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Genes within 1Mb (chr12:105856303:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000013503 POLR3B -501445 sc-eQTL 3.64e-01 -0.169 0.186 0.052 DC L1
ENSG00000111785 RIC8B -918318 sc-eQTL 8.09e-01 0.0466 0.192 0.052 DC L1
ENSG00000136026 CKAP4 -447976 sc-eQTL 9.85e-01 -0.00234 0.128 0.052 DC L1
ENSG00000136044 APPL2 620100 sc-eQTL 3.59e-01 -0.175 0.191 0.052 DC L1
ENSG00000136051 WASHC4 748979 sc-eQTL 4.40e-02 -0.309 0.152 0.052 DC L1
ENSG00000136052 SLC41A2 897559 sc-eQTL 3.60e-02 -0.273 0.129 0.052 DC L1
ENSG00000151131 C12orf45 869987 sc-eQTL 1.48e-01 0.169 0.116 0.052 DC L1
ENSG00000166046 TCP11L2 -445626 sc-eQTL 1.66e-01 0.266 0.191 0.052 DC L1
ENSG00000235162 C12orf75 621013 sc-eQTL 7.27e-01 0.0274 0.0783 0.052 DC L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000013503 POLR3B -501445 sc-eQTL 7.83e-01 -0.0555 0.201 0.05 CD4_CTL L2
ENSG00000111785 RIC8B -918318 sc-eQTL 3.65e-01 0.192 0.212 0.05 CD4_CTL L2
ENSG00000136026 CKAP4 -447976 sc-eQTL 1.77e-01 -0.224 0.166 0.05 CD4_CTL L2
ENSG00000136044 APPL2 620100 sc-eQTL 2.66e-01 0.23 0.206 0.05 CD4_CTL L2
ENSG00000136051 WASHC4 748979 sc-eQTL 8.22e-01 0.0447 0.198 0.05 CD4_CTL L2
ENSG00000151131 C12orf45 869987 sc-eQTL 2.85e-01 -0.214 0.199 0.05 CD4_CTL L2
ENSG00000166046 TCP11L2 -445626 sc-eQTL 6.72e-01 0.089 0.21 0.05 CD4_CTL L2
ENSG00000235162 C12orf75 621013 sc-eQTL 1.99e-01 -0.154 0.12 0.05 CD4_CTL L2
ENSG00000013503 POLR3B -501445 sc-eQTL 9.48e-01 -0.0135 0.207 0.053 CD8_TCM L2
ENSG00000111785 RIC8B -918318 sc-eQTL 1.31e-01 0.3 0.198 0.053 CD8_TCM L2
ENSG00000136026 CKAP4 -447976 sc-eQTL 4.60e-01 -0.134 0.18 0.053 CD8_TCM L2
ENSG00000136044 APPL2 620100 sc-eQTL 2.14e-01 0.252 0.202 0.053 CD8_TCM L2
ENSG00000136051 WASHC4 748979 sc-eQTL 8.95e-01 -0.0271 0.204 0.053 CD8_TCM L2
ENSG00000151131 C12orf45 869987 sc-eQTL 7.62e-01 0.0662 0.218 0.053 CD8_TCM L2
ENSG00000166046 TCP11L2 -445626 sc-eQTL 3.71e-01 0.156 0.174 0.053 CD8_TCM L2
ENSG00000235162 C12orf75 621013 sc-eQTL 9.34e-01 -0.016 0.193 0.053 CD8_TCM L2
ENSG00000013503 POLR3B -501445 sc-eQTL 6.28e-01 -0.0891 0.184 0.056 cDC L2
ENSG00000111785 RIC8B -918318 sc-eQTL 3.19e-01 0.194 0.194 0.056 cDC L2
ENSG00000136026 CKAP4 -447976 sc-eQTL 1.21e-01 -0.211 0.136 0.056 cDC L2
ENSG00000136044 APPL2 620100 sc-eQTL 4.45e-01 -0.148 0.194 0.056 cDC L2
ENSG00000136051 WASHC4 748979 sc-eQTL 4.41e-03 -0.488 0.169 0.056 cDC L2
ENSG00000136052 SLC41A2 897559 sc-eQTL 1.15e-01 -0.237 0.15 0.056 cDC L2
ENSG00000151131 C12orf45 869987 sc-eQTL 4.37e-01 0.104 0.134 0.056 cDC L2
