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Genes within 1Mb (chr12:105939781:A:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000013503 POLR3B -417967 sc-eQTL 5.62e-01 0.101 0.173 0.052 DC L1
ENSG00000111785 RIC8B -834840 sc-eQTL 7.05e-01 -0.0679 0.179 0.052 DC L1
ENSG00000136026 CKAP4 -364498 sc-eQTL 6.86e-01 -0.0483 0.119 0.052 DC L1
ENSG00000136044 APPL2 703578 sc-eQTL 3.78e-01 0.157 0.178 0.052 DC L1
ENSG00000136051 WASHC4 832457 sc-eQTL 5.53e-01 -0.0854 0.144 0.052 DC L1
ENSG00000136052 SLC41A2 981037 sc-eQTL 7.86e-01 -0.0331 0.122 0.052 DC L1
ENSG00000151131 C12orf45 953465 sc-eQTL 9.81e-01 0.00255 0.109 0.052 DC L1
ENSG00000166046 TCP11L2 -362148 sc-eQTL 9.64e-01 -0.00819 0.179 0.052 DC L1
ENSG00000235162 C12orf75 704491 sc-eQTL 2.16e-01 -0.0904 0.0728 0.052 DC L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000013503 POLR3B -417967 sc-eQTL 8.66e-01 0.0326 0.193 0.054 B_Activated L2
ENSG00000111785 RIC8B -834840 sc-eQTL 8.27e-01 -0.0427 0.195 0.054 B_Activated L2
ENSG00000136026 CKAP4 -364498 sc-eQTL 2.67e-01 0.203 0.182 0.054 B_Activated L2
ENSG00000136044 APPL2 703578 sc-eQTL 2.61e-01 0.232 0.206 0.054 B_Activated L2
ENSG00000136051 WASHC4 832457 sc-eQTL 3.98e-01 0.166 0.196 0.054 B_Activated L2
ENSG00000136052 SLC41A2 981037 sc-eQTL 6.16e-01 -0.0735 0.147 0.054 B_Activated L2
ENSG00000151131 C12orf45 953465 sc-eQTL 4.70e-02 0.403 0.201 0.054 B_Activated L2
ENSG00000166046 TCP11L2 -362148 sc-eQTL 8.05e-01 -0.0503 0.204 0.054 B_Activated L2
ENSG00000235162 C12orf75 704491 sc-eQTL 5.14e-01 -0.129 0.197 0.054 B_Activated L2
ENSG00000013503 POLR3B -417967 sc-eQTL 1.72e-01 0.246 0.179 0.05 CD4_CTL L2
ENSG00000111785 RIC8B -834840 sc-eQTL 7.86e-02 -0.333 0.188 0.05 CD4_CTL L2
ENSG00000136026 CKAP4 -364498 sc-eQTL 9.95e-02 -0.244 0.148 0.05 CD4_CTL L2
ENSG00000136044 APPL2 703578 sc-eQTL 7.86e-01 -0.0502 0.185 0.05 CD4_CTL L2
ENSG00000136051 WASHC4 832457 sc-eQTL 3.49e-01 -0.166 0.177 0.05 CD4_CTL L2
ENSG00000151131 C12orf45 953465 sc-eQTL 3.13e-01 0.18 0.178 0.05 CD4_CTL L2
ENSG00000166046 TCP11L2 -362148 sc-eQTL 3.26e-01 0.184 0.187 0.05 CD4_CTL L2
ENSG00000235162 C12orf75 704491 sc-eQTL 6.60e-01 -0.0474 0.108 0.05 CD4_CTL L2
ENSG00000013503 POLR3B -417967 sc-eQTL 1.15e-01 0.303 0.192 0.051 CD8_TCM L2
ENSG00000111785 RIC8B -834840 sc-eQTL 5.90e-01 -0.0998 0.185 0.051 CD8_TCM L2
ENSG00000136026 CKAP4 -364498 sc-eQTL 5.32e-02 0.324 0.167 0.051 CD8_TCM L2
ENSG00000136044 APPL2 703578 sc-eQTL 3.61e-01 -0.173 0.189 0.051 CD8_TCM L2
ENSG00000136051 WASHC4 832457 sc-eQTL 5.94e-01 -0.102 0.19 0.051 CD8_TCM L2
ENSG00000151131 C12orf45 953465 sc-eQTL 6.11e-01 0.103 0.203 0.051 CD8_TCM L2
ENSG00000166046 TCP11L2 -362148 sc-eQTL 6.83e-01 -0.0664 0.162 0.051 CD8_TCM L2
ENSG00000235162 C12orf75 704491 sc-eQTL 4.30e-01 0.142 0.179 0.051 CD8_TCM L2
ENSG00000013503 POLR3B -417967 sc-eQTL 5.67e-01 -0.102 0.177 0.051 NK_CD56bright L2
ENSG00000074590 NUAK1 -200252 sc-eQTL 3.35e-01 0.149 0.154 0.051 NK_CD56bright L2
ENSG00000111785 RIC8B -834840 sc-eQTL 2.29e-01 0.231 0.192 0.051 NK_CD56bright L2
ENSG00000136026 CKAP4 -364498 sc-eQTL 8.88e-01 -0.0205 0.145 0.051 NK_CD56bright L2
ENSG00000136044 APPL2 703578 sc-eQTL 7.23e-01 -0.0614 0.173 0.051 NK_CD56bright L2
ENSG00000136051 WASHC4 832457 sc-eQTL 1.13e-01 0.283 0.177 0.051 NK_CD56bright L2
ENSG00000151131 C12orf45 953465 sc-eQTL 6.79e-01 -0.08 0.193 0.051 NK_CD56bright L2
ENSG00000166046 TCP11L2 -362148 sc-eQTL 1.45e-01 0.27 0.184 0.051 NK_CD56bright L2
ENSG00000235162 C12orf75 704491 sc-eQTL 8.50e-01 0.0318 0.167 0.051 NK_CD56bright L2
ENSG00000013503 POLR3B -417967 sc-eQTL 3.68e-01 0.167 0.185 0.053 NK_HLA L2
ENSG00000074590 NUAK1 -200252 sc-eQTL 1.27e-01 -0.275 0.18 0.053 NK_HLA L2
ENSG00000111785 RIC8B -834840 sc-eQTL 4.28e-01 -0.151 0.19 0.053 NK_HLA L2
ENSG00000136026 CKAP4 -364498 sc-eQTL 3.52e-01 -0.155 0.167 0.053 NK_HLA L2
ENSG00000136044 APPL2 703578 sc-eQTL 8.66e-01 -0.0311 0.184 0.053 NK_HLA L2
ENSG00000136051 WASHC4 832457 sc-eQTL 8.29e-01 -0.0412 0.19 0.053 NK_HLA L2
ENSG00000151131 C12orf45 953465 sc-eQTL 3.61e-01 -0.175 0.191 0.053 NK_HLA L2
ENSG00000166046 TCP11L2 -362148 sc-eQTL 9.08e-01 -0.0218 0.188 0.053 NK_HLA L2
ENSG00000235162 C12orf75 704491 sc-eQTL 7.80e-01 0.0386 0.138 0.053 NK_HLA L2
ENSG00000013503 POLR3B -417967 sc-eQTL 5.49e-01 0.153 0.255 0.052 PB L2
ENSG00000111785 RIC8B -834840 sc-eQTL 1.88e-02 0.53 0.222 0.052 PB L2
ENSG00000136026 CKAP4 -364498 sc-eQTL 1.04e-01 0.232 0.142 0.052 PB L2
ENSG00000136044 APPL2 703578 sc-eQTL 5.04e-01 -0.173 0.258 0.052 PB L2
ENSG00000136051 WASHC4 832457 sc-eQTL 9.75e-02 -0.364 0.218 0.052 PB L2
ENSG00000136052 SLC41A2 981037 sc-eQTL 9.36e-01 0.0189 0.235 0.052 PB L2
ENSG00000151131 C12orf45 953465 sc-eQTL 4.08e-01 -0.192 0.231 0.052 PB L2
ENSG00000166046 TCP11L2 -362148 sc-eQTL 3.47e-01 0.225 0.238 0.052 PB L2
ENSG00000235162 C12orf75 704491 sc-eQTL 5.40e-01 0.0996 0.162 0.052 PB L2
ENSG00000013503 POLR3B -417967 sc-eQTL 2.29e-01 0.228 0.189 0.05 Pro_T L2
ENSG00000111785 RIC8B -834840 sc-eQTL 2.12e-01 0.222 0.178 0.05 Pro_T L2
ENSG00000136026 CKAP4 -364498 sc-eQTL 9.91e-01 -0.00112 0.099 0.05 Pro_T L2
ENSG00000136044 APPL2 703578 sc-eQTL 1.81e-01 -0.24 0.179 0.05 Pro_T L2
ENSG00000136051 WASHC4 832457 sc-eQTL 3.48e-01 -0.187 0.199 0.05 Pro_T L2
ENSG00000151131 C12orf45 953465 sc-eQTL 2.77e-01 -0.166 0.152 0.05 Pro_T L2
ENSG00000166046 TCP11L2 -362148 sc-eQTL 2.40e-01 0.179 0.152 0.05 Pro_T L2
ENSG00000235162 C12orf75 704491 sc-eQTL 2.33e-01 -0.152 0.127 0.05 Pro_T L2
ENSG00000013503 POLR3B -417967 sc-eQTL 6.26e-01 0.0853 0.175 0.051 cDC L2
ENSG00000111785 RIC8B -834840 sc-eQTL 5.96e-01 -0.098 0.184 0.051 cDC L2
ENSG00000136026 CKAP4 -364498 sc-eQTL 5.47e-01 -0.0782 0.13 0.051 cDC L2
ENSG00000136044 APPL2 703578 sc-eQTL 6.00e-01 0.0967 0.184 0.051 cDC L2
