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Genes within 1Mb (chr12:101946558:A:AT):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000075188 NUP37 -173562 sc-eQTL 7.01e-01 0.0681 0.177 0.051 cDC L2
ENSG00000111666 CHPT1 249611 sc-eQTL 6.22e-01 -0.0854 0.173 0.051 cDC L2
ENSG00000111670 GNPTAB 115599 sc-eQTL 4.34e-01 0.175 0.223 0.051 cDC L2
ENSG00000120800 UTP20 666453 sc-eQTL 9.83e-01 0.0043 0.202 0.051 cDC L2
ENSG00000120805 ARL1 538786 sc-eQTL 5.72e-01 0.118 0.209 0.051 cDC L2
ENSG00000120860 WASHC3 -115591 sc-eQTL 7.76e-01 -0.0562 0.197 0.051 cDC L2
ENSG00000136048 DRAM1 68978 sc-eQTL 7.66e-01 0.0457 0.153 0.051 cDC L2
ENSG00000185480 PARPBP -173627 sc-eQTL 5.38e-01 -0.108 0.175 0.051 cDC L2
ENSG00000075188 NUP37 -173562 sc-eQTL 2.20e-01 0.278 0.226 0.051 pDC L2
ENSG00000111666 CHPT1 249611 sc-eQTL 2.87e-01 -0.211 0.197 0.051 pDC L2
ENSG00000111670 GNPTAB 115599 sc-eQTL 1.56e-01 0.297 0.208 0.051 pDC L2
ENSG00000120800 UTP20 666453 sc-eQTL 8.58e-01 0.0374 0.208 0.051 pDC L2
ENSG00000120805 ARL1 538786 sc-eQTL 6.77e-01 -0.0916 0.219 0.051 pDC L2
ENSG00000120860 WASHC3 -115591 sc-eQTL 8.63e-01 -0.0331 0.191 0.051 pDC L2
ENSG00000136048 DRAM1 68978 sc-eQTL 8.15e-01 -0.0347 0.148 0.051 pDC L2
ENSG00000185480 PARPBP -173627 sc-eQTL 2.65e-01 -0.219 0.195 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111666 CHPT1 249611 eQTL 2.85e-03 -0.154 0.0515 0.0 0.0 0.0579
ENSG00000139351 SYCP3 207089 eQTL 0.0269 -0.162 0.0733 0.0 0.0 0.0579

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina