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Genes within 1Mb (chr12:101589901:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000017427 IGF1 -891843 sc-eQTL 7.55e-01 0.0133 0.0425 0.051 B_Activated L2
ENSG00000075188 NUP37 -530219 sc-eQTL 3.37e-01 -0.212 0.22 0.051 B_Activated L2
ENSG00000111666 CHPT1 -107046 sc-eQTL 6.37e-01 0.0771 0.163 0.051 B_Activated L2
ENSG00000111670 GNPTAB -241058 sc-eQTL 4.14e-01 0.189 0.231 0.051 B_Activated L2
ENSG00000120800 UTP20 309796 sc-eQTL 1.87e-01 0.296 0.223 0.051 B_Activated L2
ENSG00000120805 ARL1 182129 sc-eQTL 8.42e-01 -0.0463 0.232 0.051 B_Activated L2
ENSG00000120860 WASHC3 -472248 sc-eQTL 7.50e-01 -0.0703 0.221 0.051 B_Activated L2
ENSG00000136048 DRAM1 -287679 sc-eQTL 5.55e-01 -0.131 0.221 0.051 B_Activated L2
ENSG00000139351 SYCP3 -149571 sc-eQTL 3.10e-01 0.185 0.181 0.051 B_Activated L2
ENSG00000185480 PARPBP -530284 sc-eQTL 4.15e-01 0.149 0.183 0.051 B_Activated L2
ENSG00000281344 HELLPAR -607684 sc-eQTL 8.75e-01 -0.0271 0.172 0.051 B_Activated L2
ENSG00000075188 NUP37 -530219 sc-eQTL 5.38e-01 -0.129 0.209 0.05 CD4_CTL L2
ENSG00000111666 CHPT1 -107046 sc-eQTL 8.54e-01 0.0388 0.21 0.05 CD4_CTL L2
ENSG00000111670 GNPTAB -241058 sc-eQTL 1.24e-01 -0.282 0.183 0.05 CD4_CTL L2
ENSG00000120800 UTP20 309796 sc-eQTL 4.10e-01 0.167 0.202 0.05 CD4_CTL L2
ENSG00000120805 ARL1 182129 sc-eQTL 2.95e-01 0.224 0.213 0.05 CD4_CTL L2
ENSG00000120860 WASHC3 -472248 sc-eQTL 7.57e-01 -0.0635 0.205 0.05 CD4_CTL L2
ENSG00000075188 NUP37 -530219 sc-eQTL 7.32e-01 0.0705 0.206 0.05 CD8_TEM L2
ENSG00000111666 CHPT1 -107046 sc-eQTL 1.19e-01 0.303 0.193 0.05 CD8_TEM L2
ENSG00000111670 GNPTAB -241058 sc-eQTL 9.33e-01 0.0176 0.208 0.05 CD8_TEM L2
ENSG00000120800 UTP20 309796 sc-eQTL 7.57e-01 0.0691 0.223 0.05 CD8_TEM L2
ENSG00000120805 ARL1 182129 sc-eQTL 5.76e-01 0.12 0.214 0.05 CD8_TEM L2
ENSG00000120860 WASHC3 -472248 sc-eQTL 1.42e-01 0.274 0.186 0.05 CD8_TEM L2
ENSG00000136048 DRAM1 -287679 sc-eQTL 8.50e-01 -0.0389 0.206 0.05 CD8_TEM L2
ENSG00000075188 NUP37 -530219 sc-eQTL 4.85e-01 0.151 0.216 0.051 NK_CD56bright L2
ENSG00000111666 CHPT1 -107046 sc-eQTL 8.53e-01 -0.0291 0.157 0.051 NK_CD56bright L2
ENSG00000111670 GNPTAB -241058 sc-eQTL 3.82e-01 0.158 0.181 0.051 NK_CD56bright L2
ENSG00000120800 UTP20 309796 sc-eQTL 8.42e-01 -0.0421 0.212 0.051 NK_CD56bright L2
ENSG00000120805 ARL1 182129 sc-eQTL 5.23e-01 -0.132 0.207 0.051 NK_CD56bright L2
ENSG00000120860 WASHC3 -472248 sc-eQTL 5.76e-01 -0.105 0.187 0.051 NK_CD56bright L2
ENSG00000136048 DRAM1 -287679 sc-eQTL 8.44e-01 0.0388 0.197 0.051 NK_CD56bright L2
ENSG00000185480 PARPBP -530284 sc-eQTL 1.02e-01 0.339 0.206 0.051 NK_CD56bright L2
ENSG00000075188 NUP37 -530219 sc-eQTL 5.20e-02 -0.38 0.195 0.05 NK_HLA L2
ENSG00000111666 CHPT1 -107046 sc-eQTL 6.12e-01 0.102 0.201 0.05 NK_HLA L2
ENSG00000111670 GNPTAB -241058 sc-eQTL 6.97e-01 0.0632 0.162 0.05 NK_HLA L2
ENSG00000120800 UTP20 309796 sc-eQTL 5.21e-02 0.41 0.21 0.05 NK_HLA L2
ENSG00000120805 ARL1 182129 sc-eQTL 1.27e-01 -0.33 0.215 0.05 NK_HLA L2
