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Genes within 1Mb (chr1:74682946:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116791 CRYZ -50462 sc-eQTL 2.45e-02 -0.137 0.0605 0.65 B L1
ENSG00000162623 TYW3 -50206 sc-eQTL 4.87e-03 -0.241 0.0846 0.65 B L1
ENSG00000254685 FPGT 484734 sc-eQTL 3.84e-03 -0.252 0.0863 0.65 B L1
ENSG00000116791 CRYZ -50462 sc-eQTL 2.30e-01 -0.0774 0.0643 0.65 CD4T L1
ENSG00000162623 TYW3 -50206 sc-eQTL 1.31e-01 -0.116 0.0766 0.65 CD4T L1
ENSG00000254685 FPGT 484734 sc-eQTL 4.50e-01 0.0579 0.0764 0.65 CD4T L1
ENSG00000116791 CRYZ -50462 sc-eQTL 1.91e-02 -0.156 0.0662 0.65 CD8T L1
ENSG00000162623 TYW3 -50206 sc-eQTL 6.68e-01 0.0355 0.0824 0.65 CD8T L1
ENSG00000254685 FPGT 484734 sc-eQTL 4.96e-01 -0.0618 0.0907 0.65 CD8T L1
ENSG00000116791 CRYZ -50462 sc-eQTL 2.91e-01 -0.0981 0.0926 0.649 DC L1
ENSG00000162623 TYW3 -50206 sc-eQTL 8.81e-01 -0.0138 0.0918 0.649 DC L1
ENSG00000254685 FPGT 484734 sc-eQTL 6.94e-01 -0.0371 0.0942 0.649 DC L1
ENSG00000116791 CRYZ -50462 sc-eQTL 2.11e-02 -0.228 0.098 0.65 Mono L1
ENSG00000162623 TYW3 -50206 sc-eQTL 2.11e-01 -0.112 0.0895 0.65 Mono L1
ENSG00000254685 FPGT 484734 sc-eQTL 8.74e-01 -0.0121 0.0763 0.65 Mono L1
ENSG00000116791 CRYZ -50462 sc-eQTL 1.69e-01 -0.0983 0.0712 0.652 NK L1
ENSG00000162623 TYW3 -50206 sc-eQTL 7.39e-01 0.0285 0.0853 0.652 NK L1
ENSG00000254685 FPGT 484734 sc-eQTL 5.18e-01 -0.0556 0.086 0.652 NK L1
ENSG00000116791 CRYZ -50462 sc-eQTL 4.74e-02 -0.167 0.0837 0.65 Other_T L1
ENSG00000162623 TYW3 -50206 sc-eQTL 1.10e-01 -0.12 0.0749 0.65 Other_T L1
ENSG00000254685 FPGT 484734 sc-eQTL 4.82e-01 -0.0647 0.092 0.65 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116791 CRYZ -50462 sc-eQTL 5.45e-01 -0.0636 0.105 0.643 B_Activated L2
ENSG00000162623 TYW3 -50206 sc-eQTL 2.92e-01 0.117 0.111 0.643 B_Activated L2
ENSG00000254685 FPGT 484734 sc-eQTL 7.16e-01 0.0365 0.1 0.643 B_Activated L2
ENSG00000116791 CRYZ -50462 sc-eQTL 8.55e-01 0.0138 0.0756 0.648 B_Intermediate L2
ENSG00000162623 TYW3 -50206 sc-eQTL 5.93e-01 -0.0534 0.0999 0.648 B_Intermediate L2
ENSG00000254685 FPGT 484734 sc-eQTL 6.12e-02 -0.174 0.0924 0.648 B_Intermediate L2
ENSG00000116791 CRYZ -50462 sc-eQTL 3.91e-01 -0.0702 0.0817 0.651 B_Memory L2
ENSG00000162623 TYW3 -50206 sc-eQTL 5.49e-02 -0.186 0.0961 0.651 B_Memory L2
ENSG00000254685 FPGT 484734 sc-eQTL 1.17e-01 -0.153 0.0975 0.651 B_Memory L2
ENSG00000116791 CRYZ -50462 sc-eQTL 3.20e-01 -0.0804 0.0806 0.65 B_Naive1 L2
ENSG00000162623 TYW3 -50206 sc-eQTL 2.32e-01 -0.118 0.0987 0.65 B_Naive1 L2
ENSG00000254685 FPGT 484734 sc-eQTL 1.31e-02 -0.228 0.0911 0.65 B_Naive1 L2
ENSG00000116791 CRYZ -50462 sc-eQTL 1.72e-02 -0.195 0.0812 0.65 B_Naive2 L2
ENSG00000162623 TYW3 -50206 sc-eQTL 5.60e-02 -0.188 0.0976 0.65 B_Naive2 L2
ENSG00000254685 FPGT 484734 sc-eQTL 1.08e-01 -0.152 0.0942 0.65 B_Naive2 L2
ENSG00000116791 CRYZ -50462 sc-eQTL 7.84e-01 -0.0265 0.0965 0.643 CD4_CTL L2
ENSG00000162623 TYW3 -50206 sc-eQTL 2.04e-01 -0.129 0.101 0.643 CD4_CTL L2
ENSG00000254685 FPGT 484734 sc-eQTL 3.43e-01 -0.0838 0.0882 0.643 CD4_CTL L2
ENSG00000116791 CRYZ -50462 sc-eQTL 2.26e-01 -0.0882 0.0726 0.65 CD4_Naive L2
ENSG00000162623 TYW3 -50206 sc-eQTL 4.01e-01 -0.0736 0.0874 0.65 CD4_Naive L2
ENSG00000254685 FPGT 484734 sc-eQTL 5.81e-01 0.0471 0.0851 0.65 CD4_Naive L2
ENSG00000116791 CRYZ -50462 sc-eQTL 2.37e-01 -0.0852 0.0718 0.65 CD4_TCM L2
ENSG00000162623 TYW3 -50206 sc-eQTL 6.58e-02 -0.167 0.0903 0.65 CD4_TCM L2
ENSG00000254685 FPGT 484734 sc-eQTL 3.66e-01 0.0834 0.0921 0.65 CD4_TCM L2
ENSG00000116791 CRYZ -50462 sc-eQTL 7.97e-01 -0.0219 0.0847 0.65 CD4_TEM L2
ENSG00000162623 TYW3 -50206 sc-eQTL 6.80e-02 -0.178 0.0968 0.65 CD4_TEM L2
ENSG00000254685 FPGT 484734 sc-eQTL 2.08e-01 -0.116 0.0919 0.65 CD4_TEM L2
ENSG00000116791 CRYZ -50462 sc-eQTL 1.04e-01 -0.129 0.0789 0.65 CD8_CTL L2
ENSG00000162623 TYW3 -50206 sc-eQTL 9.98e-01 0.000269 0.0971 0.65 CD8_CTL L2
ENSG00000254685 FPGT 484734 sc-eQTL 6.99e-01 -0.0356 0.092 0.65 CD8_CTL L2
ENSG00000116791 CRYZ -50462 sc-eQTL 3.02e-02 -0.167 0.0767 0.65 CD8_Naive L2
ENSG00000162623 TYW3 -50206 sc-eQTL 6.23e-01 0.0429 0.0871 0.65 CD8_Naive L2
ENSG00000254685 FPGT 484734 sc-eQTL 5.39e-01 -0.0562 0.0914 0.65 CD8_Naive L2
ENSG00000116791 CRYZ -50462 sc-eQTL 7.08e-01 0.0336 0.0895 0.646 CD8_TCM L2
ENSG00000162623 TYW3 -50206 sc-eQTL 7.97e-01 0.0267 0.103 0.646 CD8_TCM L2
ENSG00000254685 FPGT 484734 sc-eQTL 5.33e-01 -0.0582 0.0931 0.646 CD8_TCM L2
ENSG00000116791 CRYZ -50462 sc-eQTL 6.91e-01 -0.0375 0.0944 0.639 CD8_TEM L2
ENSG00000162623 TYW3 -50206 sc-eQTL 6.89e-01 -0.0387 0.0966 0.639 CD8_TEM L2
ENSG00000254685 FPGT 484734 sc-eQTL 3.25e-01 -0.0861 0.0872 0.639 CD8_TEM L2
ENSG00000116791 CRYZ -50462 sc-eQTL 1.52e-01 -0.123 0.0854 0.647 MAIT L2
ENSG00000162623 TYW3 -50206 sc-eQTL 5.36e-01 -0.0631 0.102 0.647 MAIT L2
ENSG00000254685 FPGT 484734 sc-eQTL 5.18e-01 -0.0566 0.0875 0.647 MAIT L2
ENSG00000116791 CRYZ -50462 sc-eQTL 1.32e-01 -0.14 0.0926 0.656 NK_CD56bright L2
