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Genes within 1Mb (chr1:74182724:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116791 CRYZ -550684 sc-eQTL 3.06e-01 0.0888 0.0865 0.12 B L1
ENSG00000162623 TYW3 -550428 sc-eQTL 8.15e-01 0.0285 0.122 0.12 B L1
ENSG00000254685 FPGT -15488 sc-eQTL 7.25e-02 0.223 0.124 0.12 B L1
ENSG00000116791 CRYZ -550684 sc-eQTL 8.41e-02 0.155 0.0894 0.12 CD4T L1
ENSG00000162623 TYW3 -550428 sc-eQTL 2.41e-02 0.241 0.106 0.12 CD4T L1
ENSG00000254685 FPGT -15488 sc-eQTL 2.58e-03 0.319 0.105 0.12 CD4T L1
ENSG00000116791 CRYZ -550684 sc-eQTL 9.55e-01 0.00531 0.0945 0.12 CD8T L1
ENSG00000162623 TYW3 -550428 sc-eQTL 1.40e-01 0.171 0.116 0.12 CD8T L1
ENSG00000254685 FPGT -15488 sc-eQTL 2.71e-02 0.281 0.126 0.12 CD8T L1
ENSG00000116791 CRYZ -550684 sc-eQTL 8.60e-01 -0.0235 0.133 0.115 DC L1
ENSG00000162623 TYW3 -550428 sc-eQTL 2.63e-01 -0.147 0.131 0.115 DC L1
ENSG00000254685 FPGT -15488 sc-eQTL 1.55e-01 0.191 0.134 0.115 DC L1
ENSG00000116791 CRYZ -550684 sc-eQTL 6.14e-01 0.0714 0.141 0.12 Mono L1
ENSG00000162623 TYW3 -550428 sc-eQTL 2.09e-01 0.161 0.128 0.12 Mono L1
ENSG00000254685 FPGT -15488 sc-eQTL 5.39e-02 0.209 0.108 0.12 Mono L1
ENSG00000116791 CRYZ -550684 sc-eQTL 3.90e-01 0.0851 0.0989 0.12 NK L1
ENSG00000162623 TYW3 -550428 sc-eQTL 7.48e-01 -0.038 0.118 0.12 NK L1
ENSG00000254685 FPGT -15488 sc-eQTL 4.57e-03 0.335 0.117 0.12 NK L1
ENSG00000116791 CRYZ -550684 sc-eQTL 7.33e-01 0.0408 0.119 0.12 Other_T L1
ENSG00000162623 TYW3 -550428 sc-eQTL 3.75e-01 0.0944 0.106 0.12 Other_T L1
ENSG00000254685 FPGT -15488 sc-eQTL 2.17e-01 -0.161 0.13 0.12 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116791 CRYZ -550684 sc-eQTL 2.99e-01 0.149 0.143 0.112 B_Activated L2
ENSG00000162623 TYW3 -550428 sc-eQTL 9.20e-01 -0.0153 0.152 0.112 B_Activated L2
ENSG00000254685 FPGT -15488 sc-eQTL 1.58e-02 0.329 0.135 0.112 B_Activated L2
ENSG00000116791 CRYZ -550684 sc-eQTL 9.84e-01 -0.00214 0.107 0.12 B_Intermediate L2
ENSG00000162623 TYW3 -550428 sc-eQTL 9.10e-01 0.016 0.141 0.12 B_Intermediate L2
ENSG00000254685 FPGT -15488 sc-eQTL 6.34e-03 0.357 0.129 0.12 B_Intermediate L2
ENSG00000116791 CRYZ -550684 sc-eQTL 3.92e-01 -0.0981 0.114 0.121 B_Memory L2
ENSG00000162623 TYW3 -550428 sc-eQTL 4.50e-01 0.103 0.136 0.121 B_Memory L2
ENSG00000254685 FPGT -15488 sc-eQTL 3.54e-01 0.127 0.137 0.121 B_Memory L2
ENSG00000116791 CRYZ -550684 sc-eQTL 7.85e-01 0.031 0.114 0.12 B_Naive1 L2
ENSG00000162623 TYW3 -550428 sc-eQTL 4.05e-01 -0.116 0.139 0.12 B_Naive1 L2
ENSG00000254685 FPGT -15488 sc-eQTL 9.93e-01 -0.00115 0.13 0.12 B_Naive1 L2
ENSG00000116791 CRYZ -550684 sc-eQTL 1.39e-01 0.171 0.115 0.12 B_Naive2 L2
ENSG00000162623 TYW3 -550428 sc-eQTL 9.39e-01 0.0107 0.138 0.12 B_Naive2 L2
ENSG00000254685 FPGT -15488 sc-eQTL 7.70e-02 0.235 0.132 0.12 B_Naive2 L2
ENSG00000116791 CRYZ -550684 sc-eQTL 1.24e-01 0.211 0.137 0.114 CD4_CTL L2
ENSG00000162623 TYW3 -550428 sc-eQTL 6.77e-01 0.0607 0.145 0.114 CD4_CTL L2
ENSG00000254685 FPGT -15488 sc-eQTL 7.81e-01 0.0351 0.126 0.114 CD4_CTL L2
ENSG00000116791 CRYZ -550684 sc-eQTL 6.17e-02 0.188 0.0999 0.12 CD4_Naive L2
ENSG00000162623 TYW3 -550428 sc-eQTL 5.46e-03 0.334 0.119 0.12 CD4_Naive L2
ENSG00000254685 FPGT -15488 sc-eQTL 1.98e-04 0.431 0.114 0.12 CD4_Naive L2
ENSG00000116791 CRYZ -550684 sc-eQTL 6.05e-01 0.0526 0.102 0.12 CD4_TCM L2
ENSG00000162623 TYW3 -550428 sc-eQTL 8.39e-01 0.0261 0.128 0.12 CD4_TCM L2
ENSG00000254685 FPGT -15488 sc-eQTL 9.34e-01 0.0107 0.13 0.12 CD4_TCM L2
ENSG00000116791 CRYZ -550684 sc-eQTL 3.69e-01 0.109 0.121 0.12 CD4_TEM L2
ENSG00000162623 TYW3 -550428 sc-eQTL 9.79e-02 0.23 0.139 0.12 CD4_TEM L2
ENSG00000254685 FPGT -15488 sc-eQTL 5.93e-01 -0.0705 0.132 0.12 CD4_TEM L2
ENSG00000116791 CRYZ -550684 sc-eQTL 7.31e-01 0.0393 0.114 0.12 CD8_CTL L2
ENSG00000162623 TYW3 -550428 sc-eQTL 9.32e-01 -0.0119 0.14 0.12 CD8_CTL L2
ENSG00000254685 FPGT -15488 sc-eQTL 4.45e-01 0.101 0.132 0.12 CD8_CTL L2
ENSG00000116791 CRYZ -550684 sc-eQTL 8.15e-01 -0.0256 0.109 0.12 CD8_Naive L2
ENSG00000162623 TYW3 -550428 sc-eQTL 2.64e-01 0.137 0.123 0.12 CD8_Naive L2
ENSG00000254685 FPGT -15488 sc-eQTL 2.25e-01 0.157 0.129 0.12 CD8_Naive L2
ENSG00000116791 CRYZ -550684 sc-eQTL 5.89e-01 0.071 0.131 0.109 CD8_TCM L2
ENSG00000162623 TYW3 -550428 sc-eQTL 2.51e-01 0.174 0.151 0.109 CD8_TCM L2
ENSG00000254685 FPGT -15488 sc-eQTL 1.98e-01 0.176 0.136 0.109 CD8_TCM L2
ENSG00000116791 CRYZ -550684 sc-eQTL 2.39e-01 -0.154 0.131 0.121 CD8_TEM L2
ENSG00000162623 TYW3 -550428 sc-eQTL 3.99e-01 0.113 0.134 0.121 CD8_TEM L2
ENSG00000254685 FPGT -15488 sc-eQTL 3.42e-01 0.115 0.121 0.121 CD8_TEM L2
ENSG00000116791 CRYZ -550684 sc-eQTL 1.90e-01 0.162 0.123 0.115 MAIT L2
ENSG00000162623 TYW3 -550428 sc-eQTL 8.65e-01 -0.0251 0.147 0.115 MAIT L2
ENSG00000254685 FPGT -15488 sc-eQTL 9.84e-01 -0.00251 0.127 0.115 MAIT L2
ENSG00000116791 CRYZ -550684 sc-eQTL 3.57e-01 0.122 0.133 0.12 NK_CD56bright L2
ENSG00000162623 TYW3 -550428 sc-eQTL 5.83e-01 -0.0785 0.143 0.12 NK_CD56bright L2
ENSG00000254685 FPGT -15488 sc-eQTL 8.89e-01 0.0175 0.125 0.12 NK_CD56bright L2
ENSG00000116791 CRYZ -550684 sc-eQTL 4.17e-01 0.0914 0.112 0.121 NK_CD56dim L2
