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Genes within 1Mb (chr12:102045105:T:TA):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000017427 IGF1 -436639 sc-eQTL 5.16e-03 0.107 0.0378 0.051 B_Activated L2
ENSG00000075188 NUP37 -75015 sc-eQTL 2.08e-01 -0.253 0.2 0.051 B_Activated L2
ENSG00000111666 CHPT1 348158 sc-eQTL 3.69e-01 -0.133 0.148 0.051 B_Activated L2
ENSG00000111670 GNPTAB 214146 sc-eQTL 8.60e-02 0.361 0.209 0.051 B_Activated L2
ENSG00000120800 UTP20 765000 sc-eQTL 6.28e-01 0.0987 0.204 0.051 B_Activated L2
ENSG00000120805 ARL1 637333 sc-eQTL 2.22e-01 0.257 0.21 0.051 B_Activated L2
ENSG00000120860 WASHC3 -17044 sc-eQTL 7.07e-01 0.0754 0.2 0.051 B_Activated L2
ENSG00000136048 DRAM1 167525 sc-eQTL 4.41e-01 0.155 0.201 0.051 B_Activated L2
ENSG00000139351 SYCP3 305633 sc-eQTL 4.59e-02 -0.329 0.163 0.051 B_Activated L2
ENSG00000185480 PARPBP -75080 sc-eQTL 1.36e-01 0.248 0.165 0.051 B_Activated L2
ENSG00000281344 HELLPAR -152480 sc-eQTL 3.69e-01 -0.141 0.156 0.051 B_Activated L2
ENSG00000075188 NUP37 -75015 sc-eQTL 5.99e-01 0.114 0.216 0.05 CD4_CTL L2
ENSG00000111666 CHPT1 348158 sc-eQTL 6.62e-02 -0.397 0.215 0.05 CD4_CTL L2
ENSG00000111670 GNPTAB 214146 sc-eQTL 8.19e-01 0.0434 0.19 0.05 CD4_CTL L2
ENSG00000120800 UTP20 765000 sc-eQTL 9.19e-01 0.0212 0.209 0.05 CD4_CTL L2
ENSG00000120805 ARL1 637333 sc-eQTL 3.71e-01 -0.198 0.221 0.05 CD4_CTL L2
ENSG00000120860 WASHC3 -17044 sc-eQTL 6.91e-01 0.0844 0.212 0.05 CD4_CTL L2
ENSG00000017427 IGF1 -436639 sc-eQTL 1.03e-03 0.45 0.134 0.059 PB L2
ENSG00000075188 NUP37 -75015 sc-eQTL 4.32e-01 0.148 0.188 0.059 PB L2
ENSG00000111666 CHPT1 348158 sc-eQTL 3.86e-01 -0.127 0.146 0.059 PB L2
ENSG00000111670 GNPTAB 214146 sc-eQTL 7.19e-01 0.0758 0.21 0.059 PB L2
ENSG00000120800 UTP20 765000 sc-eQTL 2.02e-01 0.308 0.24 0.059 PB L2
ENSG00000120805 ARL1 637333 sc-eQTL 7.26e-01 0.0522 0.148 0.059 PB L2
ENSG00000120860 WASHC3 -17044 sc-eQTL 7.65e-01 0.0514 0.171 0.059 PB L2
ENSG00000136048 DRAM1 167525 sc-eQTL 2.58e-01 -0.197 0.173 0.059 PB L2
ENSG00000139351 SYCP3 305633 sc-eQTL 6.13e-01 0.102 0.202 0.059 PB L2
ENSG00000185480 PARPBP -75080 sc-eQTL 9.21e-01 0.0184 0.185 0.059 PB L2
ENSG00000281344 HELLPAR -152480 sc-eQTL 7.48e-02 0.304 0.169 0.059 PB L2
