logo

Genes within 1Mb (chr12:104450457:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000111696 NT5DC3 609223 sc-eQTL 3.90e-01 0.145 0.168 0.054 B_Activated L2
ENSG00000111727 HCFC2 385926 sc-eQTL 6.85e-01 0.0754 0.185 0.054 B_Activated L2
ENSG00000120837 NFYB 312216 sc-eQTL 2.11e-01 -0.25 0.199 0.054 B_Activated L2
ENSG00000136044 APPL2 -785746 sc-eQTL 9.43e-01 0.014 0.195 0.054 B_Activated L2
ENSG00000136051 WASHC4 -656867 sc-eQTL 4.06e-01 0.154 0.185 0.054 B_Activated L2
ENSG00000136052 SLC41A2 -508287 sc-eQTL 5.74e-01 -0.0777 0.138 0.054 B_Activated L2
ENSG00000139372 TDG 484635 sc-eQTL 3.92e-01 0.171 0.2 0.054 B_Activated L2
ENSG00000151131 C12orf45 -535859 sc-eQTL 8.25e-01 0.0424 0.192 0.054 B_Activated L2
ENSG00000166598 HSP90B1 520350 sc-eQTL 3.86e-01 0.187 0.216 0.054 B_Activated L2
ENSG00000171310 CHST11 -4838 sc-eQTL 9.67e-01 0.00763 0.187 0.054 B_Activated L2
ENSG00000179088 C12orf42 954447 sc-eQTL 8.84e-01 0.0241 0.165 0.054 B_Activated L2
ENSG00000198431 TXNRD1 234678 sc-eQTL 5.16e-01 0.128 0.197 0.054 B_Activated L2
ENSG00000204954 C12orf73 484749 sc-eQTL 4.56e-01 -0.135 0.181 0.054 B_Activated L2
ENSG00000235162 C12orf75 -784833 sc-eQTL 3.09e-01 0.19 0.186 0.054 B_Activated L2
ENSG00000255150 EID3 146718 sc-eQTL 3.16e-01 0.187 0.186 0.054 B_Activated L2
ENSG00000111696 NT5DC3 609223 sc-eQTL 1.49e-02 -0.396 0.161 0.052 CD4_CTL L2
ENSG00000111727 HCFC2 385926 sc-eQTL 5.19e-01 -0.12 0.186 0.052 CD4_CTL L2
ENSG00000120837 NFYB 312216 sc-eQTL 3.21e-01 0.184 0.185 0.052 CD4_CTL L2
ENSG00000136044 APPL2 -785746 sc-eQTL 9.89e-02 0.301 0.181 0.052 CD4_CTL L2
ENSG00000136051 WASHC4 -656867 sc-eQTL 3.90e-03 -0.501 0.171 0.052 CD4_CTL L2
ENSG00000139372 TDG 484635 sc-eQTL 9.75e-01 0.0062 0.195 0.052 CD4_CTL L2
ENSG00000151131 C12orf45 -535859 sc-eQTL 1.49e-02 0.427 0.174 0.052 CD4_CTL L2
ENSG00000166598 HSP90B1 520350 sc-eQTL 9.36e-01 -0.0134 0.165 0.052 CD4_CTL L2
ENSG00000171310 CHST11 -4838 sc-eQTL 9.15e-01 -0.0169 0.157 0.052 CD4_CTL L2
ENSG00000179088 C12orf42 954447 sc-eQTL 9.87e-01 -0.00266 0.169 0.052 CD4_CTL L2
ENSG00000198431 TXNRD1 234678 sc-eQTL 1.20e-01 -0.293 0.188 0.052 CD4_CTL L2
ENSG00000204954 C12orf73 484749 sc-eQTL 9.00e-01 0.023 0.183 0.052 CD4_CTL L2
ENSG00000235162 C12orf75 -784833 sc-eQTL 1.15e-01 -0.167 0.106 0.052 CD4_CTL L2
ENSG00000255150 EID3 146718 sc-eQTL 3.29e-01 0.184 0.187 0.052 CD4_CTL L2
ENSG00000111696 NT5DC3 609223 sc-eQTL 8.57e-01 0.031 0.172 0.053 CD8_TCM L2
ENSG00000111727 HCFC2 385926 sc-eQTL 1.21e-01 -0.296 0.19 0.053 CD8_TCM L2
