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Genes within 1Mb (chr12:104382213:A:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000111696 NT5DC3 540979 sc-eQTL 6.28e-02 0.344 0.184 0.05 CD4_CTL L2
ENSG00000111727 HCFC2 317682 sc-eQTL 8.21e-01 -0.0476 0.21 0.05 CD4_CTL L2
ENSG00000120837 NFYB 243972 sc-eQTL 5.62e-01 0.122 0.209 0.05 CD4_CTL L2
ENSG00000136044 APPL2 -853990 sc-eQTL 7.14e-01 0.0758 0.206 0.05 CD4_CTL L2
ENSG00000136051 WASHC4 -725111 sc-eQTL 9.03e-01 -0.0242 0.198 0.05 CD4_CTL L2
ENSG00000139372 TDG 416391 sc-eQTL 4.72e-01 0.158 0.22 0.05 CD4_CTL L2
ENSG00000151131 C12orf45 -604103 sc-eQTL 4.59e-01 0.148 0.199 0.05 CD4_CTL L2
ENSG00000166598 HSP90B1 452106 sc-eQTL 5.36e-01 0.116 0.187 0.05 CD4_CTL L2
ENSG00000171310 CHST11 -73082 sc-eQTL 5.88e-01 0.0964 0.178 0.05 CD4_CTL L2
ENSG00000179088 C12orf42 886203 sc-eQTL 2.56e-01 -0.217 0.19 0.05 CD4_CTL L2
ENSG00000198431 TXNRD1 166434 sc-eQTL 6.01e-01 -0.112 0.213 0.05 CD4_CTL L2
ENSG00000204954 C12orf73 416505 sc-eQTL 5.23e-02 -0.4 0.205 0.05 CD4_CTL L2
ENSG00000235162 C12orf75 -853077 sc-eQTL 3.85e-01 0.104 0.12 0.05 CD4_CTL L2
ENSG00000255150 EID3 78474 sc-eQTL 3.18e-01 -0.212 0.212 0.05 CD4_CTL L2
ENSG00000111727 HCFC2 317682 sc-eQTL 7.32e-01 0.0748 0.218 0.05 NK_HLA L2
ENSG00000120837 NFYB 243972 sc-eQTL 5.66e-01 0.127 0.221 0.05 NK_HLA L2
ENSG00000136044 APPL2 -853990 sc-eQTL 3.83e-01 0.179 0.205 0.05 NK_HLA L2
ENSG00000136051 WASHC4 -725111 sc-eQTL 3.41e-01 -0.203 0.212 0.05 NK_HLA L2
ENSG00000139372 TDG 416391 sc-eQTL 5.79e-01 -0.122 0.219 0.05 NK_HLA L2
ENSG00000151131 C12orf45 -604103 sc-eQTL 4.97e-01 -0.146 0.214 0.05 NK_HLA L2
ENSG00000166598 HSP90B1 452106 sc-eQTL 9.71e-02 0.356 0.213 0.05 NK_HLA L2
ENSG00000171310 CHST11 -73082 sc-eQTL 4.92e-01 -0.129 0.187 0.05 NK_HLA L2
ENSG00000198431 TXNRD1 166434 sc-eQTL 9.57e-01 -0.0125 0.23 0.05 NK_HLA L2
ENSG00000204954 C12orf73 416505 sc-eQTL 5.10e-01 0.131 0.199 0.05 NK_HLA L2
ENSG00000235162 C12orf75 -853077 sc-eQTL 4.43e-01 -0.118 0.154 0.05 NK_HLA L2
ENSG00000255150 EID3 78474 sc-eQTL 8.82e-01 -0.0309 0.208 0.05 NK_HLA L2
ENSG00000111696 NT5DC3 540979 sc-eQTL 9.29e-01 0.0212 0.236 0.052 PB L2
ENSG00000111727 HCFC2 317682 sc-eQTL 1.91e-01 -0.264 0.201 0.052 PB L2
ENSG00000120837 NFYB 243972 sc-eQTL 5.01e-01 -0.159 0.235 0.052 PB L2
ENSG00000136044 APPL2 -853990 sc-eQTL 4.11e-02 -0.517 0.25 0.052 PB L2
ENSG00000136051 WASHC4 -725111 sc-eQTL 4.67e-01 0.158 0.217 0.052 PB L2
ENSG00000136052 SLC41A2 -576531 sc-eQTL 1.85e-01 -0.306 0.23 0.052 PB L2
ENSG00000139372 TDG 416391 sc-eQTL 9.12e-01 0.0266 0.24 0.052 PB L2
ENSG00000151131 C12orf45 -604103 sc-eQTL 5.96e-01 -0.121 0.228 0.052 PB L2
ENSG00000166598 HSP90B1 452106 sc-eQTL 4.71e-01 0.0799 0.11 0.052 PB L2
ENSG00000171310 CHST11 -73082 sc-eQTL 9.63e-01 -0.00959 0.206 0.052 PB L2
ENSG00000179088 C12orf42 886203 sc-eQTL 1.15e-01 0.304 0.192 0.052 PB L2
ENSG00000198431 TXNRD1 166434 sc-eQTL 4.24e-01 -0.165 0.206 0.052 PB L2
ENSG00000204954 C12orf73 416505 sc-eQTL 5.20e-01 -0.155 0.241 0.052 PB L2
ENSG00000235162 C12orf75 -853077 sc-eQTL 8.26e-01 0.0351 0.16 0.052 PB L2
ENSG00000255150 EID3 78474 sc-eQTL 1.85e-01 0.331 0.248 0.052 PB L2