ENSG00000162623 TYW3 -50206 sc-eQTL 2.13e-01 -0.125 0.0999 0.656 NK_CD56bright L2
ENSG00000254685 FPGT 484734 sc-eQTL 5.05e-01 0.0585 0.0876 0.656 NK_CD56bright L2
ENSG00000116791 CRYZ -50462 sc-eQTL 3.20e-01 -0.0806 0.0809 0.653 NK_CD56dim L2
ENSG00000162623 TYW3 -50206 sc-eQTL 5.01e-01 0.0617 0.0915 0.653 NK_CD56dim L2
ENSG00000254685 FPGT 484734 sc-eQTL 8.69e-01 -0.0156 0.0942 0.653 NK_CD56dim L2
ENSG00000116791 CRYZ -50462 sc-eQTL 6.48e-02 -0.18 0.0967 0.648 NK_HLA L2
ENSG00000162623 TYW3 -50206 sc-eQTL 8.04e-01 -0.025 0.101 0.648 NK_HLA L2
ENSG00000254685 FPGT 484734 sc-eQTL 6.36e-01 0.0463 0.0977 0.648 NK_HLA L2
ENSG00000116791 CRYZ -50462 sc-eQTL 6.39e-01 -0.0394 0.0838 0.653 NK_cytokine L2
ENSG00000162623 TYW3 -50206 sc-eQTL 9.06e-01 -0.0108 0.0914 0.653 NK_cytokine L2
ENSG00000254685 FPGT 484734 sc-eQTL 1.14e-01 -0.142 0.0892 0.653 NK_cytokine L2
ENSG00000116791 CRYZ -50462 sc-eQTL 2.41e-01 -0.14 0.119 0.663 PB L2
ENSG00000162623 TYW3 -50206 sc-eQTL 4.38e-01 -0.0897 0.115 0.663 PB L2
ENSG00000254685 FPGT 484734 sc-eQTL 4.99e-01 0.0774 0.114 0.663 PB L2
ENSG00000116791 CRYZ -50462 sc-eQTL 5.24e-01 -0.0632 0.0991 0.65 Pro_T L2
ENSG00000162623 TYW3 -50206 sc-eQTL 5.07e-01 -0.0516 0.0776 0.65 Pro_T L2
ENSG00000254685 FPGT 484734 sc-eQTL 3.51e-01 -0.0828 0.0886 0.65 Pro_T L2
ENSG00000116791 CRYZ -50462 sc-eQTL 2.78e-01 -0.0987 0.0908 0.65 Treg L2
ENSG00000162623 TYW3 -50206 sc-eQTL 9.33e-01 0.0078 0.0925 0.65 Treg L2
ENSG00000254685 FPGT 484734 sc-eQTL 3.18e-01 0.0903 0.0902 0.65 Treg L2
ENSG00000116791 CRYZ -50462 sc-eQTL 1.30e-01 -0.145 0.0953 0.641 cDC L2
ENSG00000162623 TYW3 -50206 sc-eQTL 7.95e-01 -0.0251 0.0962 0.641 cDC L2
ENSG00000254685 FPGT 484734 sc-eQTL 7.11e-01 -0.0367 0.0988 0.641 cDC L2
ENSG00000116791 CRYZ -50462 sc-eQTL 3.36e-02 -0.207 0.0969 0.65 cMono_IL1B L2
ENSG00000162623 TYW3 -50206 sc-eQTL 6.80e-02 -0.17 0.0926 0.65 cMono_IL1B L2
ENSG00000254685 FPGT 484734 sc-eQTL 4.87e-01 -0.0615 0.0884 0.65 cMono_IL1B L2
ENSG00000116791 CRYZ -50462 sc-eQTL 4.27e-01 -0.0765 0.0961 0.65 cMono_S100A L2
ENSG00000162623 TYW3 -50206 sc-eQTL 4.09e-01 0.0811 0.098 0.65 cMono_S100A L2
ENSG00000254685 FPGT 484734 sc-eQTL 4.51e-01 0.0661 0.0876 0.65 cMono_S100A L2
ENSG00000116791 CRYZ -50462 sc-eQTL 2.35e-01 -0.121 0.101 0.624 gdT L2
ENSG00000162623 TYW3 -50206 sc-eQTL 2.67e-01 -0.121 0.109 0.624 gdT L2
ENSG00000254685 FPGT 484734 sc-eQTL 8.35e-01 -0.0215 0.103 0.624 gdT L2
ENSG00000116791 CRYZ -50462 sc-eQTL 1.29e-01 -0.141 0.0924 0.649 intMono L2
