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Genes within 1Mb (chr1:78294912:G:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000036549 AC118549.1 611493 sc-eQTL 5.06e-02 0.403 0.205 0.051 CD8_TCM L2
ENSG00000077254 USP33 535060 sc-eQTL 2.84e-01 -0.223 0.207 0.051 CD8_TCM L2
ENSG00000137959 IFI44L -325010 sc-eQTL 8.61e-01 0.035 0.2 0.051 CD8_TCM L2
ENSG00000137965 IFI44 -354884 sc-eQTL 5.72e-01 -0.102 0.181 0.051 CD8_TCM L2
ENSG00000162613 FUBP1 315802 sc-eQTL 1.11e-01 0.301 0.188 0.051 CD8_TCM L2
ENSG00000162616 DNAJB4 315737 sc-eQTL 9.63e-02 -0.345 0.206 0.051 CD8_TCM L2
ENSG00000180488 MIGA1 515288 sc-eQTL 5.98e-01 -0.112 0.212 0.051 CD8_TCM L2
ENSG00000273338 AC103591.3 290358 sc-eQTL 4.86e-01 -0.13 0.186 0.051 CD8_TCM L2
ENSG00000036549 AC118549.1 611493 sc-eQTL 8.65e-01 0.0352 0.207 0.05 NK_HLA L2
ENSG00000077254 USP33 535060 sc-eQTL 8.61e-01 -0.0355 0.203 0.05 NK_HLA L2
ENSG00000137959 IFI44L -325010 sc-eQTL 2.75e-01 -0.173 0.157 0.05 NK_HLA L2
ENSG00000137965 IFI44 -354884 sc-eQTL 6.65e-01 0.0771 0.178 0.05 NK_HLA L2
ENSG00000162613 FUBP1 315802 sc-eQTL 3.30e-01 -0.188 0.193 0.05 NK_HLA L2
ENSG00000162616 DNAJB4 315737 sc-eQTL 4.35e-02 -0.379 0.187 0.05 NK_HLA L2
ENSG00000180488 MIGA1 515288 sc-eQTL 4.79e-01 0.139 0.196 0.05 NK_HLA L2
ENSG00000036549 AC118549.1 611493 sc-eQTL 7.98e-01 0.071 0.277 0.056 PB L2
ENSG00000077254 USP33 535060 sc-eQTL 9.98e-02 -0.398 0.24 0.056 PB L2
ENSG00000137959 IFI44L -325010 sc-eQTL 1.81e-01 -0.282 0.21 0.056 PB L2
ENSG00000137965 IFI44 -354884 sc-eQTL 8.14e-01 -0.0447 0.19 0.056 PB L2
ENSG00000162613 FUBP1 315802 sc-eQTL 8.32e-01 0.0488 0.229 0.056 PB L2
ENSG00000162614 NEXN 406399 sc-eQTL 4.73e-01 0.15 0.209 0.056 PB L2
ENSG00000162616 DNAJB4 315737 sc-eQTL 5.72e-01 -0.129 0.227 0.056 PB L2
ENSG00000180488 MIGA1 515288 sc-eQTL 1.82e-01 -0.352 0.262 0.056 PB L2
ENSG00000273338 AC103591.3 290358 sc-eQTL 8.11e-01 0.0557 0.232 0.056 PB L2
ENSG00000036549 AC118549.1 611493 sc-eQTL 9.20e-01 0.0206 0.204 0.05 Pro_T L2
ENSG00000077254 USP33 535060 sc-eQTL 4.43e-01 -0.145 0.189 0.05 Pro_T L2
ENSG00000137959 IFI44L -325010 sc-eQTL 2.34e-02 -0.327 0.143 0.05 Pro_T L2
ENSG00000137965 IFI44 -354884 sc-eQTL 6.99e-01 -0.061 0.158 0.05 Pro_T L2
ENSG00000162613 FUBP1 315802 sc-eQTL 6.21e-01 0.0858 0.173 0.05 Pro_T L2
ENSG00000162616 DNAJB4 315737 sc-eQTL 7.17e-01 -0.0715 0.197 0.05 Pro_T L2
ENSG00000180488 MIGA1 515288 sc-eQTL 1.45e-01 -0.28 0.191 0.05 Pro_T L2
ENSG00000273338 AC103591.3 290358 sc-eQTL 5.92e-02 0.281 0.148 0.05 Pro_T L2
ENSG00000036549 AC118549.1 611493 sc-eQTL 7.85e-03 0.619 0.23 0.052 gdT L2
ENSG00000077254 USP33 535060 sc-eQTL 9.54e-01 0.0129 0.223 0.052 gdT L2
ENSG00000137959 IFI44L -325010 sc-eQTL 8.30e-01 0.0439 0.203 0.052 gdT L2
ENSG00000137965 IFI44 -354884 sc-eQTL 7.94e-01 0.0541 0.207 0.052 gdT L2
ENSG00000162613 FUBP1 315802 sc-eQTL 2.21e-01 0.279 0.227 0.052 gdT L2
ENSG00000162616 DNAJB4 315737 sc-eQTL 5.39e-01 -0.135 0.219 0.052 gdT L2
ENSG00000180488 MIGA1 515288 sc-eQTL 9.36e-01 -0.0185 0.231 0.052 gdT L2
ENSG00000273338 AC103591.3 290358 sc-eQTL 9.16e-01 0.0214 0.202 0.052 gdT L2
ENSG00000036549 AC118549.1 611493 sc-eQTL 2.74e-01 0.232 0.211 0.051 intMono L2
ENSG00000077254 USP33 535060 sc-eQTL 6.90e-01 0.0703 0.176 0.051 intMono L2
ENSG00000137959 IFI44L -325010 sc-eQTL 9.73e-01 -0.00436 0.128 0.051 intMono L2
ENSG00000137965 IFI44 -354884 sc-eQTL 9.83e-01 0.00262 0.125 0.051 intMono L2
ENSG00000162613 FUBP1 315802 sc-eQTL 8.01e-01 -0.0487 0.193 0.051 intMono L2
ENSG00000162614 NEXN 406399 sc-eQTL 6.93e-01 -0.059 0.149 0.051 intMono L2
ENSG00000162616 DNAJB4 315737 sc-eQTL 5.37e-01 0.111 0.18 0.051 intMono L2
ENSG00000180488 MIGA1 515288 sc-eQTL 2.79e-01 0.214 0.197 0.051 intMono L2
ENSG00000273338 AC103591.3 290358 sc-eQTL 3.00e-01 -0.197 0.19 0.051 intMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000036549 AC118549.1 611493 eQTL 0.000138 0.0824 0.0215 0.00118 0.0 0.0618
ENSG00000077254 USP33 535060 eQTL 0.00368 -0.0607 0.0209 0.0 0.0 0.0618
ENSG00000137960 GIPC2 315370 pQTL 0.00699 0.113 0.0419 0.0 0.0 0.0636
ENSG00000162614 NEXN 406399 eQTL 0.0112 0.077 0.0303 0.00218 0.0 0.0618

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina