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Genes within 1Mb (chr12:103469468:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000111696 NT5DC3 -371766 sc-eQTL 9.21e-01 0.0192 0.194 0.052 DC L1
ENSG00000111727 HCFC2 -595063 sc-eQTL 7.55e-01 0.0651 0.208 0.052 DC L1
ENSG00000120837 NFYB -668773 sc-eQTL 7.85e-01 -0.0511 0.187 0.052 DC L1
ENSG00000139372 TDG -496354 sc-eQTL 8.59e-01 0.0339 0.191 0.052 DC L1
ENSG00000166598 HSP90B1 -460639 sc-eQTL 3.22e-01 0.124 0.125 0.052 DC L1
ENSG00000171310 CHST11 -985827 sc-eQTL 4.22e-01 -0.131 0.163 0.052 DC L1
ENSG00000179088 C12orf42 -26542 sc-eQTL 1.04e-01 -0.266 0.163 0.052 DC L1
ENSG00000198431 TXNRD1 -746311 sc-eQTL 1.20e-01 -0.279 0.178 0.052 DC L1
ENSG00000204954 C12orf73 -496240 sc-eQTL 6.04e-01 -0.103 0.197 0.052 DC L1
ENSG00000255150 EID3 -834271 sc-eQTL 6.36e-02 -0.34 0.182 0.052 DC L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000017427 IGF1 987724 sc-eQTL 3.61e-01 -0.037 0.0404 0.051 B_Activated L2
ENSG00000111696 NT5DC3 -371766 sc-eQTL 4.54e-01 0.141 0.188 0.051 B_Activated L2
ENSG00000111727 HCFC2 -595063 sc-eQTL 9.22e-01 -0.0202 0.207 0.051 B_Activated L2
ENSG00000120837 NFYB -668773 sc-eQTL 2.11e-01 -0.278 0.222 0.051 B_Activated L2
ENSG00000139372 TDG -496354 sc-eQTL 2.45e-01 0.259 0.222 0.051 B_Activated L2
ENSG00000166598 HSP90B1 -460639 sc-eQTL 3.66e-01 0.218 0.24 0.051 B_Activated L2
ENSG00000171310 CHST11 -985827 sc-eQTL 5.37e-01 0.129 0.208 0.051 B_Activated L2
ENSG00000179088 C12orf42 -26542 sc-eQTL 6.18e-02 -0.342 0.182 0.051 B_Activated L2
ENSG00000198431 TXNRD1 -746311 sc-eQTL 4.98e-02 -0.43 0.218 0.051 B_Activated L2
ENSG00000204954 C12orf73 -496240 sc-eQTL 5.96e-01 -0.107 0.201 0.051 B_Activated L2
ENSG00000255150 EID3 -834271 sc-eQTL 6.96e-01 -0.0812 0.207 0.051 B_Activated L2
ENSG00000111696 NT5DC3 -371766 sc-eQTL 1.96e-01 -0.225 0.173 0.052 CD4_CTL L2
ENSG00000111727 HCFC2 -595063 sc-eQTL 8.06e-01 0.0487 0.197 0.052 CD4_CTL L2
ENSG00000120837 NFYB -668773 sc-eQTL 8.42e-01 0.0393 0.196 0.052 CD4_CTL L2
ENSG00000139372 TDG -496354 sc-eQTL 2.62e-01 -0.232 0.206 0.052 CD4_CTL L2
ENSG00000166598 HSP90B1 -460639 sc-eQTL 3.58e-01 0.161 0.175 0.052 CD4_CTL L2
ENSG00000171310 CHST11 -985827 sc-eQTL 5.82e-01 0.0921 0.167 0.052 CD4_CTL L2
ENSG00000179088 C12orf42 -26542 sc-eQTL 1.76e-01 0.242 0.178 0.052 CD4_CTL L2
