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Genes within 1Mb (chr1:74306648:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116791 CRYZ -426760 sc-eQTL 5.52e-01 0.0476 0.0799 0.872 B L1
ENSG00000162623 TYW3 -426504 sc-eQTL 2.45e-01 0.131 0.112 0.872 B L1
ENSG00000254685 FPGT 108436 sc-eQTL 7.72e-01 -0.0334 0.115 0.872 B L1
ENSG00000116791 CRYZ -426760 sc-eQTL 7.97e-01 -0.0214 0.0833 0.872 CD4T L1
ENSG00000162623 TYW3 -426504 sc-eQTL 6.85e-02 -0.181 0.0987 0.872 CD4T L1
ENSG00000254685 FPGT 108436 sc-eQTL 1.40e-01 -0.146 0.0984 0.872 CD4T L1
ENSG00000116791 CRYZ -426760 sc-eQTL 6.17e-01 0.0432 0.0863 0.872 CD8T L1
ENSG00000162623 TYW3 -426504 sc-eQTL 9.91e-01 -0.00122 0.106 0.872 CD8T L1
ENSG00000254685 FPGT 108436 sc-eQTL 9.45e-01 0.00802 0.117 0.872 CD8T L1
ENSG00000116791 CRYZ -426760 sc-eQTL 3.60e-01 0.112 0.121 0.874 DC L1
ENSG00000162623 TYW3 -426504 sc-eQTL 1.27e-02 0.298 0.119 0.874 DC L1
ENSG00000254685 FPGT 108436 sc-eQTL 8.33e-01 0.026 0.123 0.874 DC L1
ENSG00000116791 CRYZ -426760 sc-eQTL 4.83e-01 0.0902 0.128 0.872 Mono L1
ENSG00000162623 TYW3 -426504 sc-eQTL 1.29e-01 0.176 0.116 0.872 Mono L1
ENSG00000254685 FPGT 108436 sc-eQTL 9.55e-03 -0.255 0.0973 0.872 Mono L1
ENSG00000116791 CRYZ -426760 sc-eQTL 2.72e-01 -0.0997 0.0905 0.871 NK L1
ENSG00000162623 TYW3 -426504 sc-eQTL 9.18e-02 0.182 0.108 0.871 NK L1
ENSG00000254685 FPGT 108436 sc-eQTL 6.10e-01 0.0558 0.109 0.871 NK L1
ENSG00000116791 CRYZ -426760 sc-eQTL 6.65e-01 0.0483 0.111 0.872 Other_T L1
ENSG00000162623 TYW3 -426504 sc-eQTL 8.85e-01 0.0144 0.0992 0.872 Other_T L1
ENSG00000254685 FPGT 108436 sc-eQTL 2.62e-02 0.268 0.12 0.872 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116791 CRYZ -426760 sc-eQTL 4.73e-01 0.0939 0.131 0.875 B_Activated L2
ENSG00000162623 TYW3 -426504 sc-eQTL 5.43e-01 -0.0842 0.138 0.875 B_Activated L2
ENSG00000254685 FPGT 108436 sc-eQTL 9.00e-01 -0.0157 0.125 0.875 B_Activated L2
ENSG00000116791 CRYZ -426760 sc-eQTL 7.58e-01 0.0298 0.0964 0.871 B_Intermediate L2
ENSG00000162623 TYW3 -426504 sc-eQTL 3.47e-01 0.12 0.127 0.871 B_Intermediate L2
ENSG00000254685 FPGT 108436 sc-eQTL 3.58e-01 -0.109 0.119 0.871 B_Intermediate L2
ENSG00000116791 CRYZ -426760 sc-eQTL 4.41e-01 0.0798 0.103 0.871 B_Memory L2
ENSG00000162623 TYW3 -426504 sc-eQTL 5.51e-01 0.0733 0.123 0.871 B_Memory L2
ENSG00000254685 FPGT 108436 sc-eQTL 6.04e-01 -0.0643 0.124 0.871 B_Memory L2
ENSG00000116791 CRYZ -426760 sc-eQTL 2.86e-01 0.113 0.105 0.872 B_Naive1 L2
ENSG00000162623 TYW3 -426504 sc-eQTL 7.93e-01 -0.034 0.129 0.872 B_Naive1 L2
ENSG00000254685 FPGT 108436 sc-eQTL 7.18e-01 0.0436 0.121 0.872 B_Naive1 L2
