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Genes within 1Mb (chr1:77969107:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000036549 AC118549.1 285688 sc-eQTL 5.47e-01 -0.127 0.211 0.054 B_Activated L2
ENSG00000077254 USP33 209255 sc-eQTL 6.14e-01 0.105 0.208 0.054 B_Activated L2
ENSG00000137959 IFI44L -650815 sc-eQTL 7.77e-01 -0.0489 0.173 0.054 B_Activated L2
ENSG00000137965 IFI44 -680689 sc-eQTL 7.02e-01 -0.0668 0.174 0.054 B_Activated L2
ENSG00000142892 PIGK 749677 sc-eQTL 9.33e-01 -0.0167 0.198 0.054 B_Activated L2
ENSG00000162613 FUBP1 -10003 sc-eQTL 1.46e-01 0.293 0.2 0.054 B_Activated L2
ENSG00000162614 NEXN 80594 sc-eQTL 5.03e-02 0.319 0.162 0.054 B_Activated L2
ENSG00000162616 DNAJB4 -10068 sc-eQTL 2.47e-01 0.226 0.195 0.054 B_Activated L2
ENSG00000180488 MIGA1 189483 sc-eQTL 4.63e-01 0.155 0.211 0.054 B_Activated L2
ENSG00000273338 AC103591.3 -35447 sc-eQTL 4.90e-01 0.13 0.188 0.054 B_Activated L2
ENSG00000036549 AC118549.1 285688 sc-eQTL 5.08e-01 0.141 0.213 0.053 CD8_TEM L2
ENSG00000077254 USP33 209255 sc-eQTL 1.05e-01 -0.346 0.213 0.053 CD8_TEM L2
ENSG00000137959 IFI44L -650815 sc-eQTL 7.31e-01 0.0543 0.157 0.053 CD8_TEM L2
ENSG00000137965 IFI44 -680689 sc-eQTL 4.12e-01 -0.134 0.163 0.053 CD8_TEM L2
ENSG00000142892 PIGK 749677 sc-eQTL 7.69e-01 0.0597 0.203 0.053 CD8_TEM L2
ENSG00000154027 AK5 687088 sc-eQTL 1.36e-01 0.215 0.143 0.053 CD8_TEM L2
ENSG00000162613 FUBP1 -10003 sc-eQTL 3.18e-01 0.196 0.196 0.053 CD8_TEM L2
ENSG00000162616 DNAJB4 -10068 sc-eQTL 5.75e-01 0.111 0.198 0.053 CD8_TEM L2
ENSG00000180488 MIGA1 189483 sc-eQTL 5.46e-01 0.127 0.21 0.053 CD8_TEM L2
ENSG00000273338 AC103591.3 -35447 sc-eQTL 3.62e-01 -0.157 0.171 0.053 CD8_TEM L2
ENSG00000036549 AC118549.1 285688 sc-eQTL 4.45e-01 -0.159 0.208 0.05 NK_HLA L2
ENSG00000077254 USP33 209255 sc-eQTL 1.46e-01 0.298 0.204 0.05 NK_HLA L2
ENSG00000137959 IFI44L -650815 sc-eQTL 7.91e-01 0.0422 0.159 0.05 NK_HLA L2
ENSG00000137965 IFI44 -680689 sc-eQTL 8.81e-01 0.0269 0.179 0.05 NK_HLA L2
ENSG00000142892 PIGK 749677 sc-eQTL 2.64e-01 -0.238 0.213 0.05 NK_HLA L2
ENSG00000154027 AK5 687088 sc-eQTL 1.29e-02 -0.478 0.19 0.05 NK_HLA L2
ENSG00000162613 FUBP1 -10003 sc-eQTL 2.85e-01 -0.208 0.194 0.05 NK_HLA L2
ENSG00000162616 DNAJB4 -10068 sc-eQTL 9.69e-01 0.00732 0.19 0.05 NK_HLA L2
ENSG00000180488 MIGA1 189483 sc-eQTL 1.72e-01 -0.27 0.197 0.05 NK_HLA L2
ENSG00000036549 AC118549.1 285688 sc-eQTL 9.63e-01 -0.0118 0.254 0.059 PB L2
ENSG00000077254 USP33 209255 sc-eQTL 6.53e-01 -0.101 0.223 0.059 PB L2
ENSG00000137959 IFI44L -650815 sc-eQTL 7.18e-02 0.348 0.192 0.059 PB L2
ENSG00000137965 IFI44 -680689 sc-eQTL 1.63e-01 0.243 0.173 0.059 PB L2
ENSG00000142892 PIGK 749677 sc-eQTL 5.12e-01 -0.0837 0.127 0.059 PB L2
ENSG00000162613 FUBP1 -10003 sc-eQTL 6.22e-01 0.104 0.211 0.059 PB L2
ENSG00000162614 NEXN 80594 sc-eQTL 2.73e-02 0.421 0.188 0.059 PB L2
ENSG00000162616 DNAJB4 -10068 sc-eQTL 9.47e-01 0.014 0.209 0.059 PB L2
ENSG00000180488 MIGA1 189483 sc-eQTL 2.08e-01 -0.306 0.241 0.059 PB L2
ENSG00000273338 AC103591.3 -35447 sc-eQTL 1.78e-01 0.287 0.212 0.059 PB L2
ENSG00000036549 AC118549.1 285688 sc-eQTL 6.56e-01 -0.0983 0.22 0.051 cDC L2
ENSG00000077254 USP33 209255 sc-eQTL 3.84e-01 -0.165 0.189 0.051 cDC L2
ENSG00000137959 IFI44L -650815 sc-eQTL 2.62e-01 0.16 0.142 0.051 cDC L2
ENSG00000137965 IFI44 -680689 sc-eQTL 5.89e-01 0.078 0.144 0.051 cDC L2
ENSG00000142892 PIGK 749677 sc-eQTL 4.90e-01 0.14 0.203 0.051 cDC L2
ENSG00000154027 AK5 687088 sc-eQTL 4.90e-01 -0.115 0.166 0.051 cDC L2
ENSG00000162613 FUBP1 -10003 sc-eQTL 8.24e-01 0.0439 0.197 0.051 cDC L2
ENSG00000162614 NEXN 80594 sc-eQTL 2.81e-01 0.172 0.159 0.051 cDC L2
ENSG00000162616 DNAJB4 -10068 sc-eQTL 5.86e-02 -0.375 0.197 0.051 cDC L2
ENSG00000180488 MIGA1 189483 sc-eQTL 1.82e-02 0.515 0.216 0.051 cDC L2
ENSG00000273338 AC103591.3 -35447 sc-eQTL 5.72e-02 -0.381 0.199 0.051 cDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000137960 GIPC2 -10435 pQTL 0.000804 -0.159 0.0475 0.0 0.0 0.0484
ENSG00000154027 AK5 687088 eQTL 0.000889 -0.144 0.0433 0.0 0.0 0.0471
ENSG00000162616 DNAJB4 -10068 eQTL 0.000612 -0.161 0.0467 0.0 0.0 0.0471
ENSG00000235613 NSRP1P1 121997 eQTL 0.0498 0.105 0.0534 0.0 0.0 0.0471
ENSG00000235927 NEXN-AS1 79568 eQTL 1.4e-05 -0.217 0.0498 0.0 0.0 0.0471

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000142892 \N 749677 2.91e-07 1.33e-07 5.82e-08 2.27e-07 9.21e-08 9.9e-08 2.1e-07 5.4e-08 1.45e-07 8.53e-08 1.63e-07 1.22e-07 2.94e-07 8.13e-08 9.33e-08 7.23e-08 4.17e-08 1.8e-07 6.92e-08 4.78e-08 1.18e-07 1.26e-07 1.58e-07 2.79e-08 2.09e-07 1.14e-07 1.18e-07 9.74e-08 1.2e-07 1.06e-07 1.22e-07 3.08e-08 3.21e-08 9.08e-08 3.46e-08 6.83e-08 5.45e-08 9.62e-08 6.71e-08 6.43e-08 3.82e-08 2.6e-07 3.35e-08 1.23e-08 3.07e-08 6.83e-09 1.21e-07 2.05e-09 4.61e-08
ENSG00000162616 DNAJB4 -10068 3.39e-05 3.22e-05 6.07e-06 1.5e-05 5.44e-06 1.36e-05 4.33e-05 3.95e-06 2.93e-05 1.44e-05 3.66e-05 1.67e-05 4.46e-05 1.38e-05 6.68e-06 1.81e-05 1.69e-05 2.42e-05 7.46e-06 6.5e-06 1.45e-05 3.08e-05 3.11e-05 8.53e-06 4.3e-05 7.92e-06 1.33e-05 1.24e-05 3.05e-05 2.53e-05 1.87e-05 1.59e-06 2.53e-06 6.69e-06 1.1e-05 5.61e-06 3.1e-06 3.18e-06 4.48e-06 3.08e-06 1.77e-06 3.61e-05 3.64e-06 3.24e-07 2.49e-06 3.59e-06 3.96e-06 1.55e-06 1.53e-06