198855 FICD 11895 sc-eQTL 5.14e-01 0.133 0.204 0.95 CD4_CTL L2
ENSG00000256139 AC007637.1 -584046 sc-eQTL 1.45e-01 0.249 0.17 0.95 CD4_CTL L2
ENSG00000256262 USP30-AS1 -526780 sc-eQTL 3.19e-01 -0.225 0.225 0.95 CD4_CTL L2
ENSG00000075856 SART3 -34228 sc-eQTL 1.26e-01 0.354 0.23 0.949 CD8_TCM L2
ENSG00000076248 UNG -570402 sc-eQTL 3.33e-01 0.196 0.202 0.949 CD8_TCM L2
ENSG00000076555 ACACB -589423 sc-eQTL 7.14e-01 -0.0773 0.21 0.949 CD8_TCM L2
ENSG00000084112 SSH1 -330418 sc-eQTL 2.10e-01 0.274 0.218 0.949 CD8_TCM L2
ENSG00000110851 PRDM4 765900 sc-eQTL 4.17e-01 0.164 0.202 0.949 CD8_TCM L2
ENSG00000110876 SELPLG -106787 sc-eQTL 6.20e-01 -0.0651 0.131 0.949 CD8_TCM L2
ENSG00000110880 CORO1C -204424 sc-eQTL 7.49e-02 0.344 0.192 0.949 CD8_TCM L2
ENSG00000110906 KCTD10 -950187 sc-eQTL 4.97e-01 0.142 0.209 0.949 CD8_TCM L2
ENSG00000135093 USP30 -495917 sc-eQTL 5.32e-01 0.135 0.215 0.949 CD8_TCM L2
ENSG00000136003 ISCU -35410 sc-eQTL 1.23e-03 -0.662 0.202 0.949 CD8_TCM L2
ENSG00000136045 PWP1 841373 sc-eQTL 6.59e-01 -0.0966 0.218 0.949 CD8_TCM L2
ENSG00000151148 UBE3B -950230 sc-eQTL 4.37e-01 -0.177 0.227 0.949 CD8_TCM L2
ENSG00000174600 CMKLR1 187855 sc-eQTL 7.18e-01 0.0265 0.0731 0.949 CD8_TCM L2
ENSG00000189046 ALKBH2 -566459 sc-eQTL 3.73e-01 0.193 0.216 0.949 CD8_TCM L2
ENSG00000198855 FICD 11895 sc-eQTL 4.77e-01 -0.147 0.206 0.949 CD8_TCM L2
ENSG00000256262 USP30-AS1 -526780 sc-eQTL 3.83e-01 -0.178 0.203 0.949 CD8_TCM L2
ENSG00000075856 SART3 -34228 sc-eQTL 8.25e-01 -0.0591 0.267 0.948 PB L2
ENSG00000076248 UNG -570402 sc-eQTL 3.04e-01 -0.248 0.24 0.948 PB L2
ENSG00000076555 ACACB -589423 sc-eQTL 4.17e-01 0.182 0.223 0.948 PB L2
ENSG00000084112 SSH1 -330418 sc-eQTL 2.52e-01 0.285 0.247 0.948 PB L2
ENSG00000110851 PRDM4 765900 sc-eQTL 6.13e-01 -0.0948 0.187 0.948 PB L2
ENSG00000110876 SELPLG -106787 sc-eQTL 2.08e-01 0.205 0.162 0.948 PB L2
ENSG00000110880 CORO1C -204424 sc-eQTL 2.11e-02 0.558 0.239 0.948 PB L2
ENSG00000110906 KCTD10 -950187 sc-eQTL 4.96e-01 0.178 0.261 0.948 PB L2
ENSG00000135093 USP30 -495917 sc-eQTL 8.21e-01 0.0548 0.242 0.948 PB L2
ENSG00000136003 ISCU -35410 sc-eQTL 3.51e-01 -0.172 0.184 0.948 PB L2
ENSG00000136045 PWP1 841373 sc-eQTL 3.09e-01 -0.228 0.223 0.948 PB L2
ENSG00000151148 UBE3B -950230 sc-eQTL 4.83e-01 0.175 0.248 0.948 PB L2
ENSG00000189046 ALKBH2 -566459 sc-eQTL 7.74e-01 0.0731 0.254 0.948 PB L2
ENSG00000198855 FICD 11895 sc-eQTL 8.55e-01 -0.0334 0.183 0.948 PB L2
ENSG00000256262 USP30-AS1 -526780 sc-eQTL 6.54e-01 -0.106 0.236 0.948 PB L2
ENSG00000257221 AC007569.1 -101496 sc-eQTL 2.27e-01 0.268 0.22 0.948 PB L2
ENSG00000075856 SART3 -34228 sc-eQTL 7.85e-01 -0.0595 0.218 0.946 pDC L2
ENSG00000076248 UNG -570402 sc-eQTL 2.29e-01 0.244 0.203 0.946 pDC L2
ENSG00000076555 ACACB -589423 sc-eQTL 8.11e-02 0.364 0.207 0.946 pDC L2
ENSG00000084112 SSH1 -330418 sc-eQTL 4.43e-01 0.169 0.22 0.946 pDC L2
ENSG00000110851 PRDM4 765900 sc-eQTL 8.63e-01 0.0424 0.244 0.946 pDC L2
ENSG00000110876 SELPLG -106787 sc-eQTL 4.41e-01 -0.112 0.145 0.946 pDC L2
ENSG00000110880 CORO1C -204424 sc-eQTL 5.63e-01 0.0927 0.16 0.946 pDC L2