ENSG00000116791 CRYZ -426760 sc-eQTL 7.54e-01 0.0329 0.105 0.871 B_Naive2 L2
ENSG00000162623 TYW3 -426504 sc-eQTL 1.13e-02 0.316 0.124 0.871 B_Naive2 L2
ENSG00000254685 FPGT 108436 sc-eQTL 6.43e-01 0.0561 0.121 0.871 B_Naive2 L2
ENSG00000116791 CRYZ -426760 sc-eQTL 9.22e-01 -0.0123 0.125 0.873 CD4_CTL L2
ENSG00000162623 TYW3 -426504 sc-eQTL 9.55e-01 0.00745 0.132 0.873 CD4_CTL L2
ENSG00000254685 FPGT 108436 sc-eQTL 2.56e-01 -0.13 0.114 0.873 CD4_CTL L2
ENSG00000116791 CRYZ -426760 sc-eQTL 3.13e-01 0.0942 0.0932 0.872 CD4_Naive L2
ENSG00000162623 TYW3 -426504 sc-eQTL 1.36e-03 -0.356 0.11 0.872 CD4_Naive L2
ENSG00000254685 FPGT 108436 sc-eQTL 6.29e-02 -0.202 0.108 0.872 CD4_Naive L2
ENSG00000116791 CRYZ -426760 sc-eQTL 7.74e-01 -0.0271 0.0943 0.872 CD4_TCM L2
ENSG00000162623 TYW3 -426504 sc-eQTL 2.96e-01 0.125 0.119 0.872 CD4_TCM L2
ENSG00000254685 FPGT 108436 sc-eQTL 7.40e-01 -0.0402 0.121 0.872 CD4_TCM L2
ENSG00000116791 CRYZ -426760 sc-eQTL 1.25e-01 -0.17 0.11 0.872 CD4_TEM L2
ENSG00000162623 TYW3 -426504 sc-eQTL 4.83e-02 -0.252 0.127 0.872 CD4_TEM L2
ENSG00000254685 FPGT 108436 sc-eQTL 1.71e-01 0.165 0.12 0.872 CD4_TEM L2
ENSG00000116791 CRYZ -426760 sc-eQTL 3.49e-01 0.0966 0.103 0.872 CD8_CTL L2
ENSG00000162623 TYW3 -426504 sc-eQTL 3.45e-01 -0.119 0.126 0.872 CD8_CTL L2
ENSG00000254685 FPGT 108436 sc-eQTL 5.38e-01 -0.0737 0.12 0.872 CD8_CTL L2
ENSG00000116791 CRYZ -426760 sc-eQTL 3.88e-01 -0.088 0.102 0.872 CD8_Naive L2
ENSG00000162623 TYW3 -426504 sc-eQTL 7.02e-01 0.0439 0.114 0.872 CD8_Naive L2
ENSG00000254685 FPGT 108436 sc-eQTL 4.29e-01 0.0951 0.12 0.872 CD8_Naive L2
ENSG00000116791 CRYZ -426760 sc-eQTL 3.56e-01 -0.11 0.118 0.882 CD8_TCM L2
ENSG00000162623 TYW3 -426504 sc-eQTL 6.91e-01 0.0545 0.137 0.882 CD8_TCM L2
ENSG00000254685 FPGT 108436 sc-eQTL 2.65e-01 -0.138 0.123 0.882 CD8_TCM L2
ENSG00000116791 CRYZ -426760 sc-eQTL 4.56e-01 0.0922 0.124 0.87 CD8_TEM L2
ENSG00000162623 TYW3 -426504 sc-eQTL 6.60e-01 -0.0558 0.127 0.87 CD8_TEM L2
ENSG00000254685 FPGT 108436 sc-eQTL 5.88e-02 -0.216 0.114 0.87 CD8_TEM L2
ENSG00000116791 CRYZ -426760 sc-eQTL 8.37e-01 -0.0229 0.111 0.874 MAIT L2
ENSG00000162623 TYW3 -426504 sc-eQTL 7.03e-01 0.0504 0.132 0.874 MAIT L2
ENSG00000254685 FPGT 108436 sc-eQTL 5.65e-03 0.312 0.111 0.874 MAIT L2
ENSG00000116791 CRYZ -426760 sc-eQTL 5.73e-01 -0.0707 0.125 0.873 NK_CD56bright L2
ENSG00000162623 TYW3 -426504 sc-eQTL 8.51e-01 -0.0254 0.135 0.873 NK_CD56bright L2
ENSG00000254685 FPGT 108436 sc-eQTL 7.74e-02 0.208 0.117 0.873 NK_CD56bright L2
ENSG00000116791 CRYZ -426760 sc-eQTL 3.68e-02 -0.217 0.103 0.871 NK_CD56dim L2
ENSG00000162623 TYW3 -426504 sc-eQTL 7.82e-01 -0.0326 0.118 0.871 NK_CD56dim L2
