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Genes within 1Mb (chr1:78281383:C:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000036549 AC118549.1 597964 sc-eQTL 5.06e-02 0.403 0.205 0.051 CD8_TCM L2
ENSG00000077254 USP33 521531 sc-eQTL 2.84e-01 -0.223 0.207 0.051 CD8_TCM L2
ENSG00000137959 IFI44L -338539 sc-eQTL 8.61e-01 0.035 0.2 0.051 CD8_TCM L2
ENSG00000137965 IFI44 -368413 sc-eQTL 5.72e-01 -0.102 0.181 0.051 CD8_TCM L2
ENSG00000154027 AK5 999364 sc-eQTL 2.22e-01 0.249 0.203 0.051 CD8_TCM L2
ENSG00000162613 FUBP1 302273 sc-eQTL 1.11e-01 0.301 0.188 0.051 CD8_TCM L2
ENSG00000162616 DNAJB4 302208 sc-eQTL 9.63e-02 -0.345 0.206 0.051 CD8_TCM L2
ENSG00000180488 MIGA1 501759 sc-eQTL 5.98e-01 -0.112 0.212 0.051 CD8_TCM L2
ENSG00000273338 AC103591.3 276829 sc-eQTL 4.86e-01 -0.13 0.186 0.051 CD8_TCM L2
ENSG00000036549 AC118549.1 597964 sc-eQTL 8.65e-01 0.0352 0.207 0.05 NK_HLA L2
ENSG00000077254 USP33 521531 sc-eQTL 8.61e-01 -0.0355 0.203 0.05 NK_HLA L2
ENSG00000137959 IFI44L -338539 sc-eQTL 2.75e-01 -0.173 0.157 0.05 NK_HLA L2
ENSG00000137965 IFI44 -368413 sc-eQTL 6.65e-01 0.0771 0.178 0.05 NK_HLA L2
ENSG00000154027 AK5 999364 sc-eQTL 4.54e-04 0.663 0.186 0.05 NK_HLA L2
ENSG00000162613 FUBP1 302273 sc-eQTL 3.30e-01 -0.188 0.193 0.05 NK_HLA L2
ENSG00000162616 DNAJB4 302208 sc-eQTL 4.35e-02 -0.379 0.187 0.05 NK_HLA L2
ENSG00000180488 MIGA1 501759 sc-eQTL 4.79e-01 0.139 0.196 0.05 NK_HLA L2
ENSG00000036549 AC118549.1 597964 sc-eQTL 7.98e-01 0.071 0.277 0.056 PB L2
ENSG00000077254 USP33 521531 sc-eQTL 9.98e-02 -0.398 0.24 0.056 PB L2
ENSG00000137959 IFI44L -338539 sc-eQTL 1.81e-01 -0.282 0.21 0.056 PB L2
ENSG00000137965 IFI44 -368413 sc-eQTL 8.14e-01 -0.0447 0.19 0.056 PB L2
ENSG00000162613 FUBP1 302273 sc-eQTL 8.32e-01 0.0488 0.229 0.056 PB L2
ENSG00000162614 NEXN 392870 sc-eQTL 4.73e-01 0.15 0.209 0.056 PB L2
ENSG00000162616 DNAJB4 302208 sc-eQTL 5.72e-01 -0.129 0.227 0.056 PB L2
ENSG00000180488 MIGA1 501759 sc-eQTL 1.82e-01 -0.352 0.262 0.056 PB L2
ENSG00000273338 AC103591.3 276829 sc-eQTL 8.11e-01 0.0557 0.232 0.056 PB L2
ENSG00000036549 AC118549.1 597964 sc-eQTL 9.20e-01 0.0206 0.204 0.05 Pro_T L2
ENSG00000077254 USP33 521531 sc-eQTL 4.43e-01 -0.145 0.189 0.05 Pro_T L2
ENSG00000137959 IFI44L -338539 sc-eQTL 2.34e-02 -0.327 0.143 0.05 Pro_T L2
ENSG00000137965 IFI44 -368413 sc-eQTL 6.99e-01 -0.061 0.158 0.05 Pro_T L2
ENSG00000154027 AK5 999364 sc-eQTL 9.39e-01 0.0126 0.164 0.05 Pro_T L2
ENSG00000162613 FUBP1 302273 sc-eQTL 6.21e-01 0.0858 0.173 0.05 Pro_T L2
ENSG00000162616 DNAJB4 302208 sc-eQTL 7.17e-01 -0.0715 0.197 0.05 Pro_T L2
ENSG00000180488 MIGA1 501759 sc-eQTL 1.45e-01 -0.28 0.191 0.05 Pro_T L2
ENSG00000273338 AC103591.3 276829 sc-eQTL 5.92e-02 0.281 0.148 0.05 Pro_T L2
ENSG00000036549 AC118549.1 597964 sc-eQTL 7.85e-03 0.619 0.23 0.052 gdT L2
ENSG00000077254 USP33 521531 sc-eQTL 9.54e-01 0.0129 0.223 0.052 gdT L2
ENSG00000137959 IFI44L -338539 sc-eQTL 8.30e-01 0.0439 0.203 0.052 gdT L2
ENSG00000137965 IFI44 -368413 sc-eQTL 7.94e-01 0.0541 0.207 0.052 gdT L2
ENSG00000154027 AK5 999364 sc-eQTL 2.27e-01 0.215 0.177 0.052 gdT L2
ENSG00000162613 FUBP1 302273 sc-eQTL 2.21e-01 0.279 0.227 0.052 gdT L2
ENSG00000162616 DNAJB4 302208 sc-eQTL 5.39e-01 -0.135 0.219 0.052 gdT L2
ENSG00000180488 MIGA1 501759 sc-eQTL 9.36e-01 -0.0185 0.231 0.052 gdT L2
ENSG00000273338 AC103591.3 276829 sc-eQTL 9.16e-01 0.0214 0.202 0.052 gdT L2
ENSG00000036549 AC118549.1 597964 sc-eQTL 2.74e-01 0.232 0.211 0.051 intMono L2
ENSG00000077254 USP33 521531 sc-eQTL 6.90e-01 0.0703 0.176 0.051 intMono L2
ENSG00000137959 IFI44L -338539 sc-eQTL 9.73e-01 -0.00436 0.128 0.051 intMono L2
ENSG00000137965 IFI44 -368413 sc-eQTL 9.83e-01 0.00262 0.125 0.051 intMono L2
ENSG00000162613 FUBP1 302273 sc-eQTL 8.01e-01 -0.0487 0.193 0.051 intMono L2
ENSG00000162614 NEXN 392870 sc-eQTL 6.93e-01 -0.059 0.149 0.051 intMono L2
ENSG00000162616 DNAJB4 302208 sc-eQTL 5.37e-01 0.111 0.18 0.051 intMono L2
ENSG00000180488 MIGA1 501759 sc-eQTL 2.79e-01 0.214 0.197 0.051 intMono L2
ENSG00000273338 AC103591.3 276829 sc-eQTL 3.00e-01 -0.197 0.19 0.051 intMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000036549 AC118549.1 597964 eQTL 0.000114 0.0835 0.0216 0.00123 0.0 0.0613
ENSG00000077254 USP33 521531 eQTL 0.00271 -0.0629 0.0209 0.0 0.0 0.0613
ENSG00000137960 GIPC2 301841 pQTL 0.00495 0.118 0.0421 0.0 0.0 0.0625
ENSG00000154027 AK5 999364 eQTL 1.15e-05 0.165 0.0375 0.0 0.0 0.0613
ENSG00000162614 NEXN 392870 eQTL 0.01 0.0783 0.0303 0.00233 0.0 0.0613

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000036549 AC118549.1 597964 6.09e-07 3.12e-07 1.05e-07 2.57e-07 9.93e-08 1.54e-07 4.05e-07 1.03e-07 3.32e-07 2.01e-07 3.92e-07 3.08e-07 4.88e-07 9.48e-08 1.27e-07 1.92e-07 1.62e-07 3.3e-07 1.56e-07 8.41e-08 1.76e-07 2.86e-07 2.67e-07 1.03e-07 4.27e-07 2.42e-07 2.23e-07 1.85e-07 2.4e-07 2.59e-07 1.93e-07 6.58e-08 5.41e-08 1.16e-07 1.56e-07 6.73e-08 8.87e-08 6.67e-08 5.77e-08 7.89e-08 3.43e-08 2.72e-07 2.28e-08 1.08e-08 7.93e-08 1.3e-08 9.98e-08 2.8e-09 5.61e-08
ENSG00000154027 AK5 999364 2.8e-07 1.27e-07 5.64e-08 1.81e-07 9.79e-08 9.48e-08 1.6e-07 5.75e-08 1.5e-07 6.4e-08 1.57e-07 1.08e-07 1.59e-07 7.37e-08 6.18e-08 7.74e-08 4.24e-08 1.44e-07 6.75e-08 4.3e-08 1.26e-07 1.25e-07 1.44e-07 2.64e-08 1.55e-07 1.23e-07 1.18e-07 9.74e-08 1.23e-07 1.05e-07 1.02e-07 3.66e-08 3.89e-08 8.89e-08 6.34e-08 2.99e-08 5.59e-08 8.71e-08 6.86e-08 3.8e-08 5.43e-08 1.33e-07 5.2e-08 2.48e-08 4.92e-08 1.87e-08 1.21e-07 3.78e-09 5.01e-08