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Genes within 1Mb (chr12:101010059:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000075089 ACTR6 810937 sc-eQTL 3.70e-01 0.187 0.208 0.05 CD4_CTL L2
ENSG00000111647 UHRF1BP1L 867185 sc-eQTL 8.35e-01 -0.0431 0.207 0.05 CD4_CTL L2
ENSG00000111666 CHPT1 -686888 sc-eQTL 1.81e-01 0.279 0.208 0.05 CD4_CTL L2
ENSG00000111670 GNPTAB -820900 sc-eQTL 2.65e-01 0.203 0.182 0.05 CD4_CTL L2
ENSG00000120800 UTP20 -270046 sc-eQTL 5.77e-01 -0.112 0.2 0.05 CD4_CTL L2
ENSG00000120805 ARL1 -397713 sc-eQTL 1.07e-01 -0.342 0.211 0.05 CD4_CTL L2
ENSG00000136021 SCYL2 742919 sc-eQTL 9.71e-01 0.00737 0.204 0.05 CD4_CTL L2
ENSG00000075089 ACTR6 810937 sc-eQTL 2.71e-01 0.199 0.181 0.05 CD8_TEM L2
ENSG00000111647 UHRF1BP1L 867185 sc-eQTL 3.31e-01 -0.189 0.194 0.05 CD8_TEM L2
ENSG00000111666 CHPT1 -686888 sc-eQTL 9.56e-01 0.0095 0.174 0.05 CD8_TEM L2
ENSG00000111670 GNPTAB -820900 sc-eQTL 1.80e-01 0.25 0.185 0.05 CD8_TEM L2
ENSG00000120800 UTP20 -270046 sc-eQTL 1.43e-01 0.292 0.199 0.05 CD8_TEM L2
ENSG00000120805 ARL1 -397713 sc-eQTL 5.78e-01 -0.106 0.191 0.05 CD8_TEM L2
ENSG00000136021 SCYL2 742919 sc-eQTL 2.78e-01 0.215 0.198 0.05 CD8_TEM L2
ENSG00000136048 DRAM1 -867521 sc-eQTL 9.16e-01 -0.0195 0.184 0.05 CD8_TEM L2
ENSG00000075089 ACTR6 810937 sc-eQTL 7.32e-01 0.0656 0.191 0.05 Pro_T L2
ENSG00000111647 UHRF1BP1L 867185 sc-eQTL 6.11e-01 0.0969 0.19 0.05 Pro_T L2
ENSG00000111666 CHPT1 -686888 sc-eQTL 2.34e-01 0.208 0.174 0.05 Pro_T L2
ENSG00000111670 GNPTAB -820900 sc-eQTL 5.54e-01 0.0765 0.129 0.05 Pro_T L2
ENSG00000120800 UTP20 -270046 sc-eQTL 7.11e-02 0.332 0.183 0.05 Pro_T L2
ENSG00000120805 ARL1 -397713 sc-eQTL 9.67e-03 0.358 0.137 0.05 Pro_T L2
ENSG00000136021 SCYL2 742919 sc-eQTL 6.52e-01 0.0839 0.186 0.05 Pro_T L2
ENSG00000136048 DRAM1 -867521 sc-eQTL 8.89e-01 0.0182 0.13 0.05 Pro_T L2
ENSG00000075089 ACTR6 810937 sc-eQTL 2.64e-01 0.205 0.183 0.051 intMono L2
ENSG00000111647 UHRF1BP1L 867185 sc-eQTL 1.31e-01 0.281 0.186 0.051 intMono L2
ENSG00000111666 CHPT1 -686888 sc-eQTL 7.95e-01 -0.042 0.161 0.051 intMono L2
ENSG00000111670 GNPTAB -820900 sc-eQTL 4.74e-01 -0.136 0.189 0.051 intMono L2
ENSG00000120800 UTP20 -270046 sc-eQTL 1.74e-01 -0.241 0.177 0.051 intMono L2
ENSG00000120805 ARL1 -397713 sc-eQTL 1.07e-01 0.296 0.183 0.051 intMono L2
ENSG00000136021 SCYL2 742919 sc-eQTL 7.53e-01 -0.0587 0.186 0.051 intMono L2
ENSG00000136048 DRAM1 -867521 sc-eQTL 8.75e-01 -0.0244 0.155 0.051 intMono L2
ENSG00000139354 GAS2L3 436376 sc-eQTL 3.44e-02 0.362 0.17 0.051 intMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111670 GNPTAB -820900 eQTL 2.85e-02 -0.0654 0.0298 0.00122 0.0 0.0525
ENSG00000196091 MYBPC1 -558294 pQTL 0.0216 -0.0897 0.039 0.00161 0.0 0.0502
ENSG00000238105 GOLGA2P5 836400 eQTL 0.0217 0.0616 0.0268 0.0 0.0 0.0525
ENSG00000280088 AC126474.2 975985 eQTL 0.0461 0.0578 0.0289 0.00135 0.0 0.0525

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000136021 \N 742919 3.02e-07 1.5e-07 6.15e-08 2.05e-07 1.01e-07 8.45e-08 1.99e-07 5.56e-08 1.59e-07 8.53e-08 1.63e-07 1.23e-07 2.05e-07 8.13e-08 5.36e-08 8.08e-08 4.31e-08 1.72e-07 7.09e-08 5.46e-08 1.22e-07 1.47e-07 1.62e-07 3.49e-08 1.98e-07 1.31e-07 1.2e-07 1.12e-07 1.32e-07 1.06e-07 1.09e-07 3.68e-08 3.56e-08 9.76e-08 3.12e-08 2.74e-08 5.51e-08 8.57e-08 6.41e-08 5.24e-08 6.28e-08 1.5e-07 4.87e-08 1.09e-08 3.36e-08 1.55e-08 8.98e-08 2e-09 4.69e-08