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Genes within 1Mb (chr1:77056867:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000036549 AC118549.1 -626552 sc-eQTL 6.24e-01 0.102 0.207 0.054 B_Activated L2
ENSG00000077254 USP33 -702985 sc-eQTL 6.34e-01 -0.0975 0.204 0.054 B_Activated L2
ENSG00000142892 PIGK -162563 sc-eQTL 5.36e-01 0.121 0.194 0.054 B_Activated L2
ENSG00000162613 FUBP1 -922243 sc-eQTL 8.47e-01 -0.0382 0.198 0.054 B_Activated L2
ENSG00000162614 NEXN -831646 sc-eQTL 2.96e-01 0.168 0.16 0.054 B_Activated L2
ENSG00000162616 DNAJB4 -922308 sc-eQTL 1.00e+00 -7.18e-06 0.192 0.054 B_Activated L2
ENSG00000180488 MIGA1 -722757 sc-eQTL 8.98e-01 -0.0264 0.207 0.054 B_Activated L2
ENSG00000184005 ST6GALNAC3 982121 sc-eQTL 1.58e-01 0.242 0.17 0.054 B_Activated L2
ENSG00000273338 AC103591.3 -947687 sc-eQTL 8.17e-01 -0.0427 0.184 0.054 B_Activated L2
ENSG00000036549 AC118549.1 -626552 sc-eQTL 6.48e-01 0.0942 0.206 0.05 CD8_TEM L2
ENSG00000077254 USP33 -702985 sc-eQTL 3.48e-01 0.194 0.207 0.05 CD8_TEM L2
ENSG00000142892 PIGK -162563 sc-eQTL 5.33e-01 -0.123 0.197 0.05 CD8_TEM L2
ENSG00000154027 AK5 -225152 sc-eQTL 6.46e-01 0.0642 0.14 0.05 CD8_TEM L2
ENSG00000162613 FUBP1 -922243 sc-eQTL 6.87e-01 -0.0769 0.19 0.05 CD8_TEM L2
ENSG00000162616 DNAJB4 -922308 sc-eQTL 6.20e-01 0.0952 0.192 0.05 CD8_TEM L2
ENSG00000180488 MIGA1 -722757 sc-eQTL 6.69e-01 -0.0872 0.204 0.05 CD8_TEM L2
ENSG00000184005 ST6GALNAC3 982121 sc-eQTL 8.65e-01 0.024 0.141 0.05 CD8_TEM L2
ENSG00000273338 AC103591.3 -947687 sc-eQTL 3.42e-01 -0.158 0.166 0.05 CD8_TEM L2
ENSG00000036549 AC118549.1 -626552 sc-eQTL 6.58e-02 -0.43 0.232 0.056 PB L2
ENSG00000077254 USP33 -702985 sc-eQTL 6.84e-01 0.0841 0.206 0.056 PB L2
ENSG00000142892 PIGK -162563 sc-eQTL 5.56e-01 -0.0695 0.118 0.056 PB L2
ENSG00000162613 FUBP1 -922243 sc-eQTL 1.44e-01 -0.284 0.193 0.056 PB L2
ENSG00000162614 NEXN -831646 sc-eQTL 5.50e-01 -0.106 0.177 0.056 PB L2
ENSG00000162616 DNAJB4 -922308 sc-eQTL 9.92e-01 0.00193 0.193 0.056 PB L2
ENSG00000180488 MIGA1 -722757 sc-eQTL 8.51e-01 -0.0422 0.224 0.056 PB L2
ENSG00000184005 ST6GALNAC3 982121 sc-eQTL 7.50e-01 -0.0517 0.162 0.056 PB L2
ENSG00000273338 AC103591.3 -947687 sc-eQTL 8.49e-01 -0.0375 0.197 0.056 PB L2
ENSG00000036549 AC118549.1 -626552 sc-eQTL 1.71e-02 -0.576 0.239 0.052 gdT L2
ENSG00000077254 USP33 -702985 sc-eQTL 9.28e-02 0.385 0.228 0.052 gdT L2
ENSG00000142892 PIGK -162563 sc-eQTL 7.85e-01 -0.0671 0.245 0.052 gdT L2
ENSG00000154027 AK5 -225152 sc-eQTL 5.11e-01 -0.121 0.184 0.052 gdT L2
ENSG00000162613 FUBP1 -922243 sc-eQTL 7.27e-01 -0.0824 0.236 0.052 gdT L2
ENSG00000162616 DNAJB4 -922308 sc-eQTL 9.91e-01 0.00262 0.226 0.052 gdT L2
ENSG00000180488 MIGA1 -722757 sc-eQTL 4.86e-01 -0.167 0.239 0.052 gdT L2
ENSG00000273338 AC103591.3 -947687 sc-eQTL 4.33e-02 0.419 0.205 0.052 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000235927 NEXN-AS1 -832672 eQTL 0.000577 -0.182 0.0526 0.00117 0.0 0.0481

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000235927 NEXN-AS1 -832672 4.68e-07 3.11e-07 6.86e-08 2.62e-07 1.08e-07 1.25e-07 2.95e-07 6.72e-08 1.94e-07 1.11e-07 2.68e-07 1.59e-07 3.95e-07 8.26e-08 8.45e-08 9.6e-08 9.3e-08 2.56e-07 7.76e-08 8.52e-08 1.34e-07 2.3e-07 1.86e-07 3.51e-08 3.14e-07 1.43e-07 1.33e-07 1.44e-07 1.4e-07 1.69e-07 1.71e-07 5.32e-08 3.56e-08 1.02e-07 6.98e-08 3.24e-08 6.67e-08 7.63e-08 6.49e-08 5.96e-08 5.42e-08 2.72e-07 3.19e-08 1.43e-08 3.3e-08 9.44e-09 7.26e-08 2.16e-09 4.81e-08