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Genes within 1Mb (chr12:103612967:G:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000111696 NT5DC3 -228267 sc-eQTL 3.30e-01 -0.187 0.191 0.051 B_Activated L2
ENSG00000111727 HCFC2 -451564 sc-eQTL 7.52e-01 0.0667 0.211 0.051 B_Activated L2
ENSG00000120837 NFYB -525274 sc-eQTL 8.12e-02 -0.396 0.226 0.051 B_Activated L2
ENSG00000139372 TDG -352855 sc-eQTL 5.91e-01 0.122 0.227 0.051 B_Activated L2
ENSG00000166598 HSP90B1 -317140 sc-eQTL 6.19e-01 0.122 0.246 0.051 B_Activated L2
ENSG00000171310 CHST11 -842328 sc-eQTL 3.66e-01 0.192 0.212 0.051 B_Activated L2
ENSG00000179088 C12orf42 116957 sc-eQTL 2.51e-01 -0.215 0.187 0.051 B_Activated L2
ENSG00000198431 TXNRD1 -602812 sc-eQTL 5.66e-01 -0.129 0.225 0.051 B_Activated L2
ENSG00000204954 C12orf73 -352741 sc-eQTL 3.06e-01 0.211 0.205 0.051 B_Activated L2
ENSG00000255150 EID3 -690772 sc-eQTL 9.78e-01 0.00583 0.212 0.051 B_Activated L2
ENSG00000111696 NT5DC3 -228267 sc-eQTL 8.29e-01 -0.0399 0.185 0.05 CD4_CTL L2
ENSG00000111727 HCFC2 -451564 sc-eQTL 9.98e-01 -0.000523 0.21 0.05 CD4_CTL L2
ENSG00000120837 NFYB -525274 sc-eQTL 2.91e-01 -0.22 0.208 0.05 CD4_CTL L2
ENSG00000139372 TDG -352855 sc-eQTL 8.49e-01 0.0419 0.22 0.05 CD4_CTL L2
ENSG00000166598 HSP90B1 -317140 sc-eQTL 2.04e-01 0.237 0.186 0.05 CD4_CTL L2
ENSG00000171310 CHST11 -842328 sc-eQTL 8.11e-01 -0.0425 0.178 0.05 CD4_CTL L2
ENSG00000179088 C12orf42 116957 sc-eQTL 5.26e-01 0.121 0.19 0.05 CD4_CTL L2
ENSG00000198431 TXNRD1 -602812 sc-eQTL 4.37e-01 0.166 0.213 0.05 CD4_CTL L2
ENSG00000204954 C12orf73 -352741 sc-eQTL 4.61e-01 -0.152 0.206 0.05 CD4_CTL L2
ENSG00000255150 EID3 -690772 sc-eQTL 2.93e-01 -0.223 0.211 0.05 CD4_CTL L2
ENSG00000111696 NT5DC3 -228267 sc-eQTL 9.50e-01 -0.0128 0.203 0.05 CD8_TEM L2
ENSG00000111727 HCFC2 -451564 sc-eQTL 7.29e-02 0.394 0.218 0.05 CD8_TEM L2
ENSG00000120837 NFYB -525274 sc-eQTL 5.90e-01 -0.113 0.21 0.05 CD8_TEM L2
ENSG00000139372 TDG -352855 sc-eQTL 6.63e-01 -0.0982 0.225 0.05 CD8_TEM L2
ENSG00000166598 HSP90B1 -317140 sc-eQTL 1.76e-01 0.284 0.209 0.05 CD8_TEM L2
ENSG00000171310 CHST11 -842328 sc-eQTL 8.06e-01 -0.0546 0.222 0.05 CD8_TEM L2
ENSG00000179088 C12orf42 116957 sc-eQTL 2.12e-01 -0.263 0.21 0.05 CD8_TEM L2
ENSG00000198431 TXNRD1 -602812 sc-eQTL 2.68e-01 0.246 0.222 0.05 CD8_TEM L2