ENSG00000017427 IGF1 -436639 sc-eQTL 6.90e-01 -0.0266 0.0667 0.05 Pro_T L2
ENSG00000075188 NUP37 -75015 sc-eQTL 3.06e-02 -0.29 0.133 0.05 Pro_T L2
ENSG00000111666 CHPT1 348158 sc-eQTL 3.75e-01 -0.158 0.178 0.05 Pro_T L2
ENSG00000111670 GNPTAB 214146 sc-eQTL 2.49e-01 0.152 0.131 0.05 Pro_T L2
ENSG00000120800 UTP20 765000 sc-eQTL 4.42e-01 -0.145 0.188 0.05 Pro_T L2
ENSG00000120805 ARL1 637333 sc-eQTL 4.44e-01 0.109 0.142 0.05 Pro_T L2
ENSG00000120860 WASHC3 -17044 sc-eQTL 8.25e-01 -0.0343 0.155 0.05 Pro_T L2
ENSG00000136048 DRAM1 167525 sc-eQTL 9.64e-01 0.00599 0.133 0.05 Pro_T L2
ENSG00000185480 PARPBP -75080 sc-eQTL 1.53e-01 -0.175 0.122 0.05 Pro_T L2
ENSG00000281344 HELLPAR -152480 sc-eQTL 9.49e-01 0.00863 0.135 0.05 Pro_T L2
ENSG00000075188 NUP37 -75015 sc-eQTL 5.54e-01 -0.147 0.247 0.052 gdT L2
ENSG00000111666 CHPT1 348158 sc-eQTL 7.49e-01 -0.0745 0.232 0.052 gdT L2
ENSG00000111670 GNPTAB 214146 sc-eQTL 1.11e-01 0.278 0.173 0.052 gdT L2
ENSG00000120800 UTP20 765000 sc-eQTL 6.45e-01 0.107 0.231 0.052 gdT L2
ENSG00000120805 ARL1 637333 sc-eQTL 5.61e-01 0.141 0.242 0.052 gdT L2
ENSG00000120860 WASHC3 -17044 sc-eQTL 9.97e-01 0.000858 0.226 0.052 gdT L2
ENSG00000136048 DRAM1 167525 sc-eQTL 9.45e-01 0.0159 0.229 0.052 gdT L2
ENSG00000185480 PARPBP -75080 sc-eQTL 5.66e-01 -0.129 0.225 0.052 gdT L2
ENSG00000281344 HELLPAR -152480 sc-eQTL 8.48e-01 -0.0397 0.206 0.052 gdT L2
ENSG00000075188 NUP37 -75015 sc-eQTL 8.05e-01 -0.0459 0.185 0.051 intMono L2
ENSG00000111666 CHPT1 348158 sc-eQTL 3.70e-01 -0.152 0.169 0.051 intMono L2
ENSG00000111670 GNPTAB 214146 sc-eQTL 2.98e-01 0.207 0.199 0.051 intMono L2
ENSG00000120800 UTP20 765000 sc-eQTL 7.18e-01 -0.0673 0.186 0.051 intMono L2
ENSG00000120805 ARL1 637333 sc-eQTL 7.17e-01 -0.0699 0.193 0.051 intMono L2
ENSG00000120860 WASHC3 -17044 sc-eQTL 3.48e-01 -0.175 0.186 0.051 intMono L2
ENSG00000136048 DRAM1 167525 sc-eQTL 8.26e-01 -0.0358 0.163 0.051 intMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000075188 NUP37 -75015 eQTL 0.0432 0.0868 0.0429 0.0 0.0 0.0417
ENSG00000111666 CHPT1 348158 eQTL 4.29e-04 -0.219 0.0619 0.0 0.0 0.0417
ENSG00000120860 WASHC3 -17044 eQTL 9.82e-05 -0.12 0.0306 0.0 0.0 0.0417
ENSG00000136048 DRAM1 167525 eQTL 0.0253 -0.0782 0.0349 0.0 0.0 0.0417

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina