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Genes within 1Mb (chr12:107496529:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000008405 CRY1 402980 sc-eQTL 1.72e-01 -0.226 0.165 0.05 CD4_CTL L2
ENSG00000110851 PRDM4 -264743 sc-eQTL 6.32e-01 -0.102 0.213 0.05 CD4_CTL L2
ENSG00000111785 RIC8B 721908 sc-eQTL 4.32e-01 0.167 0.212 0.05 CD4_CTL L2
ENSG00000120832 MTERF2 509369 sc-eQTL 1.39e-01 0.3 0.202 0.05 CD4_CTL L2
ENSG00000136045 PWP1 -189270 sc-eQTL 8.48e-01 0.0409 0.213 0.05 CD4_CTL L2
ENSG00000151135 TMEM263 540810 sc-eQTL 6.37e-01 -0.102 0.215 0.05 CD4_CTL L2
ENSG00000151136 BTBD11 178108 sc-eQTL 3.73e-01 0.151 0.169 0.05 CD4_CTL L2
ENSG00000260329 AC007541.1 541032 sc-eQTL 9.99e-01 0.000164 0.181 0.05 CD4_CTL L2
ENSG00000008405 CRY1 402980 sc-eQTL 2.80e-01 -0.185 0.171 0.051 CD8_TCM L2
ENSG00000110851 PRDM4 -264743 sc-eQTL 5.50e-02 -0.366 0.19 0.051 CD8_TCM L2
ENSG00000111785 RIC8B 721908 sc-eQTL 8.81e-02 0.333 0.194 0.051 CD8_TCM L2
ENSG00000120832 MTERF2 509369 sc-eQTL 4.92e-01 0.135 0.196 0.051 CD8_TCM L2
ENSG00000136045 PWP1 -189270 sc-eQTL 2.41e-01 -0.242 0.206 0.051 CD8_TCM L2
ENSG00000151135 TMEM263 540810 sc-eQTL 2.53e-02 -0.451 0.2 0.051 CD8_TCM L2
ENSG00000151136 BTBD11 178108 sc-eQTL 6.38e-01 0.0805 0.171 0.051 CD8_TCM L2
ENSG00000174600 CMKLR1 -842788 sc-eQTL 4.62e-01 -0.0509 0.0691 0.051 CD8_TCM L2
ENSG00000260329 AC007541.1 541032 sc-eQTL 8.11e-01 -0.0444 0.186 0.051 CD8_TCM L2
ENSG00000008405 CRY1 402980 sc-eQTL 7.31e-01 -0.0577 0.167 0.05 NK_HLA L2
ENSG00000110851 PRDM4 -264743 sc-eQTL 8.64e-01 0.0342 0.2 0.05 NK_HLA L2
ENSG00000111785 RIC8B 721908 sc-eQTL 4.37e-01 -0.161 0.207 0.05 NK_HLA L2
ENSG00000120832 MTERF2 509369 sc-eQTL 7.36e-01 -0.071 0.21 0.05 NK_HLA L2
ENSG00000136045 PWP1 -189270 sc-eQTL 1.22e-01 -0.311 0.2 0.05 NK_HLA L2
ENSG00000151135 TMEM263 540810 sc-eQTL 3.77e-01 -0.185 0.209 0.05 NK_HLA L2
ENSG00000151136 BTBD11 178108 sc-eQTL 9.57e-01 0.00975 0.179 0.05 NK_HLA L2
ENSG00000174600 CMKLR1 -842788 sc-eQTL 9.31e-01 -0.0126 0.146 0.05 NK_HLA L2
ENSG00000260329 AC007541.1 541032 sc-eQTL 1.20e-01 -0.298 0.191 0.05 NK_HLA L2
ENSG00000008405 CRY1 402980 sc-eQTL 1.75e-02 -0.529 0.22 0.052 gdT L2
ENSG00000110851 PRDM4 -264743 sc-eQTL 7.18e-01 -0.0911 0.252 0.052 gdT L2
ENSG00000111785 RIC8B 721908 sc-eQTL 1.87e-01 -0.315 0.238 0.052 gdT L2
ENSG00000120832 MTERF2 509369 sc-eQTL 1.88e-02 0.598 0.252 0.052 gdT L2
ENSG00000136045 PWP1 -189270 sc-eQTL 2.17e-01 0.323 0.26 0.052 gdT L2
ENSG00000151135 TMEM263 540810 sc-eQTL 7.23e-01 0.0834 0.234 0.052 gdT L2
ENSG00000151136 BTBD11 178108 sc-eQTL 2.23e-01 0.253 0.207 0.052 gdT L2
ENSG00000174600 CMKLR1 -842788 sc-eQTL 8.64e-01 -0.0274 0.16 0.052 gdT L2
ENSG00000260329 AC007541.1 541032 sc-eQTL 5.81e-01 -0.129 0.233 0.052 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000110851 PRDM4 -264743 eQTL 0.000103 -0.191 0.049 0.0 0.0 0.0579
ENSG00000120832 MTERF2 509369 eQTL 9.15e-05 0.19 0.0484 0.0113 0.00454 0.0579
ENSG00000136045 PWP1 -189270 eQTL 0.00422 -0.105 0.0366 0.0 0.0 0.0579

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000110851 PRDM4 -264743 1.3e-06 1.08e-06 2.57e-07 1.19e-06 3.83e-07 6.02e-07 1.53e-06 3.99e-07 1.42e-06 6.24e-07 1.85e-06 8.77e-07 2.38e-06 2.92e-07 5.1e-07 9.07e-07 9.15e-07 8.27e-07 8.3e-07 5.23e-07 8.11e-07 1.78e-06 9.66e-07 5.57e-07 2.21e-06 6.57e-07 9.3e-07 9.43e-07 1.47e-06 1.22e-06 7.64e-07 3.01e-07 2.85e-07 6.83e-07 5.32e-07 4.6e-07 6.17e-07 2.79e-07 4.52e-07 3.15e-07 2.8e-07 1.6e-06 1.38e-07 9.61e-08 3.14e-07 2.14e-07 2.38e-07 9.26e-08 1.9e-07
ENSG00000151135 \N 540810 5.74e-07 2.88e-07 8.55e-08 2.58e-07 1.1e-07 1.54e-07 3.94e-07 8.37e-08 2.56e-07 1.7e-07 3.47e-07 2.49e-07 4.27e-07 9.15e-08 1.24e-07 1.39e-07 1.01e-07 2.96e-07 1.36e-07 8.25e-08 1.65e-07 2.51e-07 2.56e-07 9.63e-08 3.7e-07 2.01e-07 1.83e-07 1.85e-07 2.11e-07 2.75e-07 1.88e-07 7.4e-08 5.73e-08 1.17e-07 1.69e-07 5.41e-08 6.87e-08 6.97e-08 4.78e-08 7.89e-08 4.49e-08 2.72e-07 1.96e-08 1.71e-08 1.08e-07 1.75e-08 9.52e-08 3.35e-09 5.44e-08