ENSG00000254685 FPGT 108436 sc-eQTL 9.26e-01 -0.0113 0.121 0.871 NK_CD56dim L2
ENSG00000116791 CRYZ -426760 sc-eQTL 8.99e-01 0.0158 0.125 0.868 NK_HLA L2
ENSG00000162623 TYW3 -426504 sc-eQTL 4.85e-01 0.0901 0.129 0.868 NK_HLA L2
ENSG00000254685 FPGT 108436 sc-eQTL 9.10e-01 -0.0142 0.125 0.868 NK_HLA L2
ENSG00000116791 CRYZ -426760 sc-eQTL 7.69e-01 0.0317 0.107 0.871 NK_cytokine L2
ENSG00000162623 TYW3 -426504 sc-eQTL 9.38e-02 0.196 0.116 0.871 NK_cytokine L2
ENSG00000254685 FPGT 108436 sc-eQTL 5.98e-01 -0.0608 0.115 0.871 NK_cytokine L2
ENSG00000116791 CRYZ -426760 sc-eQTL 8.47e-01 -0.0292 0.151 0.867 PB L2
ENSG00000162623 TYW3 -426504 sc-eQTL 4.37e-01 -0.114 0.145 0.867 PB L2
ENSG00000254685 FPGT 108436 sc-eQTL 8.10e-01 0.0349 0.144 0.867 PB L2
ENSG00000116791 CRYZ -426760 sc-eQTL 7.27e-01 -0.0451 0.129 0.876 Pro_T L2
ENSG00000162623 TYW3 -426504 sc-eQTL 5.91e-01 0.0543 0.101 0.876 Pro_T L2
ENSG00000254685 FPGT 108436 sc-eQTL 7.40e-01 0.0383 0.115 0.876 Pro_T L2
ENSG00000116791 CRYZ -426760 sc-eQTL 1.62e-01 0.165 0.117 0.872 Treg L2
ENSG00000162623 TYW3 -426504 sc-eQTL 7.37e-01 0.0402 0.12 0.872 Treg L2
ENSG00000254685 FPGT 108436 sc-eQTL 5.07e-01 -0.0779 0.117 0.872 Treg L2
ENSG00000116791 CRYZ -426760 sc-eQTL 3.82e-01 0.112 0.127 0.868 cDC L2
ENSG00000162623 TYW3 -426504 sc-eQTL 7.66e-02 0.226 0.127 0.868 cDC L2
ENSG00000254685 FPGT 108436 sc-eQTL 5.01e-01 -0.0886 0.131 0.868 cDC L2
ENSG00000116791 CRYZ -426760 sc-eQTL 8.90e-01 0.0182 0.131 0.872 cMono_IL1B L2
ENSG00000162623 TYW3 -426504 sc-eQTL 1.21e-01 0.193 0.124 0.872 cMono_IL1B L2
ENSG00000254685 FPGT 108436 sc-eQTL 3.16e-02 -0.253 0.117 0.872 cMono_IL1B L2
ENSG00000116791 CRYZ -426760 sc-eQTL 5.57e-01 0.0751 0.128 0.872 cMono_S100A L2
ENSG00000162623 TYW3 -426504 sc-eQTL 8.25e-01 -0.0288 0.13 0.872 cMono_S100A L2
ENSG00000254685 FPGT 108436 sc-eQTL 1.41e-01 -0.171 0.116 0.872 cMono_S100A L2
ENSG00000116791 CRYZ -426760 sc-eQTL 7.43e-01 0.0455 0.138 0.873 gdT L2
ENSG00000162623 TYW3 -426504 sc-eQTL 1.74e-01 -0.202 0.148 0.873 gdT L2
ENSG00000254685 FPGT 108436 sc-eQTL 8.60e-01 -0.0247 0.14 0.873 gdT L2
ENSG00000116791 CRYZ -426760 sc-eQTL 4.01e-02 0.249 0.121 0.876 intMono L2
ENSG00000162623 TYW3 -426504 sc-eQTL 3.70e-01 -0.119 0.132 0.876 intMono L2
ENSG00000254685 FPGT 108436 sc-eQTL 8.19e-02 -0.214 0.122 0.876 intMono L2
ENSG00000116791 CRYZ -426760 sc-eQTL 7.54e-01 -0.0376 0.12 0.871 ncMono L2
ENSG00000162623 TYW3 -426504 sc-eQTL 5.11e-02 0.26 0.132 0.871 ncMono L2
ENSG00000254685 FPGT 108436 sc-eQTL 6.80e-01 -0.0474 0.115 0.871 ncMono L2
ENSG00000116791 CRYZ -426760 sc-eQTL 3.52e-01 0.132 0.142 0.876 pDC L2
