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Genes within 1Mb (chr12:101787084:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000017427 IGF1 -694660 sc-eQTL 7.95e-02 0.0725 0.0411 0.054 B_Activated L2
ENSG00000075188 NUP37 -333036 sc-eQTL 6.04e-01 -0.112 0.215 0.054 B_Activated L2
ENSG00000111666 CHPT1 90137 sc-eQTL 2.73e-01 0.174 0.158 0.054 B_Activated L2
ENSG00000111670 GNPTAB -43875 sc-eQTL 4.45e-01 0.173 0.225 0.054 B_Activated L2
ENSG00000120800 UTP20 506979 sc-eQTL 1.06e-01 0.353 0.217 0.054 B_Activated L2
ENSG00000120805 ARL1 379312 sc-eQTL 4.42e-01 0.174 0.225 0.054 B_Activated L2
ENSG00000120860 WASHC3 -275065 sc-eQTL 9.96e-01 0.00104 0.215 0.054 B_Activated L2
ENSG00000136048 DRAM1 -90496 sc-eQTL 6.10e-01 -0.11 0.216 0.054 B_Activated L2
ENSG00000139351 SYCP3 47612 sc-eQTL 4.59e-01 0.131 0.177 0.054 B_Activated L2
ENSG00000185480 PARPBP -333101 sc-eQTL 2.76e-01 0.194 0.178 0.054 B_Activated L2
ENSG00000281344 HELLPAR -410501 sc-eQTL 9.16e-01 0.0178 0.168 0.054 B_Activated L2
ENSG00000017427 IGF1 -694660 sc-eQTL 5.89e-01 -0.0764 0.141 0.059 PB L2
ENSG00000075188 NUP37 -333036 sc-eQTL 2.88e-01 -0.202 0.189 0.059 PB L2
ENSG00000111666 CHPT1 90137 sc-eQTL 2.65e-01 -0.164 0.147 0.059 PB L2
ENSG00000111670 GNPTAB -43875 sc-eQTL 3.48e-01 0.199 0.211 0.059 PB L2
ENSG00000120800 UTP20 506979 sc-eQTL 3.20e-01 -0.242 0.242 0.059 PB L2
ENSG00000120805 ARL1 379312 sc-eQTL 5.00e-01 0.101 0.149 0.059 PB L2
ENSG00000120860 WASHC3 -275065 sc-eQTL 1.80e-01 -0.231 0.171 0.059 PB L2
ENSG00000136048 DRAM1 -90496 sc-eQTL 2.75e-01 -0.191 0.174 0.059 PB L2
ENSG00000139351 SYCP3 47612 sc-eQTL 8.63e-02 -0.348 0.201 0.059 PB L2
ENSG00000185480 PARPBP -333101 sc-eQTL 6.90e-01 0.0745 0.186 0.059 PB L2
ENSG00000281344 HELLPAR -410501 sc-eQTL 8.16e-01 -0.0403 0.173 0.059 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111666 CHPT1 90137 eQTL 2.67e-09 -0.32 0.0532 0.0 0.0 0.0515
ENSG00000111670 GNPTAB -43875 eQTL 1.35e-03 -0.0957 0.0298 0.0 0.0 0.0515
ENSG00000136048 DRAM1 -90496 eQTL 1.29e-05 -0.132 0.0301 0.0 0.0 0.0515
ENSG00000258230 AC063950.1 13329 eQTL 0.00847 -0.155 0.0589 0.0 0.0 0.0515

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000111666 CHPT1 90137 4.82e-06 5.27e-06 6.91e-07 3.29e-06 1.6e-06 1.61e-06 4.6e-06 9.79e-07 5.1e-06 2.5e-06 5.59e-06 3.34e-06 7.51e-06 1.97e-06 1.35e-06 3.72e-06 1.84e-06 3.79e-06 1.48e-06 1.25e-06 3.12e-06 5.07e-06 4.64e-06 1.34e-06 6.86e-06 1.95e-06 2.33e-06 1.62e-06 4.43e-06 4.73e-06 2.73e-06 4.2e-07 5.51e-07 1.52e-06 2.05e-06 1.18e-06 9.63e-07 4.42e-07 1.04e-06 3.23e-07 4.59e-07 6.63e-06 3.83e-07 1.54e-07 5.95e-07 1.14e-06 8.08e-07 4.43e-07 5.74e-07