ENSG00000198431 TXNRD1 -746311 sc-eQTL 1.13e-01 -0.317 0.199 0.052 CD4_CTL L2
ENSG00000204954 C12orf73 -496240 sc-eQTL 7.09e-01 -0.0725 0.194 0.052 CD4_CTL L2
ENSG00000255150 EID3 -834271 sc-eQTL 9.22e-01 -0.0196 0.199 0.052 CD4_CTL L2
ENSG00000111696 NT5DC3 -371766 sc-eQTL 5.41e-01 0.116 0.189 0.05 CD8_TEM L2
ENSG00000111727 HCFC2 -595063 sc-eQTL 1.53e-02 0.495 0.202 0.05 CD8_TEM L2
ENSG00000120837 NFYB -668773 sc-eQTL 7.90e-01 -0.0522 0.196 0.05 CD8_TEM L2
ENSG00000139372 TDG -496354 sc-eQTL 9.29e-01 0.0188 0.21 0.05 CD8_TEM L2
ENSG00000166598 HSP90B1 -460639 sc-eQTL 9.01e-01 0.0244 0.196 0.05 CD8_TEM L2
ENSG00000171310 CHST11 -985827 sc-eQTL 9.75e-01 -0.00655 0.207 0.05 CD8_TEM L2
ENSG00000179088 C12orf42 -26542 sc-eQTL 1.59e-01 -0.277 0.196 0.05 CD8_TEM L2
ENSG00000198431 TXNRD1 -746311 sc-eQTL 4.80e-01 -0.147 0.207 0.05 CD8_TEM L2
ENSG00000204954 C12orf73 -496240 sc-eQTL 8.72e-01 -0.0325 0.201 0.05 CD8_TEM L2
ENSG00000255150 EID3 -834271 sc-eQTL 9.59e-01 -0.0108 0.208 0.05 CD8_TEM L2
ENSG00000111727 HCFC2 -595063 sc-eQTL 3.94e-01 0.166 0.195 0.051 NK_CD56bright L2
ENSG00000120837 NFYB -668773 sc-eQTL 7.87e-01 -0.0534 0.198 0.051 NK_CD56bright L2
ENSG00000139372 TDG -496354 sc-eQTL 4.00e-01 0.169 0.201 0.051 NK_CD56bright L2
ENSG00000166598 HSP90B1 -460639 sc-eQTL 3.70e-02 0.412 0.196 0.051 NK_CD56bright L2
ENSG00000171310 CHST11 -985827 sc-eQTL 6.16e-01 0.0856 0.17 0.051 NK_CD56bright L2
ENSG00000198431 TXNRD1 -746311 sc-eQTL 6.40e-01 0.0938 0.2 0.051 NK_CD56bright L2
ENSG00000204954 C12orf73 -496240 sc-eQTL 9.90e-01 -0.00272 0.21 0.051 NK_CD56bright L2
ENSG00000255150 EID3 -834271 sc-eQTL 7.88e-01 -0.0534 0.198 0.051 NK_CD56bright L2
ENSG00000017427 IGF1 987724 sc-eQTL 6.95e-01 -0.0268 0.0683 0.05 Pro_T L2
ENSG00000111696 NT5DC3 -371766 sc-eQTL 6.59e-01 -0.0757 0.171 0.05 Pro_T L2
ENSG00000111727 HCFC2 -595063 sc-eQTL 9.46e-02 0.31 0.185 0.05 Pro_T L2
ENSG00000120837 NFYB -668773 sc-eQTL 4.69e-03 0.54 0.189 0.05 Pro_T L2
ENSG00000139372 TDG -496354 sc-eQTL 6.84e-01 0.0744 0.182 0.05 Pro_T L2
ENSG00000166598 HSP90B1 -460639 sc-eQTL 6.39e-01 -0.0599 0.128 0.05 Pro_T L2
ENSG00000171310 CHST11 -985827 sc-eQTL 9.31e-01 0.0157 0.181 0.05 Pro_T L2
ENSG00000179088 C12orf42 -26542 sc-eQTL 3.78e-01 0.154 0.175 0.05 Pro_T L2
ENSG00000198431 TXNRD1 -746311 sc-eQTL 4.22e-01 0.125 0.155 0.05 Pro_T L2
