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Genes within 1Mb (chr12:104459695:CT:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000111696 NT5DC3 618461 sc-eQTL 2.15e-01 -0.242 0.194 0.052 DC L1
ENSG00000111727 HCFC2 395164 sc-eQTL 7.11e-01 -0.0774 0.209 0.052 DC L1
ENSG00000120837 NFYB 321454 sc-eQTL 2.50e-01 -0.216 0.187 0.052 DC L1
ENSG00000136044 APPL2 -776508 sc-eQTL 4.15e-01 -0.156 0.191 0.052 DC L1
ENSG00000136051 WASHC4 -647629 sc-eQTL 3.18e-01 -0.154 0.154 0.052 DC L1
ENSG00000136052 SLC41A2 -499049 sc-eQTL 3.91e-01 0.112 0.13 0.052 DC L1
ENSG00000139372 TDG 493873 sc-eQTL 1.51e-01 0.275 0.191 0.052 DC L1
ENSG00000151131 C12orf45 -526621 sc-eQTL 8.87e-01 -0.0166 0.117 0.052 DC L1
ENSG00000166598 HSP90B1 529588 sc-eQTL 1.23e-01 0.194 0.125 0.052 DC L1
ENSG00000171310 CHST11 4400 sc-eQTL 7.21e-01 0.0585 0.163 0.052 DC L1
ENSG00000179088 C12orf42 963685 sc-eQTL 6.92e-01 0.0653 0.165 0.052 DC L1
ENSG00000198431 TXNRD1 243916 sc-eQTL 9.66e-01 0.00779 0.18 0.052 DC L1
ENSG00000204954 C12orf73 493987 sc-eQTL 4.24e-01 -0.158 0.198 0.052 DC L1
ENSG00000235162 C12orf75 -775595 sc-eQTL 8.65e-01 0.0134 0.0783 0.052 DC L1
ENSG00000255150 EID3 155956 sc-eQTL 2.76e-01 -0.201 0.184 0.052 DC L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000111696 NT5DC3 618461 sc-eQTL 4.85e-01 0.132 0.188 0.054 B_Activated L2
ENSG00000111727 HCFC2 395164 sc-eQTL 9.06e-02 0.35 0.206 0.054 B_Activated L2
ENSG00000120837 NFYB 321454 sc-eQTL 3.07e-01 -0.229 0.223 0.054 B_Activated L2
ENSG00000136044 APPL2 -776508 sc-eQTL 4.04e-01 -0.182 0.217 0.054 B_Activated L2
ENSG00000136051 WASHC4 -647629 sc-eQTL 2.01e-02 0.478 0.203 0.054 B_Activated L2
ENSG00000136052 SLC41A2 -499049 sc-eQTL 5.75e-01 0.0867 0.154 0.054 B_Activated L2
ENSG00000139372 TDG 493873 sc-eQTL 5.27e-01 -0.141 0.223 0.054 B_Activated L2
ENSG00000151131 C12orf45 -526621 sc-eQTL 6.79e-01 0.089 0.214 0.054 B_Activated L2
ENSG00000166598 HSP90B1 529588 sc-eQTL 4.81e-01 0.17 0.241 0.054 B_Activated L2
ENSG00000171310 CHST11 4400 sc-eQTL 8.11e-01 -0.05 0.209 0.054 B_Activated L2
ENSG00000179088 C12orf42 963685 sc-eQTL 6.51e-01 -0.0834 0.184 0.054 B_Activated L2
ENSG00000198431 TXNRD1 243916 sc-eQTL 2.27e-01 0.266 0.22 0.054 B_Activated L2
ENSG00000204954 C12orf73 493987 sc-eQTL 5.05e-01 0.135 0.202 0.054 B_Activated L2
ENSG00000235162 C12orf75 -775595 sc-eQTL 2.67e-01 0.231 0.208 0.054 B_Activated L2
ENSG00000255150 EID3 155956 sc-eQTL 2.73e-02 -0.457 0.205 0.054 B_Activated L2
ENSG00000111696 NT5DC3 618461 sc-eQTL 2.98e-01 -0.187 0.18 0.052 CD4_CTL L2