ENSG00000110906 KCTD10 -950187 sc-eQTL 6.30e-01 -0.119 0.246 0.946 pDC L2
ENSG00000135093 USP30 -495917 sc-eQTL 5.48e-03 0.592 0.21 0.946 pDC L2
ENSG00000136003 ISCU -35410 sc-eQTL 2.29e-01 -0.219 0.182 0.946 pDC L2
ENSG00000136045 PWP1 841373 sc-eQTL 1.66e-01 0.298 0.214 0.946 pDC L2
ENSG00000151148 UBE3B -950230 sc-eQTL 3.36e-01 -0.224 0.232 0.946 pDC L2
ENSG00000174600 CMKLR1 187855 sc-eQTL 9.37e-02 0.25 0.148 0.946 pDC L2
ENSG00000189046 ALKBH2 -566459 sc-eQTL 5.45e-02 -0.401 0.207 0.946 pDC L2
ENSG00000198855 FICD 11895 sc-eQTL 3.46e-01 0.198 0.209 0.946 pDC L2
ENSG00000256262 USP30-AS1 -526780 sc-eQTL 3.14e-01 0.195 0.193 0.946 pDC L2
ENSG00000257221 AC007569.1 -101496 sc-eQTL 2.11e-01 0.255 0.203 0.946 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000075856 SART3 -34228 eQTL 5.24e-25 -0.39 0.0367 0.0 0.00189 0.0658
ENSG00000136003 ISCU -35429 eQTL 5.24e-89 -0.921 0.0413 0.0 0.0 0.0658
ENSG00000136045 PWP1 841373 eQTL 0.0344 0.0769 0.0363 0.0 0.0 0.0658
ENSG00000183160 TMEM119 -71148 eQTL 4.6e-05 0.134 0.0328 0.0 0.0 0.0658
ENSG00000256139 AC007637.1 -584046 eQTL 0.0166 -0.182 0.076 0.0 0.0 0.0658

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000075856 SART3 -34228 1.34e-05 1.67e-05 2.44e-06 8.95e-06 2.44e-06 6.28e-06 2.01e-05 3.29e-06 1.5e-05 8.22e-06 2.11e-05 6.75e-06 2.88e-05 6.35e-06 5.19e-06 9.44e-06 8.14e-06 1.18e-05 4.25e-06 3.64e-06 8.02e-06 1.55e-05 1.42e-05 4.28e-06 2.42e-05 5.01e-06 7.96e-06 7.29e-06 1.54e-05 1.25e-05 1.12e-05 1.08e-06 1.51e-06 4e-06 6.34e-06 3.35e-06 1.79e-06 2.67e-06 2.2e-06 1.76e-06 9.63e-07 2.26e-05 2.52e-06 1.59e-07 9.84e-07 2.83e-06 2.6e-06 8.27e-07 7.09e-07
ENSG00000110851 \N 765900 5.74e-07 3.47e-07 9.16e-08 3.48e-07 1.13e-07 1.74e-07 4.42e-07 9.91e-08 2.76e-07 2.16e-07 4.39e-07 2.33e-07 5.54e-07 1.07e-07 1.9e-07 1.76e-07 1.73e-07 3.12e-07 2.12e-07 1.53e-07 2.09e-07 3.1e-07 3.07e-07 1.06e-07 6.18e-07 2.46e-07 2.08e-07 2.63e-07 2.57e-07 3.71e-07 2.31e-07 7.5e-08 4.57e-08 1.23e-07 2.85e-07 7.57e-08 1.05e-07 7.64e-08 4.23e-08 2.62e-08 1.02e-07 3.85e-07 2.47e-08 1.88e-08 1.14e-07 2.64e-08 7.89e-08 3.09e-08 6.36e-08
ENSG00000136003 ISCU -35429 1.3e-05 1.6e-05 2.5e-06 8.67e-06 2.48e-06 6.21e-06 1.97e-05 3.1e-06 1.45e-05 7.94e-06 2.08e-05 6.86e-06 2.82e-05 6.24e-06 5.09e-06 9.23e-06 8.2e-06 1.16e-05 4.11e-06 3.61e-06 7.92e-06 1.5e-05 1.39e-05 4.2e-06 2.4e-05 5.1e-06 7.82e-06 7.09e-06 1.5e-05 1.22e-05 1.08e-05 1.04e-06 1.49e-06 3.89e-06 6.2e-06 3.29e-06 1.72e-06 2.61e-06 2.22e-06 1.72e-06 9.26e-07 2.19e-05 2.48e-06 1.47e-07 9.58e-07 2.79e-06 2.51e-06 8.11e-07 6.24e-07
ENSG00000183160 TMEM119 -71148 8.08e-06 1.02e-05 1.24e-06 5.09e-06 2.35e-06 4.22e-06 1.03e-05 2.19e-06 9.39e-06 5.51e-06 1.31e-05 5.02e-06 1.59e-05 3.65e-06 3.15e-06 6.36e-06 4.62e-06 6.43e-06 2.66e-06 2.82e-06 5.79e-06 9.86e-06 7.56e-06 2.8e-06 1.29e-05 3.85e-06 5.19e-06 4.66e-06 9.12e-06 7.87e-06 5.8e-06 7.78e-07 1.12e-06 2.98e-06 4.02e-06 2.21e-06 1.71e-06 1.96e-06 1.63e-06 1e-06 8.05e-07 1.36e-05 1.45e-06 1.65e-07 6.97e-07 1.74e-06 1.35e-06 7.8e-07 4.64e-07