ENSG00000204954 C12orf73 -496240 sc-eQTL 9.30e-01 0.0159 0.18 0.05 Pro_T L2
ENSG00000255150 EID3 -834271 sc-eQTL 2.56e-01 -0.229 0.201 0.05 Pro_T L2
ENSG00000111696 NT5DC3 -371766 sc-eQTL 7.26e-01 0.078 0.222 0.051 cDC L2
ENSG00000111727 HCFC2 -595063 sc-eQTL 9.91e-01 0.00218 0.194 0.051 cDC L2
ENSG00000120837 NFYB -668773 sc-eQTL 4.23e-01 -0.167 0.208 0.051 cDC L2
ENSG00000139372 TDG -496354 sc-eQTL 5.00e-01 0.144 0.214 0.051 cDC L2
ENSG00000166598 HSP90B1 -460639 sc-eQTL 4.57e-02 0.377 0.187 0.051 cDC L2
ENSG00000171310 CHST11 -985827 sc-eQTL 8.22e-01 0.0422 0.187 0.051 cDC L2
ENSG00000179088 C12orf42 -26542 sc-eQTL 6.82e-01 -0.058 0.141 0.051 cDC L2
ENSG00000198431 TXNRD1 -746311 sc-eQTL 5.53e-01 0.118 0.198 0.051 cDC L2
ENSG00000204954 C12orf73 -496240 sc-eQTL 5.24e-01 0.126 0.197 0.051 cDC L2
ENSG00000255150 EID3 -834271 sc-eQTL 3.69e-02 -0.38 0.181 0.051 cDC L2
ENSG00000111696 NT5DC3 -371766 sc-eQTL 8.43e-01 -0.0395 0.199 0.054 pDC L2
ENSG00000111727 HCFC2 -595063 sc-eQTL 3.11e-01 0.228 0.224 0.054 pDC L2
ENSG00000120837 NFYB -668773 sc-eQTL 3.33e-01 0.227 0.234 0.054 pDC L2
ENSG00000139372 TDG -496354 sc-eQTL 5.96e-01 0.106 0.2 0.054 pDC L2
ENSG00000166598 HSP90B1 -460639 sc-eQTL 8.60e-01 -0.0276 0.156 0.054 pDC L2
ENSG00000171310 CHST11 -985827 sc-eQTL 2.18e-01 -0.247 0.2 0.054 pDC L2
ENSG00000179088 C12orf42 -26542 sc-eQTL 1.71e-01 -0.278 0.202 0.054 pDC L2
ENSG00000198431 TXNRD1 -746311 sc-eQTL 1.30e-01 -0.331 0.218 0.054 pDC L2
ENSG00000204954 C12orf73 -496240 sc-eQTL 8.37e-01 -0.04 0.194 0.054 pDC L2
ENSG00000255150 EID3 -834271 sc-eQTL 4.80e-01 -0.127 0.18 0.054 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000179088 C12orf42 -26542 eQTL 0.000113 0.165 0.0425 0.0 0.0 0.0476
ENSG00000204954 C12orf73 -496240 eQTL 0.0184 -0.192 0.0811 0.0 0.0 0.0476

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000179088 C12orf42 -26542 2.73e-05 2.8e-05 5.7e-06 1.5e-05 5.29e-06 1.32e-05 3.58e-05 3.74e-06 2.57e-05 1.31e-05 3.26e-05 1.52e-05 4.02e-05 1.24e-05 5.8e-06 1.48e-05 1.5e-05 2.17e-05 7.36e-06 5.66e-06 1.16e-05 2.59e-05 2.66e-05 7.57e-06 3.91e-05 6.84e-06 1.14e-05 9.69e-06 2.67e-05 2.15e-05 1.59e-05 1.58e-06 2e-06 6.69e-06 1.06e-05 4.5e-06 2.73e-06 3.18e-06 4.1e-06 3.2e-06 1.73e-06 3.42e-05 3.21e-06 4.21e-07 1.99e-06 3.47e-06 3.74e-06 1.35e-06 1.23e-06