ENSG00000120860 WASHC3 -472248 sc-eQTL 6.95e-01 0.0788 0.201 0.05 NK_HLA L2
ENSG00000136048 DRAM1 -287679 sc-eQTL 7.69e-01 0.0608 0.206 0.05 NK_HLA L2
ENSG00000185480 PARPBP -530284 sc-eQTL 7.24e-01 0.0718 0.203 0.05 NK_HLA L2
ENSG00000017427 IGF1 -891843 sc-eQTL 3.27e-01 -0.0695 0.0708 0.05 Pro_T L2
ENSG00000075188 NUP37 -530219 sc-eQTL 6.15e-01 -0.0721 0.143 0.05 Pro_T L2
ENSG00000111666 CHPT1 -107046 sc-eQTL 3.66e-01 0.171 0.189 0.05 Pro_T L2
ENSG00000111670 GNPTAB -241058 sc-eQTL 8.60e-01 -0.0247 0.14 0.05 Pro_T L2
ENSG00000120800 UTP20 309796 sc-eQTL 4.99e-01 -0.136 0.2 0.05 Pro_T L2
ENSG00000120805 ARL1 182129 sc-eQTL 8.31e-01 0.0324 0.151 0.05 Pro_T L2
ENSG00000120860 WASHC3 -472248 sc-eQTL 9.30e-01 -0.0145 0.165 0.05 Pro_T L2
ENSG00000136048 DRAM1 -287679 sc-eQTL 1.88e-01 -0.186 0.141 0.05 Pro_T L2
ENSG00000185480 PARPBP -530284 sc-eQTL 8.28e-01 0.0285 0.131 0.05 Pro_T L2
ENSG00000281344 HELLPAR -607684 sc-eQTL 9.64e-02 0.237 0.142 0.05 Pro_T L2
ENSG00000075188 NUP37 -530219 sc-eQTL 8.19e-02 -0.449 0.256 0.058 gdT L2
ENSG00000111666 CHPT1 -107046 sc-eQTL 2.20e-01 0.298 0.242 0.058 gdT L2
ENSG00000111670 GNPTAB -241058 sc-eQTL 6.21e-01 -0.0906 0.183 0.058 gdT L2
ENSG00000120800 UTP20 309796 sc-eQTL 7.69e-02 0.426 0.239 0.058 gdT L2
ENSG00000120805 ARL1 182129 sc-eQTL 5.75e-01 0.142 0.253 0.058 gdT L2
ENSG00000120860 WASHC3 -472248 sc-eQTL 7.75e-03 0.623 0.231 0.058 gdT L2
ENSG00000136048 DRAM1 -287679 sc-eQTL 7.25e-01 -0.0847 0.24 0.058 gdT L2
ENSG00000185480 PARPBP -530284 sc-eQTL 2.76e-01 -0.257 0.235 0.058 gdT L2
ENSG00000281344 HELLPAR -607684 sc-eQTL 7.49e-01 0.0693 0.216 0.058 gdT L2
ENSG00000075188 NUP37 -530219 sc-eQTL 5.25e-01 -0.124 0.194 0.052 ncMono L2
ENSG00000111666 CHPT1 -107046 sc-eQTL 3.97e-01 0.152 0.179 0.052 ncMono L2
ENSG00000111670 GNPTAB -241058 sc-eQTL 1.84e-01 -0.286 0.214 0.052 ncMono L2
ENSG00000120800 UTP20 309796 sc-eQTL 2.87e-02 -0.409 0.186 0.052 ncMono L2
ENSG00000120805 ARL1 182129 sc-eQTL 3.98e-01 -0.153 0.18 0.052 ncMono L2
ENSG00000120860 WASHC3 -472248 sc-eQTL 9.63e-01 0.00805 0.174 0.052 ncMono L2
ENSG00000136048 DRAM1 -287679 sc-eQTL 6.04e-01 0.0839 0.162 0.052 ncMono L2
ENSG00000075188 NUP37 -530219 sc-eQTL 4.04e-01 0.196 0.234 0.054 pDC L2
ENSG00000111666 CHPT1 -107046 sc-eQTL 3.86e-01 0.177 0.204 0.054 pDC L2
ENSG00000111670 GNPTAB -241058 sc-eQTL 5.51e-01 -0.129 0.216 0.054 pDC L2
ENSG00000120800 UTP20 309796 sc-eQTL 5.12e-01 0.141 0.215 0.054 pDC L2
ENSG00000120805 ARL1 182129 sc-eQTL 5.54e-01 0.134 0.226 0.054 pDC L2
ENSG00000120860 WASHC3 -472248 sc-eQTL 1.01e-01 -0.323 0.196 0.054 pDC L2
ENSG00000136048 DRAM1 -287679 sc-eQTL 1.18e-01 0.238 0.152 0.054 pDC L2
ENSG00000185480 PARPBP -530284 sc-eQTL 7.48e-01 0.0654 0.203 0.054 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111666 CHPT1 -107046 eQTL 6.59e-04 0.228 0.0667 0.0 0.0 0.0388
ENSG00000136048 DRAM1 -287679 eQTL 0.0475 0.0747 0.0376 0.0 0.0 0.0388

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina