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Genes within 1Mb (chr1:78276091:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000036549 AC118549.1 592672 sc-eQTL 5.06e-02 0.403 0.205 0.051 CD8_TCM L2
ENSG00000077254 USP33 516239 sc-eQTL 2.84e-01 -0.223 0.207 0.051 CD8_TCM L2
ENSG00000137959 IFI44L -343831 sc-eQTL 8.61e-01 0.035 0.2 0.051 CD8_TCM L2
ENSG00000137965 IFI44 -373705 sc-eQTL 5.72e-01 -0.102 0.181 0.051 CD8_TCM L2
ENSG00000154027 AK5 994072 sc-eQTL 2.22e-01 0.249 0.203 0.051 CD8_TCM L2
ENSG00000162613 FUBP1 296981 sc-eQTL 1.11e-01 0.301 0.188 0.051 CD8_TCM L2
ENSG00000162616 DNAJB4 296916 sc-eQTL 9.63e-02 -0.345 0.206 0.051 CD8_TCM L2
ENSG00000180488 MIGA1 496467 sc-eQTL 5.98e-01 -0.112 0.212 0.051 CD8_TCM L2
ENSG00000273338 AC103591.3 271537 sc-eQTL 4.86e-01 -0.13 0.186 0.051 CD8_TCM L2
ENSG00000036549 AC118549.1 592672 sc-eQTL 8.65e-01 0.0352 0.207 0.05 NK_HLA L2
ENSG00000077254 USP33 516239 sc-eQTL 8.61e-01 -0.0355 0.203 0.05 NK_HLA L2
ENSG00000137959 IFI44L -343831 sc-eQTL 2.75e-01 -0.173 0.157 0.05 NK_HLA L2
ENSG00000137965 IFI44 -373705 sc-eQTL 6.65e-01 0.0771 0.178 0.05 NK_HLA L2
ENSG00000154027 AK5 994072 sc-eQTL 4.54e-04 0.663 0.186 0.05 NK_HLA L2
ENSG00000162613 FUBP1 296981 sc-eQTL 3.30e-01 -0.188 0.193 0.05 NK_HLA L2
ENSG00000162616 DNAJB4 296916 sc-eQTL 4.35e-02 -0.379 0.187 0.05 NK_HLA L2
ENSG00000180488 MIGA1 496467 sc-eQTL 4.79e-01 0.139 0.196 0.05 NK_HLA L2
ENSG00000036549 AC118549.1 592672 sc-eQTL 7.98e-01 0.071 0.277 0.056 PB L2
ENSG00000077254 USP33 516239 sc-eQTL 9.98e-02 -0.398 0.24 0.056 PB L2
ENSG00000137959 IFI44L -343831 sc-eQTL 1.81e-01 -0.282 0.21 0.056 PB L2
ENSG00000137965 IFI44 -373705 sc-eQTL 8.14e-01 -0.0447 0.19 0.056 PB L2
ENSG00000162613 FUBP1 296981 sc-eQTL 8.32e-01 0.0488 0.229 0.056 PB L2
ENSG00000162614 NEXN 387578 sc-eQTL 4.73e-01 0.15 0.209 0.056 PB L2
ENSG00000162616 DNAJB4 296916 sc-eQTL 5.72e-01 -0.129 0.227 0.056 PB L2
ENSG00000180488 MIGA1 496467 sc-eQTL 1.82e-01 -0.352 0.262 0.056 PB L2
ENSG00000273338 AC103591.3 271537 sc-eQTL 8.11e-01 0.0557 0.232 0.056 PB L2
ENSG00000036549 AC118549.1 592672 sc-eQTL 9.20e-01 0.0206 0.204 0.05 Pro_T L2
ENSG00000077254 USP33 516239 sc-eQTL 4.43e-01 -0.145 0.189 0.05 Pro_T L2
ENSG00000137959 IFI44L -343831 sc-eQTL 2.34e-02 -0.327 0.143 0.05 Pro_T L2
ENSG00000137965 IFI44 -373705 sc-eQTL 6.99e-01 -0.061 0.158 0.05 Pro_T L2
ENSG00000154027 AK5 994072 sc-eQTL 9.39e-01 0.0126 0.164 0.05 Pro_T L2
ENSG00000162613 FUBP1 296981 sc-eQTL 6.21e-01 0.0858 0.173 0.05 Pro_T L2
ENSG00000162616 DNAJB4 296916 sc-eQTL 7.17e-01 -0.0715 0.197 0.05 Pro_T L2
ENSG00000180488 MIGA1 496467 sc-eQTL 1.45e-01 -0.28 0.191 0.05 Pro_T L2
ENSG00000273338 AC103591.3 271537 sc-eQTL 5.92e-02 0.281 0.148 0.05 Pro_T L2
ENSG00000036549 AC118549.1 592672 sc-eQTL 7.85e-03 0.619 0.23 0.052 gdT L2
ENSG00000077254 USP33 516239 sc-eQTL 9.54e-01 0.0129 0.223 0.052 gdT L2
ENSG00000137959 IFI44L -343831 sc-eQTL 8.30e-01 0.0439 0.203 0.052 gdT L2
ENSG00000137965 IFI44 -373705 sc-eQTL 7.94e-01 0.0541 0.207 0.052 gdT L2
ENSG00000154027 AK5 994072 sc-eQTL 2.27e-01 0.215 0.177 0.052 gdT L2
ENSG00000162613 FUBP1 296981 sc-eQTL 2.21e-01 0.279 0.227 0.052 gdT L2
ENSG00000162616 DNAJB4 296916 sc-eQTL 5.39e-01 -0.135 0.219 0.052 gdT L2
ENSG00000180488 MIGA1 496467 sc-eQTL 9.36e-01 -0.0185 0.231 0.052 gdT L2
ENSG00000273338 AC103591.3 271537 sc-eQTL 9.16e-01 0.0214 0.202 0.052 gdT L2
ENSG00000036549 AC118549.1 592672 sc-eQTL 2.74e-01 0.232 0.211 0.051 intMono L2
ENSG00000077254 USP33 516239 sc-eQTL 6.90e-01 0.0703 0.176 0.051 intMono L2
ENSG00000137959 IFI44L -343831 sc-eQTL 9.73e-01 -0.00436 0.128 0.051 intMono L2
ENSG00000137965 IFI44 -373705 sc-eQTL 9.83e-01 0.00262 0.125 0.051 intMono L2
ENSG00000162613 FUBP1 296981 sc-eQTL 8.01e-01 -0.0487 0.193 0.051 intMono L2
ENSG00000162614 NEXN 387578 sc-eQTL 6.93e-01 -0.059 0.149 0.051 intMono L2
ENSG00000162616 DNAJB4 296916 sc-eQTL 5.37e-01 0.111 0.18 0.051 intMono L2
ENSG00000180488 MIGA1 496467 sc-eQTL 2.79e-01 0.214 0.197 0.051 intMono L2
ENSG00000273338 AC103591.3 271537 sc-eQTL 3.00e-01 -0.197 0.19 0.051 intMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000036549 AC118549.1 592672 eQTL 0.000135 0.0815 0.0213 0.00129 0.0 0.0633
ENSG00000077254 USP33 516239 eQTL 0.00342 -0.0605 0.0206 0.0 0.0 0.0633
ENSG00000137960 GIPC2 296549 pQTL 0.0156 0.101 0.0416 0.0 0.0 0.0643
ENSG00000154027 AK5 994072 eQTL 5.74e-06 0.168 0.0369 0.0 0.0 0.0633
ENSG00000162614 NEXN 387578 eQTL 0.0194 0.07 0.0299 0.0016 0.0 0.0633

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000036549 AC118549.1 592672 4.37e-07 2.3e-07 7.97e-08 2.31e-07 1.02e-07 8.75e-08 2.74e-07 5.62e-08 1.94e-07 1.21e-07 2.38e-07 1.59e-07 3.4e-07 8.15e-08 1.01e-07 9.35e-08 8.42e-08 2.43e-07 8.68e-08 6.03e-08 1.23e-07 2.09e-07 2e-07 4.17e-08 2.86e-07 1.39e-07 1.29e-07 1.44e-07 1.44e-07 1.89e-07 1.76e-07 4.43e-08 4.16e-08 9.58e-08 3.02e-08 3.18e-08 4.84e-08 8.25e-08 6.62e-08 5.35e-08 5.39e-08 1.62e-07 3.37e-08 1.13e-08 3.87e-08 6.83e-09 7e-08 2.07e-09 5.54e-08
ENSG00000154027 AK5 994072 2.69e-07 1.16e-07 4.47e-08 1.79e-07 8.92e-08 9.57e-08 1.38e-07 5.49e-08 1.4e-07 4.57e-08 1.62e-07 8.14e-08 1.41e-07 6.21e-08 6.17e-08 7.26e-08 3.94e-08 1.18e-07 5.36e-08 4.03e-08 1.04e-07 1.26e-07 1.32e-07 4.13e-08 1.32e-07 1.19e-07 1.11e-07 9.32e-08 1.05e-07 1.1e-07 9.64e-08 3.94e-08 3.26e-08 8.68e-08 9.24e-08 3.97e-08 4.84e-08 9.49e-08 7.63e-08 3.01e-08 4.45e-08 1.35e-07 4.89e-08 1.97e-08 6.92e-08 1.67e-08 1.22e-07 4.04e-09 5.02e-08