ENSG00000162623 TYW3 -50206 sc-eQTL 2.02e-01 -0.129 0.101 0.649 intMono L2
ENSG00000254685 FPGT 484734 sc-eQTL 8.59e-01 -0.0167 0.0939 0.649 intMono L2
ENSG00000116791 CRYZ -50462 sc-eQTL 3.99e-03 -0.27 0.0927 0.643 ncMono L2
ENSG00000162623 TYW3 -50206 sc-eQTL 1.20e-02 -0.264 0.104 0.643 ncMono L2
ENSG00000254685 FPGT 484734 sc-eQTL 8.29e-01 0.0196 0.0907 0.643 ncMono L2
ENSG00000116791 CRYZ -50462 sc-eQTL 7.66e-01 0.0328 0.11 0.644 pDC L2
ENSG00000162623 TYW3 -50206 sc-eQTL 2.93e-02 -0.235 0.107 0.644 pDC L2
ENSG00000254685 FPGT 484734 sc-eQTL 4.24e-01 0.0805 0.101 0.644 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116791 CRYZ -50462 sc-eQTL 2.86e-01 -0.0731 0.0683 0.65 B_Memory LOneK1K
ENSG00000162623 TYW3 -50206 sc-eQTL 3.13e-01 -0.0996 0.0985 0.65 B_Memory LOneK1K
ENSG00000254685 FPGT 484734 sc-eQTL 5.91e-02 -0.181 0.0954 0.65 B_Memory LOneK1K
ENSG00000116791 CRYZ -50462 sc-eQTL 1.36e-02 -0.18 0.0725 0.65 B_Naive LOneK1K
ENSG00000162623 TYW3 -50206 sc-eQTL 1.13e-02 -0.243 0.095 0.65 B_Naive LOneK1K
ENSG00000254685 FPGT 484734 sc-eQTL 1.11e-02 -0.235 0.0916 0.65 B_Naive LOneK1K
ENSG00000116791 CRYZ -50462 sc-eQTL 9.46e-02 -0.166 0.099 0.65 CD14_Mono LOneK1K
ENSG00000162623 TYW3 -50206 sc-eQTL 3.52e-01 -0.0844 0.0905 0.65 CD14_Mono LOneK1K
ENSG00000254685 FPGT 484734 sc-eQTL 8.39e-01 -0.0167 0.0823 0.65 CD14_Mono LOneK1K
ENSG00000116791 CRYZ -50462 sc-eQTL 5.02e-03 -0.269 0.0948 0.651 CD16_Mono LOneK1K
ENSG00000162623 TYW3 -50206 sc-eQTL 8.52e-02 -0.169 0.0975 0.651 CD16_Mono LOneK1K
ENSG00000254685 FPGT 484734 sc-eQTL 8.66e-01 -0.0153 0.0906 0.651 CD16_Mono LOneK1K
ENSG00000116791 CRYZ -50462 sc-eQTL 2.37e-01 -0.0871 0.0734 0.653 NK_CD56dim LOneK1K
ENSG00000162623 TYW3 -50206 sc-eQTL 6.11e-01 0.0441 0.0866 0.653 NK_CD56dim LOneK1K
ENSG00000254685 FPGT 484734 sc-eQTL 3.94e-01 -0.0775 0.0908 0.653 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116791 CRYZ -50462 eQTL 4.51e-08 -0.12 0.0218 0.0 0.0 0.371
ENSG00000162623 TYW3 -50206 eQTL 0.000287 -0.0519 0.0143 0.0 0.0 0.371

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116791 CRYZ -50462 9.27e-06 9.98e-06 1.79e-06 6.04e-06 2.32e-06 4.26e-06 1.14e-05 2.12e-06 9.72e-06 5.51e-06 1.23e-05 5.64e-06 1.56e-05 3.66e-06 3.01e-06 6.6e-06 4.93e-06 8.1e-06 3.05e-06 3.04e-06 6.03e-06 1.01e-05 8.93e-06 3.58e-06 1.48e-05 4.36e-06 5.47e-06 4.58e-06 1.15e-05 9.92e-06 5.51e-06 9.76e-07 1.22e-06 3.57e-06 4.71e-06 2.85e-06 1.79e-06 1.95e-06 2.06e-06 1.15e-06 1.14e-06 1.28e-05 1.49e-06 2.27e-07 9.15e-07 1.75e-06 1.75e-06 6.58e-07 4.9e-07