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Genes within 1Mb (chr12:104469639:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000111696 NT5DC3 628405 sc-eQTL 4.16e-01 0.164 0.201 0.052 DC L1
ENSG00000111727 HCFC2 405108 sc-eQTL 8.24e-01 0.0482 0.216 0.052 DC L1
ENSG00000120837 NFYB 331398 sc-eQTL 1.68e-02 0.46 0.191 0.052 DC L1
ENSG00000136044 APPL2 -766564 sc-eQTL 8.65e-01 -0.0335 0.197 0.052 DC L1
ENSG00000136051 WASHC4 -637685 sc-eQTL 4.59e-01 0.118 0.159 0.052 DC L1
ENSG00000136052 SLC41A2 -489105 sc-eQTL 4.19e-01 -0.109 0.135 0.052 DC L1
ENSG00000139372 TDG 503817 sc-eQTL 8.55e-01 -0.0361 0.198 0.052 DC L1
ENSG00000151131 C12orf45 -516677 sc-eQTL 9.49e-01 -0.00777 0.121 0.052 DC L1
ENSG00000166598 HSP90B1 539532 sc-eQTL 2.31e-02 0.294 0.128 0.052 DC L1
ENSG00000171310 CHST11 14344 sc-eQTL 8.85e-02 0.287 0.167 0.052 DC L1
ENSG00000179088 C12orf42 973629 sc-eQTL 1.29e-01 0.258 0.169 0.052 DC L1
ENSG00000198431 TXNRD1 253860 sc-eQTL 7.62e-01 0.0565 0.186 0.052 DC L1
ENSG00000204954 C12orf73 503931 sc-eQTL 8.35e-01 -0.0426 0.205 0.052 DC L1
ENSG00000235162 C12orf75 -765651 sc-eQTL 5.70e-01 -0.0459 0.0808 0.052 DC L1
ENSG00000255150 EID3 165900 sc-eQTL 6.26e-01 0.0931 0.191 0.052 DC L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000111727 HCFC2 405108 sc-eQTL 6.29e-01 -0.105 0.217 0.05 NK_HLA L2
ENSG00000120837 NFYB 331398 sc-eQTL 7.28e-02 0.395 0.219 0.05 NK_HLA L2
ENSG00000136044 APPL2 -766564 sc-eQTL 2.88e-01 0.218 0.204 0.05 NK_HLA L2
ENSG00000136051 WASHC4 -637685 sc-eQTL 4.33e-01 -0.166 0.211 0.05 NK_HLA L2
ENSG00000139372 TDG 503817 sc-eQTL 2.85e-01 0.233 0.217 0.05 NK_HLA L2
ENSG00000151131 C12orf45 -516677 sc-eQTL 6.05e-01 -0.11 0.213 0.05 NK_HLA L2
ENSG00000166598 HSP90B1 539532 sc-eQTL 5.59e-01 -0.125 0.214 0.05 NK_HLA L2
ENSG00000171310 CHST11 14344 sc-eQTL 2.23e-01 -0.228 0.186 0.05 NK_HLA L2
ENSG00000198431 TXNRD1 253860 sc-eQTL 1.74e-01 0.31 0.227 0.05 NK_HLA L2
ENSG00000204954 C12orf73 503931 sc-eQTL 3.85e-02 -0.408 0.196 0.05 NK_HLA L2
ENSG00000235162 C12orf75 -765651 sc-eQTL 8.66e-01 0.0259 0.153 0.05 NK_HLA L2
ENSG00000255150 EID3 165900 sc-eQTL 4.32e-02 0.416 0.204 0.05 NK_HLA L2
ENSG00000111696 NT5DC3 628405 sc-eQTL 2.84e-01 -0.248 0.23 0.056 PB L2
ENSG00000111727 HCFC2 405108 sc-eQTL 2.15e-01 -0.245 0.197 0.056 PB L2
ENSG00000120837 NFYB 331398 sc-eQTL 2.27e-01 -0.278 0.229 0.056 PB L2
