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Genes within 1Mb (chr1:78996581:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000137959 IFI44L 376659 sc-eQTL 7.08e-01 -0.0282 0.0753 0.628 B L1
ENSG00000137965 IFI44 346785 sc-eQTL 6.38e-01 0.0324 0.0687 0.628 B L1
ENSG00000273338 AC103591.3 992027 sc-eQTL 1.34e-01 0.101 0.0672 0.628 B L1
ENSG00000137959 IFI44L 376659 sc-eQTL 9.90e-01 -0.000861 0.0704 0.628 CD4T L1
ENSG00000137965 IFI44 346785 sc-eQTL 7.01e-01 -0.0258 0.0671 0.628 CD4T L1
ENSG00000137959 IFI44L 376659 sc-eQTL 9.59e-01 0.00367 0.0715 0.628 CD8T L1
ENSG00000137965 IFI44 346785 sc-eQTL 4.87e-01 -0.0487 0.0699 0.628 CD8T L1
ENSG00000273338 AC103591.3 992027 sc-eQTL 6.37e-02 0.145 0.0777 0.628 CD8T L1
ENSG00000137959 IFI44L 376659 sc-eQTL 8.25e-01 0.0148 0.0668 0.622 DC L1
ENSG00000137965 IFI44 346785 sc-eQTL 9.24e-01 -0.00628 0.0656 0.622 DC L1
ENSG00000273338 AC103591.3 992027 sc-eQTL 7.74e-01 0.0269 0.0934 0.622 DC L1
ENSG00000137959 IFI44L 376659 sc-eQTL 4.56e-01 0.04 0.0535 0.628 Mono L1
ENSG00000137965 IFI44 346785 sc-eQTL 5.93e-01 -0.0296 0.0552 0.628 Mono L1
ENSG00000273338 AC103591.3 992027 sc-eQTL 6.21e-01 0.0428 0.0863 0.628 Mono L1
ENSG00000137959 IFI44L 376659 sc-eQTL 1.97e-01 0.078 0.0602 0.629 NK L1
ENSG00000137965 IFI44 346785 sc-eQTL 7.83e-01 -0.0175 0.0635 0.629 NK L1
ENSG00000137959 IFI44L 376659 sc-eQTL 5.29e-01 -0.05 0.0792 0.628 Other_T L1
ENSG00000137965 IFI44 346785 sc-eQTL 5.59e-01 -0.0472 0.0807 0.628 Other_T L1
ENSG00000273338 AC103591.3 992027 sc-eQTL 2.15e-01 0.108 0.0869 0.628 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000137959 IFI44L 376659 sc-eQTL 9.18e-01 0.00909 0.088 0.625 B_Activated L2
ENSG00000137965 IFI44 346785 sc-eQTL 5.81e-01 -0.0491 0.0887 0.625 B_Activated L2
ENSG00000273338 AC103591.3 992027 sc-eQTL 2.19e-01 -0.118 0.0953 0.625 B_Activated L2
ENSG00000137959 IFI44L 376659 sc-eQTL 8.84e-01 -0.0121 0.0825 0.629 B_Intermediate L2
ENSG00000137965 IFI44 346785 sc-eQTL 4.58e-01 0.062 0.0834 0.629 B_Intermediate L2
ENSG00000273338 AC103591.3 992027 sc-eQTL 1.34e-01 0.118 0.0782 0.629 B_Intermediate L2
ENSG00000137959 IFI44L 376659 sc-eQTL 7.15e-01 -0.0263 0.072 0.629 B_Memory L2
ENSG00000137965 IFI44 346785 sc-eQTL 3.52e-01 -0.067 0.0719 0.629 B_Memory L2
ENSG00000273338 AC103591.3 992027 sc-eQTL 4.52e-01 0.0606 0.0805 0.629 B_Memory L2
ENSG00000137959 IFI44L 376659 sc-eQTL 8.96e-01 0.00932 0.071 0.628 B_Naive1 L2
ENSG00000137965 IFI44 346785 sc-eQTL 9.58e-01 -0.00385 0.0738 0.628 B_Naive1 L2
ENSG00000273338 AC103591.3 992027 sc-eQTL 1.59e-01 0.101 0.0715 0.628 B_Naive1 L2
ENSG00000137959 IFI44L 376659 sc-eQTL 6.97e-01 0.0281 0.072 0.629 B_Naive2 L2
ENSG00000137965 IFI44 346785 sc-eQTL 2.16e-01 -0.0975 0.0786 0.629 B_Naive2 L2
ENSG00000273338 AC103591.3 992027 sc-eQTL 7.83e-01 0.0229 0.0832 0.629 B_Naive2 L2
ENSG00000137959 IFI44L 376659 sc-eQTL 2.44e-01 -0.0882 0.0755 0.62 CD4_CTL L2
ENSG00000137965 IFI44 346785 sc-eQTL 5.34e-01 -0.0543 0.0872 0.62 CD4_CTL L2
ENSG00000137959 IFI44L 376659 sc-eQTL 9.17e-01 0.00781 0.0753 0.628 CD4_Naive L2
ENSG00000137965 IFI44 346785 sc-eQTL 1.36e-01 -0.114 0.076 0.628 CD4_Naive L2
ENSG00000137959 IFI44L 376659 sc-eQTL 6.85e-01 -0.0281 0.0694 0.628 CD4_TCM L2
ENSG00000137965 IFI44 346785 sc-eQTL 8.00e-01 0.0185 0.0726 0.628 CD4_TCM L2
ENSG00000137959 IFI44L 376659 sc-eQTL 4.83e-01 -0.0585 0.0832 0.628 CD4_TEM L2
ENSG00000137965 IFI44 346785 sc-eQTL 9.01e-01 0.0105 0.0841 0.628 CD4_TEM L2
ENSG00000137959 IFI44L 376659 sc-eQTL 3.67e-01 0.0646 0.0714 0.628 CD8_CTL L2
ENSG00000137965 IFI44 346785 sc-eQTL 1.34e-01 -0.12 0.0798 0.628 CD8_CTL L2
ENSG00000273338 AC103591.3 992027 sc-eQTL 1.23e-01 0.131 0.0846 0.628 CD8_CTL L2
ENSG00000137959 IFI44L 376659 sc-eQTL 9.74e-01 0.00245 0.0747 0.628 CD8_Naive L2
ENSG00000137965 IFI44 346785 sc-eQTL 4.56e-01 0.0572 0.0766 0.628 CD8_Naive L2
ENSG00000273338 AC103591.3 992027 sc-eQTL 5.19e-02 0.161 0.0822 0.628 CD8_Naive L2
ENSG00000137959 IFI44L 376659 sc-eQTL 6.48e-01 0.0433 0.0945 0.623 CD8_TCM L2
ENSG00000137965 IFI44 346785 sc-eQTL 4.23e-01 0.0687 0.0855 0.623 CD8_TCM L2
ENSG00000273338 AC103591.3 992027 sc-eQTL 9.88e-04 0.287 0.0857 0.623 CD8_TCM L2
ENSG00000137959 IFI44L 376659 sc-eQTL 2.53e-01 -0.0884 0.0772 0.63 CD8_TEM L2
ENSG00000137965 IFI44 346785 sc-eQTL 7.10e-01 0.0299 0.0803 0.63 CD8_TEM L2
ENSG00000273338 AC103591.3 992027 sc-eQTL 7.28e-01 -0.0294 0.0843 0.63 CD8_TEM L2
ENSG00000137959 IFI44L 376659 sc-eQTL 7.53e-01 -0.0243 0.0771 0.626 MAIT L2
ENSG00000137965 IFI44 346785 sc-eQTL 2.74e-01 -0.0936 0.0853 0.626 MAIT L2
ENSG00000273338 AC103591.3 992027 sc-eQTL 5.42e-01 0.0519 0.0849 0.626 MAIT L2
ENSG00000137959 IFI44L 376659 sc-eQTL 5.14e-01 0.0478 0.0731 0.627 NK_CD56bright L2
ENSG00000137965 IFI44 346785 sc-eQTL 5.75e-01 -0.0482 0.086 0.627 NK_CD56bright L2
ENSG00000137959 IFI44L 376659 sc-eQTL 8.24e-02 0.109 0.0626 0.629 NK_CD56dim L2