ENSG00000120837 NFYB 312216 sc-eQTL 8.53e-01 -0.0357 0.193 0.053 CD8_TCM L2
ENSG00000136044 APPL2 -785746 sc-eQTL 2.44e-01 -0.222 0.19 0.053 CD8_TCM L2
ENSG00000136051 WASHC4 -656867 sc-eQTL 4.17e-01 0.156 0.192 0.053 CD8_TCM L2
ENSG00000139372 TDG 484635 sc-eQTL 2.28e-01 0.229 0.189 0.053 CD8_TCM L2
ENSG00000151131 C12orf45 -535859 sc-eQTL 1.09e-01 -0.327 0.203 0.053 CD8_TCM L2
ENSG00000166598 HSP90B1 520350 sc-eQTL 3.92e-01 0.155 0.18 0.053 CD8_TCM L2
ENSG00000171310 CHST11 -4838 sc-eQTL 8.56e-01 0.0243 0.134 0.053 CD8_TCM L2
ENSG00000179088 C12orf42 954447 sc-eQTL 2.64e-01 0.198 0.177 0.053 CD8_TCM L2
ENSG00000198431 TXNRD1 234678 sc-eQTL 3.59e-01 -0.182 0.198 0.053 CD8_TCM L2
ENSG00000204954 C12orf73 484749 sc-eQTL 2.98e-01 -0.204 0.196 0.053 CD8_TCM L2
ENSG00000235162 C12orf75 -784833 sc-eQTL 6.02e-01 0.0944 0.181 0.053 CD8_TCM L2
ENSG00000255150 EID3 146718 sc-eQTL 7.09e-01 -0.0725 0.194 0.053 CD8_TCM L2
ENSG00000111696 NT5DC3 609223 sc-eQTL 5.05e-01 -0.126 0.188 0.067 PB L2
ENSG00000111727 HCFC2 385926 sc-eQTL 1.49e-01 0.232 0.16 0.067 PB L2
ENSG00000120837 NFYB 312216 sc-eQTL 1.57e-01 0.265 0.186 0.067 PB L2
ENSG00000136044 APPL2 -785746 sc-eQTL 5.38e-01 -0.125 0.203 0.067 PB L2
ENSG00000136051 WASHC4 -656867 sc-eQTL 7.83e-01 -0.0479 0.173 0.067 PB L2
ENSG00000136052 SLC41A2 -508287 sc-eQTL 5.12e-01 0.121 0.184 0.067 PB L2
ENSG00000139372 TDG 484635 sc-eQTL 7.25e-02 -0.343 0.189 0.067 PB L2
ENSG00000151131 C12orf45 -535859 sc-eQTL 5.55e-01 0.108 0.182 0.067 PB L2
ENSG00000166598 HSP90B1 520350 sc-eQTL 9.71e-01 -0.0032 0.0882 0.067 PB L2
ENSG00000171310 CHST11 -4838 sc-eQTL 4.98e-02 0.32 0.161 0.067 PB L2
ENSG00000179088 C12orf42 954447 sc-eQTL 5.30e-01 -0.0972 0.154 0.067 PB L2
ENSG00000198431 TXNRD1 234678 sc-eQTL 9.59e-01 0.00848 0.165 0.067 PB L2
ENSG00000204954 C12orf73 484749 sc-eQTL 7.22e-01 -0.0687 0.192 0.067 PB L2
ENSG00000235162 C12orf75 -784833 sc-eQTL 9.92e-01 0.00121 0.128 0.067 PB L2
ENSG00000255150 EID3 146718 sc-eQTL 1.84e-01 0.264 0.198 0.067 PB L2
ENSG00000111696 NT5DC3 609223 sc-eQTL 5.15e-01 0.108 0.166 0.05 Pro_T L2
ENSG00000111727 HCFC2 385926 sc-eQTL 1.75e-02 0.427 0.178 0.05 Pro_T L2
ENSG00000120837 NFYB 312216 sc-eQTL 4.22e-01 0.15 0.187 0.05 Pro_T L2
ENSG00000136044 APPL2 -785746 sc-eQTL 2.55e-01 -0.208 0.182 0.05 Pro_T L2
ENSG00000136051 WASHC4 -656867 sc-eQTL 3.38e-02 -0.429 0.201 0.05 Pro_T L2
ENSG00000139372 TDG 484635 sc-eQTL 4.21e-01 0.143 0.177 0.05 Pro_T L2
ENSG00000151131 C12orf45 -535859 sc-eQTL 1.64e-03 0.484 0.152 0.05 Pro_T L2
ENSG00000166598 HSP90B1 520350 sc-eQTL 8.58e-01 -0.0222 0.124 0.05 Pro_T L2
ENSG00000171310 CHST11 -4838 sc-eQTL 9.39e-01 0.0136 0.176 0.05 Pro_T L2
ENSG00000179088 C12orf42 954447 sc-eQTL 7.20e-03 0.454 0.167 0.05 Pro_T L2
ENSG00000198431 TXNRD1 234678 sc-eQTL 1.45e-01 -0.22 0.15 0.05 Pro_T L2
ENSG00000204954 C12orf73 484749 sc-eQTL 9.14e-01 0.0189 0.175 0.05 Pro_T L2
ENSG00000235162 C12orf75 -784833 sc-eQTL 9.40e-01 0.00976 0.13 0.05 Pro_T L2
ENSG00000255150 EID3 146718 sc-eQTL 3.62e-01 -0.179 0.196 0.05 Pro_T L2
ENSG00000111696 NT5DC3 609223 sc-eQTL 1.91e-01 0.281 0.214 0.052 gdT L2
ENSG00000111727 HCFC2 385926 sc-eQTL 8.58e-01 0.0399 0.222 0.052 gdT L2
ENSG00000120837 NFYB 312216 sc-eQTL 9.83e-01 -0.00458 0.213 0.052 gdT L2
ENSG00000136044 APPL2 -785746 sc-eQTL 5.06e-01 -0.138 0.206 0.052 gdT L2
ENSG00000136051 WASHC4 -656867 sc-eQTL 8.57e-01 0.0439 0.243 0.052 gdT L2
ENSG00000139372 TDG 484635 sc-eQTL 2.31e-01 0.257 0.213 0.052 gdT L2
ENSG00000151131 C12orf45 -535859 sc-eQTL 5.28e-01 0.153 0.242 0.052 gdT L2
ENSG00000166598 HSP90B1 520350 sc-eQTL 3.62e-01 -0.206 0.226 0.052 gdT L2
ENSG00000171310 CHST11 -4838 sc-eQTL 2.19e-01 -0.246 0.199 0.052 gdT L2
ENSG00000179088 C12orf42 954447 sc-eQTL 6.91e-01 -0.0844 0.212 0.052 gdT L2
ENSG00000198431 TXNRD1 234678 sc-eQTL 9.73e-01 0.00813 0.238 0.052 gdT L2
ENSG00000204954 C12orf73 484749 sc-eQTL 7.98e-01 0.0555 0.216 0.052 gdT L2
ENSG00000235162 C12orf75 -784833 sc-eQTL 3.72e-01 -0.172 0.191 0.052 gdT L2
ENSG00000255150 EID3 146718 sc-eQTL 9.79e-02 0.388 0.233 0.052 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000179088 C12orf42 954447 eQTL 0.0255 0.102 0.0454 0.0 0.0 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000120837 \N 312216 1.59e-06 1e-06 1.57e-07 7.39e-07 1.78e-07 5.26e-07 1.02e-06 1.4e-07 1.13e-06 3.09e-07 1.37e-06 5.01e-07 2.02e-06 2.81e-07 3.63e-07 5.87e-07 5.63e-07 4.4e-07 5.36e-07 6.76e-07 2.55e-07 1.2e-06 6.04e-07 3.29e-07 1.98e-06 2.4e-07 8.34e-07 5.31e-07 9.15e-07 8.51e-07 5.23e-07 2.06e-07 5.71e-08 6.95e-07 4.2e-07 2.25e-07 4.61e-07 6.78e-08 7.63e-08 9.5e-09 3.5e-08 1.3e-06 6.13e-08 1.56e-08 1.6e-07 1.34e-07 1.3e-07 8.93e-08 8e-08
ENSG00000179088 C12orf42 954447 2.67e-07 1.16e-07 3.69e-08 1.82e-07 8.83e-08 1e-07 1.41e-07 5.49e-08 1.41e-07 4.38e-08 1.6e-07 8.02e-08 1.3e-07 6.38e-08 5.43e-08 7.26e-08 4.63e-08 1.1e-07 5.39e-08 4.42e-08 1.04e-07 1.26e-07 1.32e-07 4.26e-08 1.33e-07 1.13e-07 1.06e-07 9.15e-08 1.03e-07 1.1e-07 9.58e-08 3.06e-08 2.91e-08 8.55e-08 8.98e-08 3.97e-08 5.04e-08 9.26e-08 7.92e-08 3.18e-08 4.36e-08 1.37e-07 4.19e-08 0.0 6.92e-08 1.83e-08 1.26e-07 3.92e-09 4.73e-08