ENSG00000136044 APPL2 -766564 sc-eQTL 4.74e-01 0.179 0.249 0.056 PB L2
ENSG00000136051 WASHC4 -637685 sc-eQTL 4.45e-01 -0.163 0.212 0.056 PB L2
ENSG00000136052 SLC41A2 -489105 sc-eQTL 3.53e-01 -0.211 0.226 0.056 PB L2
ENSG00000139372 TDG 503817 sc-eQTL 1.58e-01 -0.331 0.233 0.056 PB L2
ENSG00000151131 C12orf45 -516677 sc-eQTL 6.19e-01 -0.111 0.223 0.056 PB L2
ENSG00000166598 HSP90B1 539532 sc-eQTL 5.87e-01 0.0589 0.108 0.056 PB L2
ENSG00000171310 CHST11 14344 sc-eQTL 4.88e-01 -0.14 0.201 0.056 PB L2
ENSG00000179088 C12orf42 973629 sc-eQTL 1.90e-01 0.248 0.188 0.056 PB L2
ENSG00000198431 TXNRD1 253860 sc-eQTL 5.12e-01 0.133 0.202 0.056 PB L2
ENSG00000204954 C12orf73 503931 sc-eQTL 8.06e-02 0.411 0.233 0.056 PB L2
ENSG00000235162 C12orf75 -765651 sc-eQTL 3.86e-01 0.136 0.156 0.056 PB L2
ENSG00000255150 EID3 165900 sc-eQTL 5.42e-01 -0.149 0.244 0.056 PB L2
ENSG00000111696 NT5DC3 628405 sc-eQTL 9.90e-01 0.00276 0.224 0.051 cDC L2
ENSG00000111727 HCFC2 405108 sc-eQTL 3.72e-01 0.175 0.196 0.051 cDC L2
ENSG00000120837 NFYB 331398 sc-eQTL 8.00e-01 0.0533 0.21 0.051 cDC L2
ENSG00000136044 APPL2 -766564 sc-eQTL 8.03e-01 -0.051 0.204 0.051 cDC L2
ENSG00000136051 WASHC4 -637685 sc-eQTL 3.71e-01 0.163 0.181 0.051 cDC L2
ENSG00000136052 SLC41A2 -489105 sc-eQTL 9.96e-01 -0.000864 0.159 0.051 cDC L2
ENSG00000139372 TDG 503817 sc-eQTL 8.72e-01 -0.0348 0.216 0.051 cDC L2
ENSG00000151131 C12orf45 -516677 sc-eQTL 3.60e-01 0.129 0.141 0.051 cDC L2
ENSG00000166598 HSP90B1 539532 sc-eQTL 8.03e-01 0.0477 0.191 0.051 cDC L2
ENSG00000171310 CHST11 14344 sc-eQTL 2.38e-01 0.223 0.188 0.051 cDC L2
ENSG00000179088 C12orf42 973629 sc-eQTL 1.59e-01 0.201 0.142 0.051 cDC L2
ENSG00000198431 TXNRD1 253860 sc-eQTL 8.59e-01 0.0356 0.2 0.051 cDC L2
ENSG00000204954 C12orf73 503931 sc-eQTL 2.60e-01 -0.224 0.199 0.051 cDC L2
ENSG00000235162 C12orf75 -765651 sc-eQTL 6.32e-02 -0.283 0.151 0.051 cDC L2
ENSG00000255150 EID3 165900 sc-eQTL 9.31e-01 -0.016 0.185 0.051 cDC L2
ENSG00000111696 NT5DC3 628405 sc-eQTL 2.18e-01 0.292 0.236 0.052 gdT L2
ENSG00000111727 HCFC2 405108 sc-eQTL 6.77e-01 -0.102 0.245 0.052 gdT L2
ENSG00000120837 NFYB 331398 sc-eQTL 4.03e-01 -0.196 0.234 0.052 gdT L2
ENSG00000136044 APPL2 -766564 sc-eQTL 7.39e-01 0.0761 0.228 0.052 gdT L2
ENSG00000136051 WASHC4 -637685 sc-eQTL 9.06e-01 -0.0317 0.269 0.052 gdT L2