ENSG00000111727 HCFC2 395164 sc-eQTL 4.84e-01 0.143 0.204 0.052 CD4_CTL L2
ENSG00000120837 NFYB 321454 sc-eQTL 2.91e-01 -0.215 0.203 0.052 CD4_CTL L2
ENSG00000136044 APPL2 -776508 sc-eQTL 6.45e-01 0.0924 0.2 0.052 CD4_CTL L2
ENSG00000136051 WASHC4 -647629 sc-eQTL 2.09e-01 -0.241 0.192 0.052 CD4_CTL L2
ENSG00000139372 TDG 493873 sc-eQTL 2.07e-01 -0.27 0.213 0.052 CD4_CTL L2
ENSG00000151131 C12orf45 -526621 sc-eQTL 5.58e-01 -0.113 0.193 0.052 CD4_CTL L2
ENSG00000166598 HSP90B1 529588 sc-eQTL 8.12e-01 -0.0433 0.181 0.052 CD4_CTL L2
ENSG00000171310 CHST11 4400 sc-eQTL 7.39e-01 0.0577 0.173 0.052 CD4_CTL L2
ENSG00000179088 C12orf42 963685 sc-eQTL 6.52e-01 -0.0837 0.186 0.052 CD4_CTL L2
ENSG00000198431 TXNRD1 243916 sc-eQTL 5.44e-01 0.126 0.207 0.052 CD4_CTL L2
ENSG00000204954 C12orf73 493987 sc-eQTL 2.88e-01 -0.213 0.2 0.052 CD4_CTL L2
ENSG00000235162 C12orf75 -775595 sc-eQTL 4.54e-01 -0.0874 0.117 0.052 CD4_CTL L2
ENSG00000255150 EID3 155956 sc-eQTL 8.18e-01 -0.0476 0.206 0.052 CD4_CTL L2
ENSG00000111696 NT5DC3 618461 sc-eQTL 4.14e-01 -0.151 0.184 0.053 CD8_TCM L2
ENSG00000111727 HCFC2 395164 sc-eQTL 5.10e-02 -0.399 0.203 0.053 CD8_TCM L2
ENSG00000120837 NFYB 321454 sc-eQTL 8.62e-01 0.0361 0.207 0.053 CD8_TCM L2
ENSG00000136044 APPL2 -776508 sc-eQTL 8.98e-01 -0.0262 0.204 0.053 CD8_TCM L2
ENSG00000136051 WASHC4 -647629 sc-eQTL 1.40e-01 0.304 0.205 0.053 CD8_TCM L2
ENSG00000139372 TDG 493873 sc-eQTL 3.15e-01 0.205 0.203 0.053 CD8_TCM L2
ENSG00000151131 C12orf45 -526621 sc-eQTL 6.69e-01 -0.094 0.219 0.053 CD8_TCM L2
ENSG00000166598 HSP90B1 529588 sc-eQTL 7.44e-01 0.0633 0.194 0.053 CD8_TCM L2
ENSG00000171310 CHST11 4400 sc-eQTL 6.66e-01 0.062 0.143 0.053 CD8_TCM L2
ENSG00000179088 C12orf42 963685 sc-eQTL 6.55e-01 0.085 0.19 0.053 CD8_TCM L2
ENSG00000198431 TXNRD1 243916 sc-eQTL 9.76e-01 0.00648 0.212 0.053 CD8_TCM L2
ENSG00000204954 C12orf73 493987 sc-eQTL 8.95e-01 0.0279 0.211 0.053 CD8_TCM L2
ENSG00000235162 C12orf75 -775595 sc-eQTL 5.55e-01 0.115 0.194 0.053 CD8_TCM L2
ENSG00000255150 EID3 155956 sc-eQTL 5.25e-01 0.133 0.208 0.053 CD8_TCM L2
ENSG00000111696 NT5DC3 618461 sc-eQTL 2.98e-01 -0.2 0.192 0.053 CD8_TEM L2
ENSG00000111727 HCFC2 395164 sc-eQTL 1.43e-01 -0.307 0.208 0.053 CD8_TEM L2
ENSG00000120837 NFYB 321454 sc-eQTL 2.68e-02 0.441 0.197 0.053 CD8_TEM L2
ENSG00000136044 APPL2 -776508 sc-eQTL 2.76e-01 -0.233 0.214 0.053 CD8_TEM L2
ENSG00000136051 WASHC4 -647629 sc-eQTL 5.21e-02 0.429 0.22 0.053 CD8_TEM L2
