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Genes within 1Mb (chr12:103194056:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000111696 NT5DC3 -647178 sc-eQTL 7.90e-01 0.0495 0.186 0.052 CD4_CTL L2
ENSG00000111727 HCFC2 -870475 sc-eQTL 2.63e-02 -0.467 0.209 0.052 CD4_CTL L2
ENSG00000120837 NFYB -944185 sc-eQTL 8.51e-02 0.361 0.209 0.052 CD4_CTL L2
ENSG00000139372 TDG -771766 sc-eQTL 3.65e-01 0.2 0.221 0.052 CD4_CTL L2
ENSG00000166598 HSP90B1 -736051 sc-eQTL 7.29e-02 -0.336 0.186 0.052 CD4_CTL L2
ENSG00000179088 C12orf42 -301954 sc-eQTL 4.72e-01 0.138 0.192 0.052 CD4_CTL L2
ENSG00000204954 C12orf73 -771652 sc-eQTL 7.42e-01 -0.0683 0.208 0.052 CD4_CTL L2
ENSG00000111696 NT5DC3 -647178 sc-eQTL 3.50e-02 -0.399 0.188 0.051 CD8_TCM L2
ENSG00000111727 HCFC2 -870475 sc-eQTL 8.20e-01 0.0483 0.212 0.051 CD8_TCM L2
ENSG00000120837 NFYB -944185 sc-eQTL 1.96e-01 0.275 0.212 0.051 CD8_TCM L2
ENSG00000139372 TDG -771766 sc-eQTL 5.94e-01 0.112 0.21 0.051 CD8_TCM L2
ENSG00000166598 HSP90B1 -736051 sc-eQTL 5.70e-01 -0.114 0.2 0.051 CD8_TCM L2
ENSG00000179088 C12orf42 -301954 sc-eQTL 2.67e-01 0.218 0.196 0.051 CD8_TCM L2
ENSG00000204954 C12orf73 -771652 sc-eQTL 5.75e-01 -0.122 0.217 0.051 CD8_TCM L2
ENSG00000111696 NT5DC3 -647178 sc-eQTL 6.27e-01 0.0928 0.191 0.053 CD8_TEM L2
ENSG00000111727 HCFC2 -870475 sc-eQTL 2.60e-01 -0.233 0.207 0.053 CD8_TEM L2
ENSG00000120837 NFYB -944185 sc-eQTL 6.42e-02 -0.365 0.196 0.053 CD8_TEM L2
ENSG00000139372 TDG -771766 sc-eQTL 6.82e-01 -0.087 0.212 0.053 CD8_TEM L2
ENSG00000166598 HSP90B1 -736051 sc-eQTL 9.91e-03 -0.506 0.194 0.053 CD8_TEM L2
ENSG00000179088 C12orf42 -301954 sc-eQTL 8.09e-01 0.048 0.198 0.053 CD8_TEM L2
ENSG00000204954 C12orf73 -771652 sc-eQTL 6.43e-01 -0.0944 0.203 0.053 CD8_TEM L2
ENSG00000111727 HCFC2 -870475 sc-eQTL 8.31e-01 -0.0436 0.205 0.051 NK_CD56bright L2
ENSG00000120837 NFYB -944185 sc-eQTL 4.30e-01 0.164 0.207 0.051 NK_CD56bright L2
ENSG00000139372 TDG -771766 sc-eQTL 8.78e-01 -0.0325 0.211 0.051 NK_CD56bright L2
ENSG00000166598 HSP90B1 -736051 sc-eQTL 2.32e-02 -0.47 0.205 0.051 NK_CD56bright L2
ENSG00000204954 C12orf73 -771652 sc-eQTL 8.93e-01 -0.0296 0.22 0.051 NK_CD56bright L2
ENSG00000111727 HCFC2 -870475 sc-eQTL 9.23e-01 -0.0203 0.21 0.053 NK_HLA L2
ENSG00000120837 NFYB -944185 sc-eQTL 8.44e-03 0.558 0.21 0.053 NK_HLA L2
ENSG00000139372 TDG -771766 sc-eQTL 3.65e-01 0.191 0.21 0.053 NK_HLA L2
ENSG00000166598 HSP90B1 -736051 sc-eQTL 6.93e-02 -0.375 0.205 0.053 NK_HLA L2
ENSG00000204954 C12orf73 -771652 sc-eQTL 2.71e-01 -0.211 0.191 0.053 NK_HLA L2
ENSG00000111696 NT5DC3 -647178 sc-eQTL 2.47e-01 -0.241 0.208 0.064 gdT L2
ENSG00000111727 HCFC2 -870475 sc-eQTL 7.39e-01 -0.0719 0.216 0.064 gdT L2
ENSG00000120837 NFYB -944185 sc-eQTL 9.99e-01 0.000162 0.206 0.064 gdT L2
ENSG00000139372 TDG -771766 sc-eQTL 1.38e-01 -0.308 0.206 0.064 gdT L2
ENSG00000166598 HSP90B1 -736051 sc-eQTL 3.22e-02 -0.467 0.216 0.064 gdT L2
ENSG00000179088 C12orf42 -301954 sc-eQTL 9.38e-01 -0.016 0.206 0.064 gdT L2
ENSG00000204954 C12orf73 -771652 sc-eQTL 4.71e-01 0.151 0.209 0.064 gdT L2
ENSG00000281344 HELLPAR 996471 sc-eQTL 8.12e-01 -0.0448 0.188 0.064 gdT L2
ENSG00000111696 NT5DC3 -647178 sc-eQTL 2.79e-01 0.21 0.194 0.051 intMono L2
ENSG00000111727 HCFC2 -870475 sc-eQTL 2.98e-01 -0.214 0.205 0.051 intMono L2
ENSG00000120837 NFYB -944185 sc-eQTL 2.31e-01 0.257 0.214 0.051 intMono L2
ENSG00000139372 TDG -771766 sc-eQTL 4.71e-01 0.145 0.2 0.051 intMono L2
ENSG00000166598 HSP90B1 -736051 sc-eQTL 1.76e-01 -0.242 0.178 0.051 intMono L2
ENSG00000204954 C12orf73 -771652 sc-eQTL 5.72e-01 -0.104 0.184 0.051 intMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000017427 IGF1 712312 eQTL 0.034 -0.0959 0.0452 0.0 0.0 0.0545

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000017427 IGF1 712312 4.21e-07 1.83e-07 7.87e-08 2.43e-07 1.02e-07 1.08e-07 2.74e-07 5.78e-08 1.85e-07 1.21e-07 2.07e-07 1.91e-07 2.74e-07 8.66e-08 1.01e-07 9.48e-08 6.63e-08 2.33e-07 8e-08 8.69e-08 1.23e-07 1.81e-07 1.81e-07 3.67e-08 2.59e-07 1.51e-07 1.29e-07 1.42e-07 1.37e-07 1.81e-07 1.39e-07 5.82e-08 4.98e-08 9.72e-08 7.44e-08 5.51e-08 5.62e-08 5.36e-08 5.8e-08 6.07e-08 3.68e-08 1.63e-07 2.89e-08 1.14e-08 8.43e-08 6.83e-09 9.07e-08 1.11e-08 5.65e-08