ENSG00000139372 TDG 503817 sc-eQTL 4.88e-01 -0.164 0.236 0.052 gdT L2
ENSG00000151131 C12orf45 -516677 sc-eQTL 6.97e-01 -0.104 0.267 0.052 gdT L2
ENSG00000166598 HSP90B1 539532 sc-eQTL 2.10e-01 -0.313 0.248 0.052 gdT L2
ENSG00000171310 CHST11 14344 sc-eQTL 1.54e-01 -0.315 0.22 0.052 gdT L2
ENSG00000179088 C12orf42 973629 sc-eQTL 7.39e-01 0.078 0.234 0.052 gdT L2
ENSG00000198431 TXNRD1 253860 sc-eQTL 7.91e-01 0.0695 0.262 0.052 gdT L2
ENSG00000204954 C12orf73 503931 sc-eQTL 8.05e-01 0.059 0.238 0.052 gdT L2
ENSG00000235162 C12orf75 -765651 sc-eQTL 1.31e-01 -0.319 0.21 0.052 gdT L2
ENSG00000255150 EID3 165900 sc-eQTL 9.07e-01 0.0304 0.26 0.052 gdT L2
ENSG00000111696 NT5DC3 628405 sc-eQTL 5.64e-01 0.112 0.194 0.051 intMono L2
ENSG00000111727 HCFC2 405108 sc-eQTL 1.96e-01 -0.265 0.204 0.051 intMono L2
ENSG00000120837 NFYB 331398 sc-eQTL 2.57e-01 -0.243 0.214 0.051 intMono L2
ENSG00000136044 APPL2 -766564 sc-eQTL 8.52e-01 0.0388 0.208 0.051 intMono L2
ENSG00000136051 WASHC4 -637685 sc-eQTL 8.94e-01 -0.0233 0.176 0.051 intMono L2
ENSG00000139372 TDG 503817 sc-eQTL 8.77e-01 -0.031 0.2 0.051 intMono L2
ENSG00000151131 C12orf45 -516677 sc-eQTL 2.51e-01 0.244 0.212 0.051 intMono L2
ENSG00000166598 HSP90B1 539532 sc-eQTL 5.62e-01 0.104 0.179 0.051 intMono L2
ENSG00000171310 CHST11 14344 sc-eQTL 5.20e-01 0.124 0.192 0.051 intMono L2
ENSG00000198431 TXNRD1 253860 sc-eQTL 3.09e-01 -0.21 0.206 0.051 intMono L2
ENSG00000204954 C12orf73 503931 sc-eQTL 7.46e-01 0.0596 0.183 0.051 intMono L2
ENSG00000235162 C12orf75 -765651 sc-eQTL 4.58e-02 0.365 0.182 0.051 intMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000139372 TDG 503817 eQTL 0.0249 -0.0889 0.0396 0.0 0.0 0.0491
ENSG00000166598 HSP90B1 539532 eQTL 0.0478 0.0704 0.0355 0.0 0.0 0.0491
ENSG00000171310 CHST11 14344 eQTL 0.00013 -0.127 0.0331 0.0 0.0 0.0491

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000171310 CHST11 14344 8.07e-05 2.26e-05 3.08e-06 1.29e-05 3.6e-06 1.82e-05 3.18e-05 3.48e-06 2.01e-05 1.17e-05 2.42e-05 9.52e-06 3.63e-05 9.05e-06 6.11e-06 1.42e-05 1.4e-05 2.99e-05 5.99e-06 4.69e-06 1.21e-05 2.42e-05 2.67e-05 7.31e-06 3.68e-05 6.4e-06 9.55e-06 9e-06 2.05e-05 2.17e-05 1.27e-05 1.26e-06 1.67e-06 5.42e-06 8.98e-06 3.74e-06 1.84e-06 2.25e-06 3.56e-06 2.42e-06 1.52e-06 3.36e-05 4.94e-06 1.35e-07 2.21e-06 2.6e-06 3.4e-06 8.94e-07 7.39e-07