ENSG00000139372 TDG 493873 sc-eQTL 8.33e-01 0.0453 0.214 0.053 CD8_TEM L2
ENSG00000151131 C12orf45 -526621 sc-eQTL 6.19e-02 -0.403 0.214 0.053 CD8_TEM L2
ENSG00000166598 HSP90B1 529588 sc-eQTL 5.25e-01 -0.127 0.199 0.053 CD8_TEM L2
ENSG00000171310 CHST11 4400 sc-eQTL 6.55e-01 -0.0944 0.211 0.053 CD8_TEM L2
ENSG00000179088 C12orf42 963685 sc-eQTL 1.34e-01 0.3 0.199 0.053 CD8_TEM L2
ENSG00000198431 TXNRD1 243916 sc-eQTL 7.62e-01 -0.064 0.211 0.053 CD8_TEM L2
ENSG00000204954 C12orf73 493987 sc-eQTL 6.79e-01 0.0851 0.205 0.053 CD8_TEM L2
ENSG00000235162 C12orf75 -775595 sc-eQTL 8.03e-01 0.0413 0.165 0.053 CD8_TEM L2
ENSG00000255150 EID3 155956 sc-eQTL 2.22e-02 -0.483 0.209 0.053 CD8_TEM L2
ENSG00000111727 HCFC2 395164 sc-eQTL 2.89e-02 -0.467 0.212 0.05 NK_HLA L2
ENSG00000120837 NFYB 321454 sc-eQTL 2.01e-01 -0.279 0.217 0.05 NK_HLA L2
ENSG00000136044 APPL2 -776508 sc-eQTL 3.43e-01 0.192 0.202 0.05 NK_HLA L2
ENSG00000136051 WASHC4 -647629 sc-eQTL 5.53e-02 0.4 0.207 0.05 NK_HLA L2
ENSG00000139372 TDG 493873 sc-eQTL 5.05e-01 -0.143 0.215 0.05 NK_HLA L2
ENSG00000151131 C12orf45 -526621 sc-eQTL 7.51e-01 0.0671 0.211 0.05 NK_HLA L2
ENSG00000166598 HSP90B1 529588 sc-eQTL 6.61e-01 0.0928 0.211 0.05 NK_HLA L2
ENSG00000171310 CHST11 4400 sc-eQTL 6.46e-01 -0.085 0.185 0.05 NK_HLA L2
ENSG00000198431 TXNRD1 243916 sc-eQTL 9.08e-01 -0.0261 0.226 0.05 NK_HLA L2
ENSG00000204954 C12orf73 493987 sc-eQTL 1.59e-01 -0.275 0.195 0.05 NK_HLA L2
ENSG00000235162 C12orf75 -775595 sc-eQTL 5.62e-01 0.0878 0.151 0.05 NK_HLA L2
ENSG00000255150 EID3 155956 sc-eQTL 7.82e-01 0.0566 0.204 0.05 NK_HLA L2
ENSG00000111696 NT5DC3 618461 sc-eQTL 7.39e-01 0.0601 0.18 0.05 Pro_T L2
ENSG00000111727 HCFC2 395164 sc-eQTL 8.55e-01 0.0359 0.196 0.05 Pro_T L2
ENSG00000120837 NFYB 321454 sc-eQTL 9.84e-01 -0.00414 0.202 0.05 Pro_T L2
ENSG00000136044 APPL2 -776508 sc-eQTL 4.78e-01 -0.14 0.197 0.05 Pro_T L2
ENSG00000136051 WASHC4 -647629 sc-eQTL 5.13e-01 -0.144 0.22 0.05 Pro_T L2
ENSG00000139372 TDG 493873 sc-eQTL 2.40e-01 0.225 0.191 0.05 Pro_T L2
ENSG00000151131 C12orf45 -526621 sc-eQTL 2.22e-01 0.205 0.167 0.05 Pro_T L2
ENSG00000166598 HSP90B1 529588 sc-eQTL 5.81e-01 -0.0741 0.134 0.05 Pro_T L2
ENSG00000171310 CHST11 4400 sc-eQTL 8.21e-01 0.0429 0.19 0.05 Pro_T L2
ENSG00000179088 C12orf42 963685 sc-eQTL 4.00e-01 0.155 0.184 0.05 Pro_T L2
ENSG00000198431 TXNRD1 243916 sc-eQTL 1.70e-01 -0.224 0.162 0.05 Pro_T L2
ENSG00000204954 C12orf73 493987 sc-eQTL 8.31e-01 -0.0405 0.189 0.05 Pro_T L2
ENSG00000235162 C12orf75 -775595 sc-eQTL 8.51e-01 0.0264 0.14 0.05 Pro_T L2