ENSG00000204954 C12orf73 -352741 sc-eQTL 8.93e-01 -0.0292 0.216 0.05 CD8_TEM L2
ENSG00000255150 EID3 -690772 sc-eQTL 8.24e-01 0.0497 0.223 0.05 CD8_TEM L2
ENSG00000111696 NT5DC3 -228267 sc-eQTL 7.16e-01 0.0807 0.221 0.051 cDC L2
ENSG00000111727 HCFC2 -451564 sc-eQTL 7.17e-02 0.348 0.192 0.051 cDC L2
ENSG00000120837 NFYB -525274 sc-eQTL 3.34e-01 0.2 0.207 0.051 cDC L2
ENSG00000139372 TDG -352855 sc-eQTL 6.14e-01 0.108 0.213 0.051 cDC L2
ENSG00000166598 HSP90B1 -317140 sc-eQTL 3.97e-01 0.16 0.189 0.051 cDC L2
ENSG00000171310 CHST11 -842328 sc-eQTL 7.21e-01 -0.0665 0.186 0.051 cDC L2
ENSG00000179088 C12orf42 116957 sc-eQTL 3.40e-01 -0.135 0.14 0.051 cDC L2
ENSG00000198431 TXNRD1 -602812 sc-eQTL 4.95e-01 -0.135 0.197 0.051 cDC L2
ENSG00000204954 C12orf73 -352741 sc-eQTL 9.98e-01 -0.000432 0.197 0.051 cDC L2
ENSG00000255150 EID3 -690772 sc-eQTL 1.30e-01 -0.276 0.181 0.051 cDC L2
ENSG00000111696 NT5DC3 -228267 sc-eQTL 6.50e-02 0.371 0.2 0.054 pDC L2
ENSG00000111727 HCFC2 -451564 sc-eQTL 7.97e-01 -0.059 0.228 0.054 pDC L2
ENSG00000120837 NFYB -525274 sc-eQTL 5.82e-01 0.131 0.238 0.054 pDC L2
ENSG00000139372 TDG -352855 sc-eQTL 9.39e-01 -0.0156 0.203 0.054 pDC L2
ENSG00000166598 HSP90B1 -317140 sc-eQTL 2.57e-01 -0.18 0.158 0.054 pDC L2
ENSG00000171310 CHST11 -842328 sc-eQTL 1.74e-01 0.277 0.203 0.054 pDC L2
ENSG00000179088 C12orf42 116957 sc-eQTL 1.52e-01 -0.296 0.205 0.054 pDC L2
ENSG00000198431 TXNRD1 -602812 sc-eQTL 1.74e-01 -0.302 0.222 0.054 pDC L2
ENSG00000204954 C12orf73 -352741 sc-eQTL 6.81e-01 0.0812 0.197 0.054 pDC L2
ENSG00000255150 EID3 -690772 sc-eQTL 7.56e-01 -0.057 0.183 0.054 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111727 HCFC2 -451564 eQTL 0.0396 -0.0869 0.0422 0.0 0.0 0.0309
ENSG00000179088 C12orf42 116957 eQTL 0.000809 0.183 0.0546 0.0 0.0 0.0309
ENSG00000214198 TTC41P -317244 eQTL 0.0354 -0.235 0.112 0.00115 0.0 0.0309

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000111727 HCFC2 -451564 1.11e-06 6.76e-07 2.15e-07 4.34e-07 9.93e-08 2.63e-07 6.08e-07 1.78e-07 6.53e-07 2.88e-07 9.46e-07 4.75e-07 9.65e-07 1.59e-07 3.31e-07 3.57e-07 5.63e-07 4.25e-07 2.92e-07 2.63e-07 2.49e-07 5.18e-07 4.08e-07 2.6e-07 1.02e-06 2.44e-07 4.55e-07 3.78e-07 5.56e-07 7.09e-07 3.68e-07 3.28e-08 8.37e-08 1.67e-07 3.47e-07 2.25e-07 1.31e-07 1.14e-07 7.54e-08 8.43e-09 1.45e-07 6.27e-07 6.04e-08 1.11e-08 1.89e-07 3.87e-08 1.21e-07 4.41e-08 5.4e-08