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Genes within 1Mb (chr1:78555654:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000036549 AC118549.1 872235 sc-eQTL 9.13e-01 0.0205 0.186 0.052 DC L1
ENSG00000077254 USP33 795802 sc-eQTL 7.62e-01 0.051 0.168 0.052 DC L1
ENSG00000137959 IFI44L -64268 sc-eQTL 6.83e-01 -0.058 0.142 0.052 DC L1
ENSG00000137965 IFI44 -94142 sc-eQTL 2.77e-01 -0.151 0.139 0.052 DC L1
ENSG00000162613 FUBP1 576544 sc-eQTL 8.64e-01 0.0318 0.185 0.052 DC L1
ENSG00000162614 NEXN 667141 sc-eQTL 2.51e-01 0.203 0.177 0.052 DC L1
ENSG00000162616 DNAJB4 576479 sc-eQTL 4.27e-01 -0.153 0.192 0.052 DC L1
ENSG00000180488 MIGA1 776030 sc-eQTL 4.12e-01 0.171 0.207 0.052 DC L1
ENSG00000273338 AC103591.3 551100 sc-eQTL 8.73e-01 0.0317 0.198 0.052 DC L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000036549 AC118549.1 872235 sc-eQTL 2.34e-01 0.263 0.22 0.05 CD4_CTL L2
ENSG00000077254 USP33 795802 sc-eQTL 4.49e-01 0.159 0.21 0.05 CD4_CTL L2
ENSG00000137959 IFI44L -64268 sc-eQTL 6.04e-02 0.307 0.163 0.05 CD4_CTL L2
ENSG00000137965 IFI44 -94142 sc-eQTL 1.08e-03 0.611 0.184 0.05 CD4_CTL L2
ENSG00000162613 FUBP1 576544 sc-eQTL 8.46e-01 0.0405 0.209 0.05 CD4_CTL L2
ENSG00000162616 DNAJB4 576479 sc-eQTL 3.84e-01 -0.179 0.205 0.05 CD4_CTL L2
ENSG00000180488 MIGA1 776030 sc-eQTL 5.84e-01 -0.117 0.214 0.05 CD4_CTL L2
ENSG00000036549 AC118549.1 872235 sc-eQTL 8.93e-01 -0.0276 0.205 0.051 CD8_TCM L2
ENSG00000077254 USP33 795802 sc-eQTL 3.33e-01 -0.199 0.205 0.051 CD8_TCM L2
ENSG00000137959 IFI44L -64268 sc-eQTL 8.39e-01 0.0401 0.197 0.051 CD8_TCM L2
ENSG00000137965 IFI44 -94142 sc-eQTL 3.88e-01 0.154 0.179 0.051 CD8_TCM L2
ENSG00000162613 FUBP1 576544 sc-eQTL 5.93e-01 0.1 0.187 0.051 CD8_TCM L2
ENSG00000162616 DNAJB4 576479 sc-eQTL 7.71e-01 0.0599 0.205 0.051 CD8_TCM L2
ENSG00000180488 MIGA1 776030 sc-eQTL 6.13e-01 -0.106 0.21 0.051 CD8_TCM L2
ENSG00000273338 AC103591.3 551100 sc-eQTL 1.46e-01 0.267 0.183 0.051 CD8_TCM L2
ENSG00000036549 AC118549.1 872235 sc-eQTL 6.97e-01 0.0901 0.231 0.05 CD8_TEM L2
ENSG00000077254 USP33 795802 sc-eQTL 9.41e-01 0.0173 0.232 0.05 CD8_TEM L2
ENSG00000137959 IFI44L -64268 sc-eQTL 7.45e-01 -0.0557 0.171 0.05 CD8_TEM L2
ENSG00000137965 IFI44 -94142 sc-eQTL 1.43e-01 0.26 0.177 0.05 CD8_TEM L2
ENSG00000162613 FUBP1 576544 sc-eQTL 6.92e-01 -0.0848 0.214 0.05 CD8_TEM L2
ENSG00000162616 DNAJB4 576479 sc-eQTL 8.71e-01 0.0349 0.215 0.05 CD8_TEM L2