ENSG00000137965 IFI44 346785 sc-eQTL 7.01e-01 0.0259 0.0674 0.629 NK_CD56dim L2
ENSG00000137959 IFI44L 376659 sc-eQTL 8.86e-01 -0.0113 0.079 0.628 NK_HLA L2
ENSG00000137965 IFI44 346785 sc-eQTL 6.46e-02 -0.164 0.0883 0.628 NK_HLA L2
ENSG00000137959 IFI44L 376659 sc-eQTL 3.82e-01 0.0536 0.0611 0.629 NK_cytokine L2
ENSG00000137965 IFI44 346785 sc-eQTL 9.82e-01 0.00149 0.0651 0.629 NK_cytokine L2
ENSG00000137959 IFI44L 376659 sc-eQTL 8.68e-01 0.017 0.102 0.648 PB L2
ENSG00000137965 IFI44 346785 sc-eQTL 4.61e-01 0.0673 0.091 0.648 PB L2
ENSG00000273338 AC103591.3 992027 sc-eQTL 6.83e-01 0.0457 0.111 0.648 PB L2
ENSG00000137959 IFI44L 376659 sc-eQTL 5.11e-01 0.0461 0.0701 0.628 Pro_T L2
ENSG00000137965 IFI44 346785 sc-eQTL 7.28e-01 -0.0265 0.0762 0.628 Pro_T L2
ENSG00000273338 AC103591.3 992027 sc-eQTL 6.86e-01 -0.0292 0.0722 0.628 Pro_T L2
ENSG00000137959 IFI44L 376659 sc-eQTL 5.76e-01 0.0377 0.0673 0.628 Treg L2
ENSG00000137965 IFI44 346785 sc-eQTL 1.57e-01 0.0985 0.0693 0.628 Treg L2
ENSG00000137959 IFI44L 376659 sc-eQTL 5.05e-01 -0.0458 0.0686 0.622 cDC L2
ENSG00000137965 IFI44 346785 sc-eQTL 3.91e-01 -0.0596 0.0693 0.622 cDC L2
ENSG00000273338 AC103591.3 992027 sc-eQTL 6.17e-01 0.0486 0.0969 0.622 cDC L2
ENSG00000137959 IFI44L 376659 sc-eQTL 4.69e-01 0.0421 0.058 0.628 cMono_IL1B L2
ENSG00000137965 IFI44 346785 sc-eQTL 8.28e-01 -0.0132 0.0608 0.628 cMono_IL1B L2
ENSG00000273338 AC103591.3 992027 sc-eQTL 6.20e-01 0.0437 0.0881 0.628 cMono_IL1B L2
ENSG00000137959 IFI44L 376659 sc-eQTL 7.63e-01 -0.0181 0.0599 0.628 cMono_S100A L2
ENSG00000137965 IFI44 346785 sc-eQTL 5.34e-01 -0.0367 0.0589 0.628 cMono_S100A L2
ENSG00000273338 AC103591.3 992027 sc-eQTL 5.84e-01 0.0522 0.095 0.628 cMono_S100A L2
ENSG00000137959 IFI44L 376659 sc-eQTL 7.48e-02 -0.178 0.099 0.624 gdT L2
ENSG00000137965 IFI44 346785 sc-eQTL 7.98e-01 0.0261 0.102 0.624 gdT L2
ENSG00000273338 AC103591.3 992027 sc-eQTL 2.66e-01 0.11 0.0988 0.624 gdT L2
ENSG00000137959 IFI44L 376659 sc-eQTL 6.27e-01 -0.0311 0.0641 0.627 intMono L2
ENSG00000137965 IFI44 346785 sc-eQTL 5.86e-01 0.0341 0.0625 0.627 intMono L2
ENSG00000273338 AC103591.3 992027 sc-eQTL 5.53e-01 -0.0564 0.0949 0.627 intMono L2
ENSG00000137959 IFI44L 376659 sc-eQTL 5.53e-01 0.0352 0.0592 0.622 ncMono L2
ENSG00000137965 IFI44 346785 sc-eQTL 7.20e-01 -0.0224 0.0625 0.622 ncMono L2
ENSG00000273338 AC103591.3 992027 sc-eQTL 2.19e-01 0.113 0.0914 0.622 ncMono L2