ENSG00000136051 WASHC4 832457 sc-eQTL 7.57e-01 0.051 0.164 0.051 cDC L2
ENSG00000136052 SLC41A2 981037 sc-eQTL 7.10e-01 0.0535 0.143 0.051 cDC L2
ENSG00000151131 C12orf45 953465 sc-eQTL 9.49e-01 0.00813 0.127 0.051 cDC L2
ENSG00000166046 TCP11L2 -362148 sc-eQTL 5.88e-01 -0.105 0.193 0.051 cDC L2
ENSG00000235162 C12orf75 704491 sc-eQTL 7.89e-01 -0.0371 0.138 0.051 cDC L2
ENSG00000013503 POLR3B -417967 sc-eQTL 1.90e-01 0.267 0.203 0.052 gdT L2
ENSG00000111785 RIC8B -834840 sc-eQTL 6.97e-01 0.0807 0.207 0.052 gdT L2
ENSG00000136026 CKAP4 -364498 sc-eQTL 8.37e-01 -0.0401 0.194 0.052 gdT L2
ENSG00000136044 APPL2 703578 sc-eQTL 7.61e-02 -0.34 0.19 0.052 gdT L2
ENSG00000136051 WASHC4 832457 sc-eQTL 7.70e-01 0.0664 0.227 0.052 gdT L2
ENSG00000151131 C12orf45 953465 sc-eQTL 3.80e-01 -0.199 0.225 0.052 gdT L2
ENSG00000166046 TCP11L2 -362148 sc-eQTL 2.79e-01 -0.229 0.211 0.052 gdT L2
ENSG00000235162 C12orf75 704491 sc-eQTL 9.61e-01 0.00883 0.179 0.052 gdT L2
ENSG00000013503 POLR3B -417967 sc-eQTL 2.72e-01 -0.193 0.175 0.051 intMono L2
ENSG00000111785 RIC8B -834840 sc-eQTL 9.33e-01 -0.0145 0.172 0.051 intMono L2
ENSG00000136026 CKAP4 -364498 sc-eQTL 4.86e-01 -0.125 0.179 0.051 intMono L2
ENSG00000136044 APPL2 703578 sc-eQTL 5.64e-01 -0.108 0.187 0.051 intMono L2
ENSG00000136051 WASHC4 832457 sc-eQTL 8.68e-01 0.0264 0.158 0.051 intMono L2
ENSG00000151131 C12orf45 953465 sc-eQTL 2.97e-01 -0.2 0.191 0.051 intMono L2
ENSG00000166046 TCP11L2 -362148 sc-eQTL 8.77e-02 0.342 0.199 0.051 intMono L2
ENSG00000235162 C12orf75 704491 sc-eQTL 6.37e-02 -0.306 0.164 0.051 intMono L2
ENSG00000013503 POLR3B -417967 sc-eQTL 4.04e-01 0.137 0.164 0.052 ncMono L2
ENSG00000111785 RIC8B -834840 sc-eQTL 2.43e-01 -0.186 0.159 0.052 ncMono L2
ENSG00000136026 CKAP4 -364498 sc-eQTL 1.31e-01 0.256 0.169 0.052 ncMono L2
ENSG00000136044 APPL2 703578 sc-eQTL 8.35e-01 0.0362 0.173 0.052 ncMono L2
ENSG00000136051 WASHC4 832457 sc-eQTL 4.93e-01 -0.0802 0.117 0.052 ncMono L2
ENSG00000151131 C12orf45 953465 sc-eQTL 9.03e-01 -0.0229 0.188 0.052 ncMono L2
ENSG00000166046 TCP11L2 -362148 sc-eQTL 1.44e-01 0.243 0.166 0.052 ncMono L2
ENSG00000235162 C12orf75 704491 sc-eQTL 8.41e-02 0.313 0.18 0.052 ncMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000074590 NUAK1 -200252 eQTL 0.0159 -0.127 0.0525 0.0 0.0 0.081
ENSG00000136026 CKAP4 -364498 pQTL 0.00681 0.0645 0.0238 0.00107 0.0 0.0773

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000013503 \N -417967 8.35e-07 4.93e-07 1.05e-07 3.48e-07 9.26e-08 1.74e-07 5.28e-07 1.37e-07 4.18e-07 2.26e-07 6.88e-07 3.61e-07 7.19e-07 1.1e-07 1.57e-07 2.18e-07 2.53e-07 3.74e-07 1.62e-07 1.17e-07 1.87e-07 3.76e-07 3.3e-07 1.36e-07 7.01e-07 2.39e-07 2.57e-07 2.19e-07 3.58e-07 4.61e-07 2.83e-07 7.6e-08 5.42e-08 1.36e-07 2.82e-07 6.94e-08 9.9e-08 6.89e-08 5.28e-08 6.05e-08 8.02e-08 4.55e-07 2.16e-08 1.84e-08 1.15e-07 1.78e-08 8.13e-08 3.09e-09 5.54e-08