ENSG00000162623 TYW3 -550428 sc-eQTL 9.95e-01 -0.00082 0.127 0.121 NK_CD56dim L2
ENSG00000254685 FPGT -15488 sc-eQTL 1.30e-02 0.323 0.129 0.121 NK_CD56dim L2
ENSG00000116791 CRYZ -550684 sc-eQTL 1.14e-01 0.212 0.134 0.121 NK_HLA L2
ENSG00000162623 TYW3 -550428 sc-eQTL 3.49e-01 -0.13 0.139 0.121 NK_HLA L2
ENSG00000254685 FPGT -15488 sc-eQTL 9.75e-01 0.00428 0.135 0.121 NK_HLA L2
ENSG00000116791 CRYZ -550684 sc-eQTL 5.44e-01 0.0705 0.116 0.121 NK_cytokine L2
ENSG00000162623 TYW3 -550428 sc-eQTL 3.87e-01 -0.109 0.126 0.121 NK_cytokine L2
ENSG00000254685 FPGT -15488 sc-eQTL 4.41e-01 0.0959 0.124 0.121 NK_cytokine L2
ENSG00000116791 CRYZ -550684 sc-eQTL 6.50e-01 -0.0761 0.167 0.13 PB L2
ENSG00000162623 TYW3 -550428 sc-eQTL 4.13e-01 -0.132 0.161 0.13 PB L2
ENSG00000254685 FPGT -15488 sc-eQTL 4.08e-02 -0.325 0.157 0.13 PB L2
ENSG00000116791 CRYZ -550684 sc-eQTL 3.27e-01 0.136 0.138 0.117 Pro_T L2
ENSG00000162623 TYW3 -550428 sc-eQTL 7.74e-01 -0.0313 0.109 0.117 Pro_T L2
ENSG00000254685 FPGT -15488 sc-eQTL 3.63e-01 -0.113 0.124 0.117 Pro_T L2
ENSG00000116791 CRYZ -550684 sc-eQTL 8.77e-01 -0.0206 0.133 0.12 Treg L2
ENSG00000162623 TYW3 -550428 sc-eQTL 3.43e-01 0.128 0.135 0.12 Treg L2
ENSG00000254685 FPGT -15488 sc-eQTL 2.61e-01 0.148 0.132 0.12 Treg L2
ENSG00000116791 CRYZ -550684 sc-eQTL 6.28e-01 0.0666 0.137 0.12 cDC L2
ENSG00000162623 TYW3 -550428 sc-eQTL 9.35e-01 0.0112 0.138 0.12 cDC L2
ENSG00000254685 FPGT -15488 sc-eQTL 2.97e-01 0.147 0.141 0.12 cDC L2
ENSG00000116791 CRYZ -550684 sc-eQTL 3.05e-01 0.144 0.14 0.12 cMono_IL1B L2
ENSG00000162623 TYW3 -550428 sc-eQTL 2.17e-01 0.165 0.133 0.12 cMono_IL1B L2
ENSG00000254685 FPGT -15488 sc-eQTL 4.46e-02 0.253 0.125 0.12 cMono_IL1B L2
ENSG00000116791 CRYZ -550684 sc-eQTL 9.96e-01 -0.000755 0.138 0.12 cMono_S100A L2
ENSG00000162623 TYW3 -550428 sc-eQTL 9.60e-01 -0.00698 0.14 0.12 cMono_S100A L2
ENSG00000254685 FPGT -15488 sc-eQTL 9.58e-02 0.209 0.125 0.12 cMono_S100A L2
ENSG00000116791 CRYZ -550684 sc-eQTL 6.68e-01 0.0661 0.154 0.103 gdT L2
ENSG00000162623 TYW3 -550428 sc-eQTL 1.67e-01 0.228 0.164 0.103 gdT L2
ENSG00000254685 FPGT -15488 sc-eQTL 6.01e-01 0.0816 0.156 0.103 gdT L2
ENSG00000116791 CRYZ -550684 sc-eQTL 5.21e-01 -0.0846 0.132 0.122 intMono L2
ENSG00000162623 TYW3 -550428 sc-eQTL 1.72e-01 0.195 0.143 0.122 intMono L2
ENSG00000254685 FPGT -15488 sc-eQTL 3.04e-01 0.137 0.133 0.122 intMono L2
ENSG00000116791 CRYZ -550684 sc-eQTL 1.21e-01 0.207 0.133 0.12 ncMono L2
ENSG00000162623 TYW3 -550428 sc-eQTL 4.30e-01 0.118 0.149 0.12 ncMono L2
ENSG00000254685 FPGT -15488 sc-eQTL 9.63e-01 -0.00588 0.128 0.12 ncMono L2
