Genes within 1Mb (chr12:104021466:C:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111727 HCFC2 -43065 eQTL 3.61e-02 0.0402 0.0192 0.0 0.0 0.181
ENSG00000120820 GLT8D2 -42717 pQTL 3.31e-02 -0.083 0.0389 0.0 0.0 0.184
ENSG00000139372 TDG 55644 eQTL 3.36e-07 -0.118 0.023 0.0 0.0 0.181
ENSG00000166598 HSP90B1 91359 eQTL 8.49e-09 0.119 0.0205 0.0401 0.0227 0.181
ENSG00000198431 TXNRD1 -194313 eQTL 1.46e-01 0.0291 0.02 0.00445 0.00105 0.181
ENSG00000204954 C12orf73 55758 eQTL 2.44e-10 0.297 0.0464 0.0 0.0 0.181
ENSG00000214198 TTC41P 91255 eQTL 2.20e-03 -0.155 0.0506 0.0 0.0 0.181
ENSG00000257681 AC025265.1 252608 eQTL 2.95e-02 0.105 0.0482 0.0 0.0 0.181
ENSG00000279176 AC079316.2 -530607 eQTL 2.37e-02 -0.076 0.0336 0.00128 0.0 0.181


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000111727 HCFC2 -43065 1.53e-05 2.15e-05 1.98e-06 9.8e-06 2.4e-06 7.14e-06 2.07e-05 2.39e-06 1.4e-05 6.58e-06 1.9e-05 7.45e-06 2.62e-05 6.43e-06 4.35e-06 7.72e-06 8.14e-06 1.18e-05 3.52e-06 3.29e-06 6.48e-06 1.31e-05 1.39e-05 3.99e-06 2.42e-05 4.65e-06 7.34e-06 5.51e-06 1.49e-05 1.28e-05 9.4e-06 1.02e-06 1.2e-06 3.63e-06 6.34e-06 2.62e-06 1.84e-06 1.95e-06 2.05e-06 1.4e-06 1.02e-06 2.01e-05 1.97e-06 1.44e-07 8.89e-07 1.96e-06 1.75e-06 7.5e-07 4.4e-07
ENSG00000166598 HSP90B1 91359 9.82e-06 1.25e-05 6.5e-07 5.99e-06 1.89e-06 4.19e-06 1.02e-05 1.49e-06 6.61e-06 4.26e-06 1.06e-05 4.92e-06 1.3e-05 3.7e-06 2.19e-06 4.66e-06 3.97e-06 5.56e-06 2.23e-06 2.52e-06 3.38e-06 7.6e-06 6.87e-06 2.21e-06 1.23e-05 2.4e-06 4.39e-06 2.99e-06 7.52e-06 7.74e-06 4.46e-06 4.61e-07 7.24e-07 2.6e-06 3.7e-06 1.15e-06 1.03e-06 5.58e-07 1.41e-06 9.52e-07 4.44e-07 1.18e-05 1.09e-06 1.54e-07 7.83e-07 8.09e-07 1.03e-06 5.51e-07 4.54e-07
ENSG00000204954 C12orf73 55758 1.37e-05 1.76e-05 1.36e-06 8.45e-06 2.36e-06 6.19e-06 1.65e-05 2.15e-06 1.07e-05 5.48e-06 1.58e-05 6.66e-06 2.16e-05 5.19e-06 3.64e-06 6.57e-06 6.8e-06 9.78e-06 2.87e-06 2.92e-06 6.03e-06 1.1e-05 1.11e-05 3.31e-06 2e-05 4.49e-06 6.34e-06 4.89e-06 1.3e-05 1.03e-05 7.63e-06 9.81e-07 1.27e-06 3.31e-06 5.46e-06 2.09e-06 1.64e-06 1.95e-06 2.2e-06 1.07e-06 7.83e-07 1.71e-05 1.59e-06 1.61e-07 7.94e-07 1.74e-06 1.35e-06 7.12e-07 5.59e-07