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Genes within 1Mb (chr12:104818776:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000111696 NT5DC3 977542 sc-eQTL 9.58e-01 0.00984 0.187 0.054 B_Activated L2
ENSG00000111727 HCFC2 754245 sc-eQTL 9.02e-01 -0.0254 0.206 0.054 B_Activated L2
ENSG00000120837 NFYB 680535 sc-eQTL 8.22e-01 -0.0501 0.222 0.054 B_Activated L2
ENSG00000136044 APPL2 -417427 sc-eQTL 5.31e-01 -0.135 0.215 0.054 B_Activated L2
ENSG00000136051 WASHC4 -288548 sc-eQTL 6.79e-01 -0.0849 0.205 0.054 B_Activated L2
ENSG00000136052 SLC41A2 -139968 sc-eQTL 9.98e-01 -0.000352 0.153 0.054 B_Activated L2
ENSG00000139372 TDG 852954 sc-eQTL 9.28e-01 -0.0201 0.222 0.054 B_Activated L2
ENSG00000151131 C12orf45 -167540 sc-eQTL 9.49e-01 -0.0138 0.213 0.054 B_Activated L2
ENSG00000166598 HSP90B1 888669 sc-eQTL 5.76e-01 0.134 0.239 0.054 B_Activated L2
ENSG00000171310 CHST11 363481 sc-eQTL 2.86e-01 0.221 0.206 0.054 B_Activated L2
ENSG00000198431 TXNRD1 602997 sc-eQTL 3.30e-01 -0.214 0.218 0.054 B_Activated L2
ENSG00000204954 C12orf73 853068 sc-eQTL 4.98e-01 0.136 0.2 0.054 B_Activated L2
ENSG00000235162 C12orf75 -416514 sc-eQTL 2.57e-01 -0.234 0.206 0.054 B_Activated L2
ENSG00000255150 EID3 515037 sc-eQTL 4.59e-01 -0.153 0.206 0.054 B_Activated L2
ENSG00000111727 HCFC2 754245 sc-eQTL 4.58e-01 0.161 0.216 0.05 NK_HLA L2
ENSG00000120837 NFYB 680535 sc-eQTL 2.78e-01 -0.239 0.219 0.05 NK_HLA L2
ENSG00000136044 APPL2 -417427 sc-eQTL 9.62e-01 0.00972 0.204 0.05 NK_HLA L2
ENSG00000136051 WASHC4 -288548 sc-eQTL 6.39e-02 0.39 0.209 0.05 NK_HLA L2
ENSG00000139372 TDG 852954 sc-eQTL 9.53e-01 -0.0127 0.217 0.05 NK_HLA L2
ENSG00000151131 C12orf45 -167540 sc-eQTL 6.55e-01 -0.0949 0.212 0.05 NK_HLA L2
ENSG00000166598 HSP90B1 888669 sc-eQTL 3.37e-01 -0.205 0.213 0.05 NK_HLA L2
ENSG00000171310 CHST11 363481 sc-eQTL 8.05e-01 -0.0459 0.186 0.05 NK_HLA L2
ENSG00000198431 TXNRD1 602997 sc-eQTL 3.56e-01 -0.21 0.228 0.05 NK_HLA L2
ENSG00000204954 C12orf73 853068 sc-eQTL 5.46e-01 -0.119 0.197 0.05 NK_HLA L2
ENSG00000235162 C12orf75 -416514 sc-eQTL 5.78e-01 0.0852 0.153 0.05 NK_HLA L2
ENSG00000255150 EID3 515037 sc-eQTL 5.64e-02 -0.392 0.204 0.05 NK_HLA L2
ENSG00000111696 NT5DC3 977542 sc-eQTL 7.88e-01 0.0632 0.235 0.051 cDC L2
ENSG00000111727 HCFC2 754245 sc-eQTL 9.54e-01 0.0118 0.205 0.051 cDC L2
ENSG00000120837 NFYB 680535 sc-eQTL 3.82e-01 -0.192 0.219 0.051 cDC L2
ENSG00000136044 APPL2 -417427 sc-eQTL 5.50e-01 -0.128 0.213 0.051 cDC L2
ENSG00000136051 WASHC4 -288548 sc-eQTL 4.07e-01 -0.158 0.19 0.051 cDC L2
ENSG00000136052 SLC41A2 -139968 sc-eQTL 4.17e-01 0.135 0.166 0.051 cDC L2
ENSG00000139372 TDG 852954 sc-eQTL 7.22e-01 -0.0806 0.226 0.051 cDC L2
ENSG00000151131 C12orf45 -167540 sc-eQTL 4.61e-01 -0.109 0.147 0.051 cDC L2
ENSG00000166598 HSP90B1 888669 sc-eQTL 6.20e-01 -0.0993 0.2 0.051 cDC L2
ENSG00000171310 CHST11 363481 sc-eQTL 6.74e-01 -0.0831 0.197 0.051 cDC L2
ENSG00000198431 TXNRD1 602997 sc-eQTL 8.87e-02 -0.355 0.208 0.051 cDC L2