ENSG00000116791 CRYZ -550684 sc-eQTL 5.07e-01 -0.0972 0.146 0.113 pDC L2
ENSG00000162623 TYW3 -550428 sc-eQTL 4.86e-01 -0.101 0.144 0.113 pDC L2
ENSG00000254685 FPGT -15488 sc-eQTL 2.23e-01 0.164 0.134 0.113 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116791 CRYZ -550684 sc-eQTL 9.68e-01 -0.00387 0.0974 0.12 B_Memory LOneK1K
ENSG00000162623 TYW3 -550428 sc-eQTL 5.00e-01 0.0947 0.14 0.12 B_Memory LOneK1K
ENSG00000254685 FPGT -15488 sc-eQTL 2.57e-03 0.408 0.134 0.12 B_Memory LOneK1K
ENSG00000116791 CRYZ -550684 sc-eQTL 5.78e-01 0.0576 0.103 0.12 B_Naive LOneK1K
ENSG00000162623 TYW3 -550428 sc-eQTL 6.48e-01 -0.0619 0.135 0.12 B_Naive LOneK1K
ENSG00000254685 FPGT -15488 sc-eQTL 2.32e-01 0.156 0.13 0.12 B_Naive LOneK1K
ENSG00000116791 CRYZ -550684 sc-eQTL 4.19e-01 0.115 0.142 0.12 CD14_Mono LOneK1K
ENSG00000162623 TYW3 -550428 sc-eQTL 2.14e-01 0.161 0.129 0.12 CD14_Mono LOneK1K
ENSG00000254685 FPGT -15488 sc-eQTL 1.99e-02 0.272 0.116 0.12 CD14_Mono LOneK1K
ENSG00000116791 CRYZ -550684 sc-eQTL 7.99e-01 -0.035 0.137 0.121 CD16_Mono LOneK1K
ENSG00000162623 TYW3 -550428 sc-eQTL 4.58e-01 0.104 0.139 0.121 CD16_Mono LOneK1K
ENSG00000254685 FPGT -15488 sc-eQTL 5.78e-01 -0.0716 0.129 0.121 CD16_Mono LOneK1K
ENSG00000116791 CRYZ -550684 sc-eQTL 5.72e-01 0.058 0.102 0.121 NK_CD56dim LOneK1K
ENSG00000162623 TYW3 -550428 sc-eQTL 8.33e-01 -0.0254 0.121 0.121 NK_CD56dim LOneK1K
ENSG00000254685 FPGT -15488 sc-eQTL 3.11e-03 0.371 0.124 0.121 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162620 LRRIQ3 -15463 eQTL 6.670000000000001e-26 0.577 0.0532 0.0 0.0 0.12
ENSG00000254685 FPGT -15488 eQTL 1.4e-25 0.286 0.0265 0.0 0.0 0.12

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162620 LRRIQ3 -15463 3.49e-05 3.37e-05 7.19e-06 1.75e-05 7.19e-06 1.79e-05 5.11e-05 6.24e-06 3.78e-05 1.83e-05 4.51e-05 2.12e-05 5.64e-05 1.64e-05 8.49e-06 2.39e-05 2.12e-05 3.05e-05 1.05e-05 9.1e-06 2.04e-05 3.96e-05 3.55e-05 1.25e-05 5.36e-05 1.09e-05 1.78e-05 1.57e-05 3.72e-05 3.83e-05 2.48e-05 2.75e-06 4.74e-06 8.84e-06 1.47e-05 7.98e-06 4.49e-06 4.65e-06 6.87e-06 4.22e-06 2.06e-06 4e-05 4.52e-06 5.86e-07 3.23e-06 5.22e-06 4.92e-06 2.48e-06 1.84e-06
ENSG00000254685 FPGT -15488 3.49e-05 3.37e-05 7.19e-06 1.75e-05 7.19e-06 1.79e-05 5.11e-05 6.24e-06 3.78e-05 1.83e-05 4.51e-05 2.12e-05 5.64e-05 1.64e-05 8.49e-06 2.39e-05 2.12e-05 3.05e-05 1.05e-05 9.1e-06 2.04e-05 3.96e-05 3.52e-05 1.25e-05 5.36e-05 1.09e-05 1.78e-05 1.57e-05 3.72e-05 3.83e-05 2.48e-05 2.75e-06 4.74e-06 8.84e-06 1.47e-05 7.98e-06 4.49e-06 4.65e-06 6.87e-06 4.22e-06 2.06e-06 4e-05 4.52e-06 5.86e-07 3.23e-06 5.22e-06 4.92e-06 2.48e-06 1.82e-06