ENSG00000180488 MIGA1 776030 sc-eQTL 1.68e-01 0.315 0.227 0.05 CD8_TEM L2
ENSG00000273338 AC103591.3 551100 sc-eQTL 8.56e-01 -0.0338 0.186 0.05 CD8_TEM L2
ENSG00000036549 AC118549.1 872235 sc-eQTL 2.71e-02 0.462 0.207 0.051 NK_CD56bright L2
ENSG00000077254 USP33 795802 sc-eQTL 9.14e-01 0.0225 0.209 0.051 NK_CD56bright L2
ENSG00000137959 IFI44L -64268 sc-eQTL 4.40e-01 0.119 0.154 0.051 NK_CD56bright L2
ENSG00000137965 IFI44 -94142 sc-eQTL 7.53e-01 -0.0571 0.181 0.051 NK_CD56bright L2
ENSG00000162613 FUBP1 576544 sc-eQTL 6.47e-01 0.0881 0.192 0.051 NK_CD56bright L2
ENSG00000162616 DNAJB4 576479 sc-eQTL 9.47e-01 -0.0134 0.2 0.051 NK_CD56bright L2
ENSG00000180488 MIGA1 776030 sc-eQTL 2.67e-01 -0.215 0.193 0.051 NK_CD56bright L2
ENSG00000036549 AC118549.1 872235 sc-eQTL 7.21e-01 0.0769 0.215 0.05 NK_HLA L2
ENSG00000077254 USP33 795802 sc-eQTL 4.88e-01 -0.147 0.212 0.05 NK_HLA L2
ENSG00000137959 IFI44L -64268 sc-eQTL 5.20e-01 0.106 0.165 0.05 NK_HLA L2
ENSG00000137965 IFI44 -94142 sc-eQTL 6.21e-01 0.0921 0.186 0.05 NK_HLA L2
ENSG00000162613 FUBP1 576544 sc-eQTL 5.48e-01 0.121 0.201 0.05 NK_HLA L2
ENSG00000162616 DNAJB4 576479 sc-eQTL 3.93e-01 -0.168 0.196 0.05 NK_HLA L2
ENSG00000180488 MIGA1 776030 sc-eQTL 8.63e-01 0.0355 0.205 0.05 NK_HLA L2
ENSG00000036549 AC118549.1 872235 sc-eQTL 9.78e-01 -0.00591 0.216 0.056 cDC L2
ENSG00000077254 USP33 795802 sc-eQTL 7.03e-01 -0.0708 0.185 0.056 cDC L2
ENSG00000137959 IFI44L -64268 sc-eQTL 8.61e-01 -0.0244 0.139 0.056 cDC L2
ENSG00000137965 IFI44 -94142 sc-eQTL 6.79e-01 -0.0584 0.141 0.056 cDC L2
ENSG00000162613 FUBP1 576544 sc-eQTL 7.23e-01 0.0684 0.192 0.056 cDC L2
ENSG00000162614 NEXN 667141 sc-eQTL 3.57e-01 0.144 0.156 0.056 cDC L2
ENSG00000162616 DNAJB4 576479 sc-eQTL 7.01e-01 0.0749 0.195 0.056 cDC L2
ENSG00000180488 MIGA1 776030 sc-eQTL 6.21e-01 0.106 0.215 0.056 cDC L2
ENSG00000273338 AC103591.3 551100 sc-eQTL 5.95e-01 -0.105 0.197 0.056 cDC L2
ENSG00000036549 AC118549.1 872235 sc-eQTL 4.05e-01 0.195 0.233 0.055 gdT L2
ENSG00000077254 USP33 795802 sc-eQTL 6.90e-01 -0.0882 0.221 0.055 gdT L2
ENSG00000137959 IFI44L -64268 sc-eQTL 8.96e-01 0.0264 0.202 0.055 gdT L2
ENSG00000137965 IFI44 -94142 sc-eQTL 6.15e-01 0.103 0.205 0.055 gdT L2
ENSG00000162613 FUBP1 576544 sc-eQTL 8.76e-01 -0.0353 0.226 0.055 gdT L2
ENSG00000162616 DNAJB4 576479 sc-eQTL 5.54e-01 -0.129 0.217 0.055 gdT L2
ENSG00000180488 MIGA1 776030 sc-eQTL 7.14e-01 0.0843 0.23 0.055 gdT L2
ENSG00000273338 AC103591.3 551100 sc-eQTL 6.12e-01 -0.102 0.2 0.055 gdT L2