ENSG00000204954 C12orf73 853068 sc-eQTL 5.51e-02 0.398 0.206 0.051 cDC L2
ENSG00000235162 C12orf75 -416514 sc-eQTL 8.63e-01 0.0275 0.16 0.051 cDC L2
ENSG00000255150 EID3 515037 sc-eQTL 3.78e-01 0.171 0.193 0.051 cDC L2
ENSG00000111696 NT5DC3 977542 sc-eQTL 6.22e-01 -0.0949 0.192 0.051 pDC L2
ENSG00000111727 HCFC2 754245 sc-eQTL 1.02e-01 -0.355 0.216 0.051 pDC L2
ENSG00000120837 NFYB 680535 sc-eQTL 3.57e-02 -0.475 0.224 0.051 pDC L2
ENSG00000136044 APPL2 -417427 sc-eQTL 2.49e-01 -0.244 0.211 0.051 pDC L2
ENSG00000136051 WASHC4 -288548 sc-eQTL 7.91e-02 0.352 0.199 0.051 pDC L2
ENSG00000136052 SLC41A2 -139968 sc-eQTL 4.46e-01 0.12 0.157 0.051 pDC L2
ENSG00000139372 TDG 852954 sc-eQTL 1.65e-01 0.269 0.192 0.051 pDC L2
ENSG00000151131 C12orf45 -167540 sc-eQTL 2.39e-02 0.307 0.134 0.051 pDC L2
ENSG00000166598 HSP90B1 888669 sc-eQTL 6.42e-01 -0.0704 0.151 0.051 pDC L2
ENSG00000171310 CHST11 363481 sc-eQTL 9.50e-01 -0.0121 0.194 0.051 pDC L2
ENSG00000198431 TXNRD1 602997 sc-eQTL 2.16e-01 -0.263 0.212 0.051 pDC L2
ENSG00000204954 C12orf73 853068 sc-eQTL 2.55e-02 -0.418 0.185 0.051 pDC L2
ENSG00000235162 C12orf75 -416514 sc-eQTL 5.08e-02 0.256 0.13 0.051 pDC L2
ENSG00000255150 EID3 515037 sc-eQTL 8.78e-01 -0.0268 0.174 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000136044 APPL2 -417427 pQTL 0.000346 0.0903 0.0252 0.0 0.0 0.0408
ENSG00000136044 APPL2 -417427 eQTL 0.0118 0.122 0.0485 0.0 0.0 0.0417
ENSG00000136052 SLC41A2 -139968 eQTL 0.000149 -0.352 0.0924 0.0 0.0 0.0417
ENSG00000171310 CHST11 363481 eQTL 0.00918 -0.0991 0.0379 0.0 0.0 0.0417

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000111727 \N 754245 3.62e-07 2.5e-07 7.16e-08 3.56e-07 1.08e-07 1.26e-07 3.11e-07 7.98e-08 2.04e-07 1.11e-07 2.47e-07 1.72e-07 2.74e-07 8.85e-08 7.98e-08 1.01e-07 9.3e-08 2.56e-07 1.13e-07 7.29e-08 1.68e-07 2.24e-07 1.89e-07 5.6e-08 2.74e-07 1.86e-07 1.48e-07 1.69e-07 1.36e-07 3.15e-07 1.76e-07 6.78e-08 6.08e-08 1.03e-07 1.01e-07 7.86e-08 1.1e-07 9.33e-08 5.86e-08 7.65e-08 4.83e-08 1.55e-07 2.47e-08 1.77e-08 7.26e-08 9.49e-09 7.66e-08 0.0 4.74e-08
ENSG00000136052 SLC41A2 -139968 5.75e-06 9.44e-06 1.24e-06 5.05e-06 2.21e-06 3.11e-06 9.07e-06 1.92e-06 7.68e-06 4.26e-06 1.02e-05 4.59e-06 1.13e-05 3.86e-06 2.19e-06 5.6e-06 3.84e-06 3.79e-06 2.61e-06 2.69e-06 4.99e-06 8.11e-06 6.46e-06 3.21e-06 9.99e-06 2.66e-06 4.34e-06 3.6e-06 6.77e-06 7.65e-06 4.4e-06 9.58e-07 1.33e-06 2.53e-06 2.69e-06 2.19e-06 1.74e-06 1.86e-06 1.61e-06 8.68e-07 8.54e-07 8.29e-06 1.38e-06 1.59e-07 6.94e-07 1.32e-06 1.24e-06 6.99e-07 4.03e-07
ENSG00000171310 CHST11 363481 1.29e-06 1.4e-06 2.79e-07 1.35e-06 4.41e-07 6.36e-07 1.48e-06 3.77e-07 1.7e-06 6.05e-07 2.08e-06 8.93e-07 2.41e-06 3.95e-07 4.48e-07 9.54e-07 1.02e-06 8.55e-07 5.81e-07 5.11e-07 6.35e-07 1.98e-06 1.05e-06 6.51e-07 2.25e-06 7.37e-07 1.06e-06 9.87e-07 1.31e-06 1.4e-06 8.13e-07 2.31e-07 3.97e-07 6.86e-07 5.76e-07 6.3e-07 7.29e-07 4.38e-07 4.82e-07 3.15e-07 2.88e-07 1.56e-06 5e-07 9.66e-08 2.74e-07 3.02e-07 2.39e-07 1.43e-07 2.76e-07