ENSG00000137959 IFI44L 376659 sc-eQTL 7.59e-01 0.0232 0.0754 0.619 pDC L2
ENSG00000137965 IFI44 346785 sc-eQTL 7.31e-01 0.0264 0.0768 0.619 pDC L2
ENSG00000273338 AC103591.3 992027 sc-eQTL 9.60e-01 0.00489 0.0966 0.619 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000137959 IFI44L 376659 sc-eQTL 7.45e-01 -0.0256 0.0785 0.628 B_Memory LOneK1K
ENSG00000137965 IFI44 346785 sc-eQTL 8.84e-01 0.012 0.0822 0.628 B_Memory LOneK1K
ENSG00000273338 AC103591.3 992027 sc-eQTL 5.13e-01 0.0486 0.0742 0.628 B_Memory LOneK1K
ENSG00000137959 IFI44L 376659 sc-eQTL 9.13e-01 -0.00795 0.0725 0.628 B_Naive LOneK1K
ENSG00000137965 IFI44 346785 sc-eQTL 5.39e-01 -0.0463 0.0754 0.628 B_Naive LOneK1K
ENSG00000273338 AC103591.3 992027 sc-eQTL 2.19e-01 0.0853 0.0691 0.628 B_Naive LOneK1K
ENSG00000137959 IFI44L 376659 sc-eQTL 4.93e-01 0.0392 0.0571 0.628 CD14_Mono LOneK1K
ENSG00000137965 IFI44 346785 sc-eQTL 7.31e-01 -0.0203 0.0588 0.628 CD14_Mono LOneK1K
ENSG00000273338 AC103591.3 992027 sc-eQTL 5.40e-01 0.0537 0.0876 0.628 CD14_Mono LOneK1K
ENSG00000137959 IFI44L 376659 sc-eQTL 7.30e-01 0.0209 0.0604 0.629 CD16_Mono LOneK1K
ENSG00000137965 IFI44 346785 sc-eQTL 7.41e-01 -0.019 0.0574 0.629 CD16_Mono LOneK1K
ENSG00000273338 AC103591.3 992027 sc-eQTL 3.70e-01 0.085 0.0946 0.629 CD16_Mono LOneK1K
ENSG00000137959 IFI44L 376659 sc-eQTL 1.92e-01 0.0789 0.0603 0.629 NK_CD56dim LOneK1K
ENSG00000137965 IFI44 346785 sc-eQTL 6.64e-01 -0.0276 0.0635 0.629 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000137959 \N 376659 1.05e-06 6.42e-07 7.72e-08 3.77e-07 1.07e-07 1.74e-07 5.54e-07 9.07e-08 3.62e-07 2.01e-07 6.39e-07 3.68e-07 7.19e-07 1.23e-07 1.45e-07 1.96e-07 1.85e-07 3.67e-07 1.5e-07 8.41e-08 1.65e-07 3.1e-07 3.19e-07 1.32e-07 7.01e-07 2.32e-07 2.22e-07 1.97e-07 3.43e-07 4.51e-07 2.93e-07 5.38e-08 5.64e-08 1.23e-07 2.61e-07 5.2e-08 7.86e-08 5.8e-08 5.28e-08 5.25e-08 4.63e-08 5.29e-07 1.7e-08 1.55e-08 1.08e-07 1.32e-08 9.25e-08 0.0 4.66e-08
ENSG00000137965 \N 346785 1.29e-06 7.58e-07 9.16e-08 4.32e-07 1.07e-07 2.16e-07 6.18e-07 1.11e-07 4.43e-07 2.28e-07 8.58e-07 4.31e-07 9.37e-07 1.6e-07 2.15e-07 2.36e-07 3.13e-07 4.2e-07 1.81e-07 1.28e-07 1.89e-07 3.8e-07 4e-07 1.76e-07 9.15e-07 2.39e-07 2.62e-07 2.54e-07 4.15e-07 6.19e-07 3.67e-07 8.25e-08 5.68e-08 1.57e-07 3.04e-07 7.56e-08 1.05e-07 6.31e-08 6.29e-08 2.71e-08 8.35e-08 6.95e-07 2.99e-08 2.1e-08 1.26e-07 1.95e-08 9.52e-08 2.8e-09 5.61e-08