ENSG00000036549 AC118549.1 872235 sc-eQTL 3.89e-01 -0.181 0.21 0.052 ncMono L2
ENSG00000077254 USP33 795802 sc-eQTL 6.48e-01 -0.0731 0.16 0.052 ncMono L2
ENSG00000137959 IFI44L -64268 sc-eQTL 1.55e-01 -0.179 0.125 0.052 ncMono L2
ENSG00000137965 IFI44 -94142 sc-eQTL 8.72e-02 -0.226 0.132 0.052 ncMono L2
ENSG00000162613 FUBP1 576544 sc-eQTL 7.20e-01 -0.0712 0.198 0.052 ncMono L2
ENSG00000162614 NEXN 667141 sc-eQTL 3.99e-01 -0.143 0.168 0.052 ncMono L2
ENSG00000162616 DNAJB4 576479 sc-eQTL 9.66e-01 0.00818 0.193 0.052 ncMono L2
ENSG00000180488 MIGA1 776030 sc-eQTL 5.31e-01 -0.13 0.208 0.052 ncMono L2
ENSG00000273338 AC103591.3 551100 sc-eQTL 7.61e-01 -0.0592 0.194 0.052 ncMono L2
ENSG00000036549 AC118549.1 872235 sc-eQTL 7.70e-01 -0.0553 0.189 0.065 pDC L2
ENSG00000077254 USP33 795802 sc-eQTL 5.32e-01 0.121 0.193 0.065 pDC L2
ENSG00000137959 IFI44L -64268 sc-eQTL 6.99e-01 -0.0571 0.147 0.065 pDC L2
ENSG00000137965 IFI44 -94142 sc-eQTL 3.42e-01 -0.143 0.15 0.065 pDC L2
ENSG00000162613 FUBP1 576544 sc-eQTL 2.86e-01 -0.201 0.187 0.065 pDC L2
ENSG00000162614 NEXN 667141 sc-eQTL 6.25e-01 0.0897 0.183 0.065 pDC L2
ENSG00000162616 DNAJB4 576479 sc-eQTL 4.46e-01 -0.145 0.19 0.065 pDC L2
ENSG00000180488 MIGA1 776030 sc-eQTL 5.71e-01 0.121 0.212 0.065 pDC L2
ENSG00000273338 AC103591.3 551100 sc-eQTL 5.84e-01 0.103 0.189 0.065 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000273338 AC103591.3 551100 eQTL 2.45e-02 0.12 0.0532 0.0 0.0 0.0368

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000137965 \N -94142 5.08e-06 5.09e-06 6.35e-07 3.21e-06 1.71e-06 1.56e-06 6.29e-06 1.18e-06 4.85e-06 2.78e-06 6.49e-06 3.17e-06 8.24e-06 1.97e-06 9.98e-07 3.81e-06 1.93e-06 3.93e-06 1.58e-06 1.68e-06 2.84e-06 5.38e-06 4.82e-06 2.01e-06 8.07e-06 2.07e-06 2.55e-06 1.74e-06 5.3e-06 5.44e-06 2.8e-06 4.81e-07 8.08e-07 2.54e-06 2.07e-06 1.59e-06 1.18e-06 5.61e-07 1.35e-06 7.73e-07 9.55e-07 6.44e-06 5.62e-07 1.58e-07 7.81e-07 1.06e-06 1.03e-06 7.08e-07 5.87e-07
ENSG00000273338 AC103591.3 551100 4.68e-07 2.4e-07 8.02e-08 2.41e-07 1.09e-07 1.25e-07 3.25e-07 7.98e-08 2.53e-07 1.46e-07 2.68e-07 2.11e-07 3.77e-07 8.26e-08 9.33e-08 1.33e-07 8.74e-08 2.87e-07 9.69e-08 7.4e-08 1.48e-07 2.3e-07 2.11e-07 6.52e-08 3.27e-07 2e-07 1.74e-07 1.61e-07 1.6e-07 2.1e-07 1.59e-07 5.38e-08 5.09e-08 1.17e-07 1.22e-07 5.05e-08 5.71e-08 5.8e-08 4.82e-08 8.09e-08 3.64e-08 2.19e-07 3.09e-08 1.43e-08 5.84e-08 8.24e-09 9.34e-08 0.0 4.74e-08