ENSG00000162623 TYW3 -426504 sc-eQTL 9.72e-01 0.00486 0.14 0.876 pDC L2
ENSG00000254685 FPGT 108436 sc-eQTL 1.58e-01 0.183 0.129 0.876 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116791 CRYZ -426760 sc-eQTL 6.78e-01 0.0369 0.0885 0.872 B_Memory LOneK1K
ENSG00000162623 TYW3 -426504 sc-eQTL 3.28e-01 0.125 0.127 0.872 B_Memory LOneK1K
ENSG00000254685 FPGT 108436 sc-eQTL 3.85e-01 -0.108 0.124 0.872 B_Memory LOneK1K
ENSG00000116791 CRYZ -426760 sc-eQTL 2.58e-01 0.107 0.0948 0.872 B_Naive LOneK1K
ENSG00000162623 TYW3 -426504 sc-eQTL 1.33e-01 0.187 0.124 0.872 B_Naive LOneK1K
ENSG00000254685 FPGT 108436 sc-eQTL 7.20e-01 0.0431 0.12 0.872 B_Naive LOneK1K
ENSG00000116791 CRYZ -426760 sc-eQTL 5.58e-01 0.0777 0.132 0.872 CD14_Mono LOneK1K
ENSG00000162623 TYW3 -426504 sc-eQTL 1.88e-01 0.159 0.12 0.872 CD14_Mono LOneK1K
ENSG00000254685 FPGT 108436 sc-eQTL 3.00e-02 -0.236 0.108 0.872 CD14_Mono LOneK1K
ENSG00000116791 CRYZ -426760 sc-eQTL 4.21e-01 0.0983 0.122 0.871 CD16_Mono LOneK1K
ENSG00000162623 TYW3 -426504 sc-eQTL 1.66e-01 0.172 0.123 0.871 CD16_Mono LOneK1K
ENSG00000254685 FPGT 108436 sc-eQTL 1.56e-01 -0.162 0.114 0.871 CD16_Mono LOneK1K
ENSG00000116791 CRYZ -426760 sc-eQTL 2.55e-01 -0.107 0.094 0.871 NK_CD56dim LOneK1K
ENSG00000162623 TYW3 -426504 sc-eQTL 1.08e-01 0.178 0.11 0.871 NK_CD56dim LOneK1K
ENSG00000254685 FPGT 108436 sc-eQTL 9.43e-01 -0.00834 0.117 0.871 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162620 LRRIQ3 108461 eQTL 3.14e-09 -0.317 0.0529 0.0 0.0 0.135
ENSG00000162623 TYW3 -426504 eQTL 0.000159 -0.0765 0.0202 0.0163 0.013 0.135
ENSG00000254685 FPGT 108436 eQTL 1.2e-06 -0.13 0.0265 0.0 0.0 0.135

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162620 LRRIQ3 108461 5.75e-06 6.81e-06 1.33e-06 3.85e-06 2.35e-06 2.59e-06 9.22e-06 1.92e-06 6.17e-06 4.26e-06 8.97e-06 4.15e-06 1.1e-05 3.17e-06 1.66e-06 5.73e-06 3.72e-06 4.08e-06 2.58e-06 2.74e-06 4.46e-06 7.66e-06 5.82e-06 3.3e-06 9.83e-06 3.49e-06 4.46e-06 2.64e-06 7.12e-06 7.18e-06 3.84e-06 1.02e-06 1.25e-06 3.29e-06 2.82e-06 2.66e-06 1.83e-06 1.89e-06 2e-06 1.02e-06 1.12e-06 8.48e-06 1.28e-06 2.62e-07 8.46e-07 1.62e-06 1.42e-06 7.37e-07 4.43e-07
ENSG00000254685 FPGT 108436 5.75e-06 6.81e-06 1.33e-06 3.85e-06 2.35e-06 2.59e-06 9.22e-06 1.92e-06 6.17e-06 4.26e-06 8.97e-06 4.15e-06 1.1e-05 3.17e-06 1.66e-06 5.73e-06 3.72e-06 4.08e-06 2.58e-06 2.74e-06 4.46e-06 7.66e-06 5.82e-06 3.3e-06 9.83e-06 3.49e-06 4.46e-06 2.64e-06 7.12e-06 7.18e-06 3.84e-06 1.02e-06 1.25e-06 3.29e-06 2.82e-06 2.66e-06 1.83e-06 1.89e-06 2e-06 1.02e-06 1.12e-06 8.48e-06 1.28e-06 2.62e-07 8.46e-07 1.62e-06 1.42e-06 7.37e-07 4.43e-07