ENSG00000166046 TCP11L2 -445626 sc-eQTL 3.55e-02 0.426 0.201 0.056 cDC L2
ENSG00000235162 C12orf75 621013 sc-eQTL 4.45e-01 0.111 0.145 0.056 cDC L2
ENSG00000013503 POLR3B -501445 sc-eQTL 2.45e-01 -0.266 0.228 0.055 gdT L2
ENSG00000111785 RIC8B -918318 sc-eQTL 6.33e-01 -0.111 0.232 0.055 gdT L2
ENSG00000136026 CKAP4 -447976 sc-eQTL 7.02e-01 -0.0836 0.218 0.055 gdT L2
ENSG00000136044 APPL2 620100 sc-eQTL 2.57e-01 0.245 0.215 0.055 gdT L2
ENSG00000136051 WASHC4 748979 sc-eQTL 3.80e-02 -0.526 0.251 0.055 gdT L2
ENSG00000151131 C12orf45 869987 sc-eQTL 9.78e-01 0.00705 0.254 0.055 gdT L2
ENSG00000166046 TCP11L2 -445626 sc-eQTL 6.10e-01 -0.121 0.237 0.055 gdT L2
ENSG00000235162 C12orf75 621013 sc-eQTL 1.24e-01 0.309 0.199 0.055 gdT L2
ENSG00000013503 POLR3B -501445 sc-eQTL 9.79e-01 0.0049 0.188 0.051 intMono L2
ENSG00000111785 RIC8B -918318 sc-eQTL 1.89e-01 -0.241 0.183 0.051 intMono L2
ENSG00000136026 CKAP4 -447976 sc-eQTL 2.08e-01 -0.241 0.191 0.051 intMono L2
ENSG00000136044 APPL2 620100 sc-eQTL 2.20e-01 0.246 0.2 0.051 intMono L2
ENSG00000136051 WASHC4 748979 sc-eQTL 9.12e-01 -0.0188 0.17 0.051 intMono L2
ENSG00000151131 C12orf45 869987 sc-eQTL 6.66e-01 0.0889 0.206 0.051 intMono L2
ENSG00000166046 TCP11L2 -445626 sc-eQTL 3.26e-01 -0.211 0.215 0.051 intMono L2
ENSG00000235162 C12orf75 621013 sc-eQTL 9.52e-01 -0.0107 0.178 0.051 intMono L2
ENSG00000013503 POLR3B -501445 sc-eQTL 4.55e-01 -0.159 0.213 0.054 pDC L2
ENSG00000111785 RIC8B -918318 sc-eQTL 5.00e-01 -0.139 0.205 0.054 pDC L2
ENSG00000136026 CKAP4 -447976 sc-eQTL 7.34e-01 0.0464 0.136 0.054 pDC L2
ENSG00000136044 APPL2 620100 sc-eQTL 8.39e-01 0.0428 0.21 0.054 pDC L2
ENSG00000136051 WASHC4 748979 sc-eQTL 4.39e-01 0.154 0.199 0.054 pDC L2
ENSG00000136052 SLC41A2 897559 sc-eQTL 5.60e-02 -0.295 0.153 0.054 pDC L2
ENSG00000151131 C12orf45 869987 sc-eQTL 9.94e-01 0.000942 0.135 0.054 pDC L2
ENSG00000166046 TCP11L2 -445626 sc-eQTL 4.53e-02 0.409 0.202 0.054 pDC L2
ENSG00000235162 C12orf75 621013 sc-eQTL 2.46e-01 -0.151 0.13 0.054 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000136026 CKAP4 -447976 pQTL 0.0223 -0.0617 0.027 0.0 0.0 0.0618

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000277715 \N -394456 7.76e-07 4.97e-07 1.07e-07 3.57e-07 1.05e-07 2.01e-07 5.28e-07 1.45e-07 4.43e-07 2.37e-07 5.93e-07 3.65e-07 7.36e-07 1.23e-07 2.14e-07 2.36e-07 3.13e-07 3.73e-07 1.97e-07 1.73e-07 2.09e-07 3.8e-07 3.45e-07 1.73e-07 7.42e-07 2.54e-07 2.62e-07 2.59e-07 3.58e-07 5.36e-07 2.6e-07 6.84e-08 5.31e-08 1.49e-07 3.04e-07 1.28e-07 8.28e-08 1.08e-07 6.72e-08 2.53e-08 1.22e-07 5.09e-07 2.92e-08 5.61e-09 1.33e-07 1.31e-08 1.21e-07 2.35e-08 5.13e-08