ENSG00000111696 NT5DC3 540979 sc-eQTL 7.39e-01 -0.0728 0.218 0.058 gdT L2
ENSG00000111727 HCFC2 317682 sc-eQTL 3.83e-01 -0.197 0.225 0.058 gdT L2
ENSG00000120837 NFYB 243972 sc-eQTL 6.62e-01 0.0943 0.215 0.058 gdT L2
ENSG00000136044 APPL2 -853990 sc-eQTL 9.07e-01 0.0246 0.209 0.058 gdT L2
ENSG00000136051 WASHC4 -725111 sc-eQTL 3.09e-02 -0.529 0.243 0.058 gdT L2
ENSG00000139372 TDG 416391 sc-eQTL 2.31e-02 -0.49 0.214 0.058 gdT L2
ENSG00000151131 C12orf45 -604103 sc-eQTL 3.33e-01 0.238 0.245 0.058 gdT L2
ENSG00000166598 HSP90B1 452106 sc-eQTL 9.56e-01 0.0128 0.229 0.058 gdT L2
ENSG00000171310 CHST11 -73082 sc-eQTL 4.23e-01 -0.163 0.203 0.058 gdT L2
ENSG00000179088 C12orf42 886203 sc-eQTL 1.51e-01 0.309 0.214 0.058 gdT L2
ENSG00000198431 TXNRD1 166434 sc-eQTL 8.93e-01 -0.0323 0.241 0.058 gdT L2
ENSG00000204954 C12orf73 416505 sc-eQTL 3.81e-02 -0.451 0.216 0.058 gdT L2
ENSG00000235162 C12orf75 -853077 sc-eQTL 3.84e-01 0.169 0.194 0.058 gdT L2
ENSG00000255150 EID3 78474 sc-eQTL 2.14e-01 -0.296 0.237 0.058 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000204954 C12orf73 416505 eQTL 0.0389 -0.18 0.0872 0.0 0.0 0.0437
ENSG00000213442 RPL18AP3 116904 eQTL 0.0112 -0.0795 0.0312 0.00135 0.0 0.0437

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000166598 \N 452106 8.25e-07 8.16e-07 2.75e-07 4.72e-07 1.07e-07 2.95e-07 5.2e-07 7.79e-08 5.88e-07 2.62e-07 6.28e-07 3.84e-07 9.65e-07 1.97e-07 2.81e-07 2.23e-07 3.52e-07 3.44e-07 3.3e-07 1.91e-07 2.01e-07 4.11e-07 4.08e-07 1.34e-07 1.06e-06 2.54e-07 2.56e-07 3.62e-07 3.99e-07 6.81e-07 2.83e-07 6.77e-08 5.6e-08 2.33e-07 3.37e-07 1.58e-07 5.15e-07 1.42e-07 8.24e-08 6.46e-08 1.03e-07 7.2e-07 5.81e-08 1.74e-07 6.59e-08 4.28e-08 9.83e-08 3.7e-08 5.86e-08
ENSG00000204954 C12orf73 416505 1.05e-06 9.27e-07 3.2e-07 7.82e-07 9.77e-08 3.08e-07 6.06e-07 9.69e-08 8.32e-07 3.22e-07 9.07e-07 5.15e-07 1.21e-06 2.4e-07 3.56e-07 3.41e-07 5.55e-07 3.95e-07 3.95e-07 3.57e-07 2.5e-07 5.5e-07 5.63e-07 2.19e-07 1.47e-06 2.54e-07 3.68e-07 4.77e-07 5.42e-07 8.59e-07 3.68e-07 4.1e-08 5.63e-08 3.91e-07 3.42e-07 2.42e-07 6.19e-07 1.46e-07 1.41e-07 2.45e-07 1.36e-07 1.01e-06 1.22e-07 2.07e-07 8.68e-08 7.22e-08 8.84e-08 1.15e-07 5.25e-08
ENSG00000213442 RPL18AP3 116904 8.53e-06 1.24e-05 9.83e-07 6.9e-06 1.72e-06 3.88e-06 9.67e-06 1.32e-06 9.4e-06 4.2e-06 1.06e-05 4.74e-06 1.38e-05 3.72e-06 2.06e-06 5.84e-06 4.09e-06 3.78e-06 2.58e-06 2.79e-06 3.64e-06 8.17e-06 6.91e-06 2.41e-06 1.32e-05 2.37e-06 4.46e-06 3.16e-06 7.34e-06 7.78e-06 4.81e-06 8.06e-07 8.08e-07 2.82e-06 4.81e-06 2.03e-06 1.79e-06 1.42e-06 1.76e-06 1.01e-06 7.83e-07 1.17e-05 1.42e-06 2.01e-07 7.72e-07 1.47e-06 1.15e-06 7.32e-07 5.66e-07
ENSG00000235162 \N -853077 2.69e-07 1.34e-07 6.26e-08 2.24e-07 9.24e-08 9.9e-08 1.44e-07 5.33e-08 1.45e-07 4.94e-08 1.62e-07 8.55e-08 1.52e-07 7.37e-08 6.04e-08 7.3e-08 3.98e-08 1.21e-07 6.92e-08 4.78e-08 1.19e-07 1.28e-07 1.45e-07 3.42e-08 1.5e-07 1.21e-07 1.07e-07 1.01e-07 1.09e-07 1.03e-07 9.64e-08 3.66e-08 3.61e-08 8.89e-08 3.4e-08 3.28e-08 6.04e-08 8.37e-08 6.58e-08 5.35e-08 5.44e-08 1.4e-07 4.17e-08 1.05e-08 5.75e-08 1.65e-08 1.19e-07 0.0 4.88e-08