ENSG00000255150 EID3 155956 sc-eQTL 1.49e-01 0.306 0.211 0.05 Pro_T L2
ENSG00000111696 NT5DC3 618461 sc-eQTL 3.24e-01 0.204 0.206 0.064 gdT L2
ENSG00000111727 HCFC2 395164 sc-eQTL 7.20e-01 -0.0767 0.214 0.064 gdT L2
ENSG00000120837 NFYB 321454 sc-eQTL 5.87e-02 0.385 0.202 0.064 gdT L2
ENSG00000136044 APPL2 -776508 sc-eQTL 5.83e-01 0.109 0.198 0.064 gdT L2
ENSG00000136051 WASHC4 -647629 sc-eQTL 4.19e-01 -0.189 0.234 0.064 gdT L2
ENSG00000139372 TDG 493873 sc-eQTL 8.89e-01 -0.0289 0.206 0.064 gdT L2
ENSG00000151131 C12orf45 -526621 sc-eQTL 7.83e-01 -0.0643 0.233 0.064 gdT L2
ENSG00000166598 HSP90B1 529588 sc-eQTL 3.19e-01 0.217 0.217 0.064 gdT L2
ENSG00000171310 CHST11 4400 sc-eQTL 5.54e-01 -0.114 0.193 0.064 gdT L2
ENSG00000179088 C12orf42 963685 sc-eQTL 9.25e-02 -0.342 0.202 0.064 gdT L2
ENSG00000198431 TXNRD1 243916 sc-eQTL 1.60e-01 -0.32 0.227 0.064 gdT L2
ENSG00000204954 C12orf73 493987 sc-eQTL 3.75e-01 0.184 0.207 0.064 gdT L2
ENSG00000235162 C12orf75 -775595 sc-eQTL 1.92e-01 -0.241 0.184 0.064 gdT L2
ENSG00000255150 EID3 155956 sc-eQTL 9.45e-02 -0.377 0.224 0.064 gdT L2
ENSG00000111696 NT5DC3 618461 sc-eQTL 7.46e-01 -0.0624 0.192 0.051 intMono L2
ENSG00000111727 HCFC2 395164 sc-eQTL 2.66e-01 -0.227 0.203 0.051 intMono L2
ENSG00000120837 NFYB 321454 sc-eQTL 9.99e-01 0.000203 0.213 0.051 intMono L2
ENSG00000136044 APPL2 -776508 sc-eQTL 3.43e-01 0.196 0.206 0.051 intMono L2
ENSG00000136051 WASHC4 -647629 sc-eQTL 4.06e-01 -0.145 0.174 0.051 intMono L2
ENSG00000139372 TDG 493873 sc-eQTL 5.52e-01 0.118 0.199 0.051 intMono L2
ENSG00000151131 C12orf45 -526621 sc-eQTL 7.38e-01 0.0706 0.211 0.051 intMono L2
ENSG00000166598 HSP90B1 529588 sc-eQTL 4.46e-01 0.135 0.177 0.051 intMono L2
ENSG00000171310 CHST11 4400 sc-eQTL 1.52e-02 -0.46 0.188 0.051 intMono L2
ENSG00000198431 TXNRD1 243916 sc-eQTL 4.53e-01 -0.154 0.205 0.051 intMono L2
ENSG00000204954 C12orf73 493987 sc-eQTL 7.04e-01 -0.0693 0.182 0.051 intMono L2
ENSG00000235162 C12orf75 -775595 sc-eQTL 2.37e-01 0.215 0.182 0.051 intMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000213442 \N 194386 7.03e-06 3.09e-06 1.04e-06 2.68e-06 3.86e-07 1.61e-06 2.49e-06 3.3e-07 1.7e-06 7.58e-07 2.05e-06 8.77e-07 3.39e-06 1.21e-06 8.91e-07 1.5e-06 1.46e-06 2.31e-06 5.78e-07 1.05e-06 7.78e-07 3.09e-06 3.17e-06 9.14e-07 3.88e-06 1.06e-06 1.31e-06 8.92e-07 2.15e-06 2.24e-06 8.46e-07 2.62e-07 2.8e-07 1.7e-06 1.45e-06 4.39e-07 7.27e-07 3.23e-07 1.21e-06 5.94e-07 5.21e-07 4.65e-06 3.65e-07 1.96e-07 5.79e-07 3.61e-07 8.41e-07 8.41e-08 1.04e-07