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Genes within 1Mb (chr1:74110388:C:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116791 CRYZ -623020 sc-eQTL 5.10e-01 0.0416 0.0629 0.75 B L1
ENSG00000162623 TYW3 -622764 sc-eQTL 2.26e-01 -0.107 0.0883 0.75 B L1
ENSG00000254685 FPGT -87824 sc-eQTL 1.15e-04 -0.344 0.0874 0.75 B L1
ENSG00000116791 CRYZ -623020 sc-eQTL 7.26e-01 0.023 0.0655 0.75 CD4T L1
ENSG00000162623 TYW3 -622764 sc-eQTL 9.67e-02 -0.13 0.0777 0.75 CD4T L1
ENSG00000254685 FPGT -87824 sc-eQTL 1.26e-05 -0.332 0.0743 0.75 CD4T L1
ENSG00000116791 CRYZ -623020 sc-eQTL 4.81e-01 0.0481 0.0682 0.75 CD8T L1
ENSG00000162623 TYW3 -622764 sc-eQTL 4.71e-01 -0.0605 0.0838 0.75 CD8T L1
ENSG00000254685 FPGT -87824 sc-eQTL 2.49e-04 -0.333 0.0894 0.75 CD8T L1
ENSG00000116791 CRYZ -623020 sc-eQTL 7.56e-01 0.0284 0.0913 0.745 DC L1
ENSG00000162623 TYW3 -622764 sc-eQTL 4.05e-01 0.0752 0.0901 0.745 DC L1
ENSG00000254685 FPGT -87824 sc-eQTL 7.62e-01 -0.0281 0.0926 0.745 DC L1
ENSG00000116791 CRYZ -623020 sc-eQTL 6.24e-01 0.0495 0.101 0.75 Mono L1
ENSG00000162623 TYW3 -622764 sc-eQTL 3.85e-01 -0.0794 0.0911 0.75 Mono L1
ENSG00000254685 FPGT -87824 sc-eQTL 8.30e-05 -0.3 0.0748 0.75 Mono L1
ENSG00000116791 CRYZ -623020 sc-eQTL 4.69e-01 0.0525 0.0723 0.751 NK L1
ENSG00000162623 TYW3 -622764 sc-eQTL 7.80e-01 0.0242 0.0863 0.751 NK L1
ENSG00000254685 FPGT -87824 sc-eQTL 6.69e-06 -0.383 0.083 0.751 NK L1
ENSG00000116791 CRYZ -623020 sc-eQTL 3.31e-01 -0.0843 0.0864 0.75 Other_T L1
ENSG00000162623 TYW3 -622764 sc-eQTL 1.34e-01 -0.116 0.0768 0.75 Other_T L1
ENSG00000254685 FPGT -87824 sc-eQTL 2.72e-02 -0.207 0.0933 0.75 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116791 CRYZ -623020 sc-eQTL 8.66e-01 -0.0177 0.105 0.755 B_Activated L2
ENSG00000162623 TYW3 -622764 sc-eQTL 7.06e-01 0.042 0.111 0.755 B_Activated L2
ENSG00000254685 FPGT -87824 sc-eQTL 6.31e-03 -0.272 0.0983 0.755 B_Activated L2
ENSG00000116791 CRYZ -623020 sc-eQTL 2.62e-01 0.087 0.0775 0.749 B_Intermediate L2
ENSG00000162623 TYW3 -622764 sc-eQTL 9.49e-01 0.00663 0.103 0.749 B_Intermediate L2
ENSG00000254685 FPGT -87824 sc-eQTL 3.41e-01 -0.0912 0.0955 0.749 B_Intermediate L2
ENSG00000116791 CRYZ -623020 sc-eQTL 7.97e-01 -0.0215 0.0832 0.748 B_Memory L2
ENSG00000162623 TYW3 -622764 sc-eQTL 9.63e-01 0.00461 0.0987 0.748 B_Memory L2
ENSG00000254685 FPGT -87824 sc-eQTL 1.25e-01 -0.153 0.0992 0.748 B_Memory L2
ENSG00000116791 CRYZ -623020 sc-eQTL 6.16e-01 0.0422 0.084 0.75 B_Naive1 L2
ENSG00000162623 TYW3 -622764 sc-eQTL 4.46e-01 -0.0785 0.103 0.75 B_Naive1 L2
ENSG00000254685 FPGT -87824 sc-eQTL 4.97e-03 -0.268 0.0943 0.75 B_Naive1 L2
ENSG00000116791 CRYZ -623020 sc-eQTL 6.18e-01 0.0419 0.0838 0.749 B_Naive2 L2
ENSG00000162623 TYW3 -622764 sc-eQTL 4.70e-01 -0.0724 0.1 0.749 B_Naive2 L2
ENSG00000254685 FPGT -87824 sc-eQTL 6.74e-02 -0.176 0.0958 0.749 B_Naive2 L2
ENSG00000116791 CRYZ -623020 sc-eQTL 2.60e-01 0.11 0.0978 0.75 CD4_CTL L2
ENSG00000162623 TYW3 -622764 sc-eQTL 9.24e-01 0.0099 0.104 0.75 CD4_CTL L2
ENSG00000254685 FPGT -87824 sc-eQTL 3.39e-01 -0.0859 0.0897 0.75 CD4_CTL L2
ENSG00000116791 CRYZ -623020 sc-eQTL 8.59e-01 0.013 0.0731 0.75 CD4_Naive L2
ENSG00000162623 TYW3 -622764 sc-eQTL 2.05e-01 -0.111 0.0876 0.75 CD4_Naive L2
ENSG00000254685 FPGT -87824 sc-eQTL 3.44e-03 -0.248 0.0837 0.75 CD4_Naive L2
ENSG00000116791 CRYZ -623020 sc-eQTL 2.96e-01 0.0776 0.0741 0.75 CD4_TCM L2
ENSG00000162623 TYW3 -622764 sc-eQTL 1.28e-01 -0.142 0.0933 0.75 CD4_TCM L2
ENSG00000254685 FPGT -87824 sc-eQTL 8.59e-04 -0.313 0.0926 0.75 CD4_TCM L2
ENSG00000116791 CRYZ -623020 sc-eQTL 5.50e-01 -0.0526 0.088 0.75 CD4_TEM L2
ENSG00000162623 TYW3 -622764 sc-eQTL 4.05e-01 0.0845 0.101 0.75 CD4_TEM L2
ENSG00000254685 FPGT -87824 sc-eQTL 2.60e-01 -0.108 0.0956 0.75 CD4_TEM L2
ENSG00000116791 CRYZ -623020 sc-eQTL 6.15e-01 0.0407 0.0809 0.75 CD8_CTL L2
ENSG00000162623 TYW3 -622764 sc-eQTL 7.49e-01 0.0318 0.099 0.75 CD8_CTL L2
ENSG00000254685 FPGT -87824 sc-eQTL 2.82e-03 -0.278 0.0919 0.75 CD8_CTL L2
ENSG00000116791 CRYZ -623020 sc-eQTL 2.38e-01 -0.0927 0.0782 0.75 CD8_Naive L2
ENSG00000162623 TYW3 -622764 sc-eQTL 5.16e-01 -0.0573 0.0882 0.75 CD8_Naive L2
ENSG00000254685 FPGT -87824 sc-eQTL 1.39e-02 -0.227 0.0914 0.75 CD8_Naive L2
ENSG00000116791 CRYZ -623020 sc-eQTL 6.40e-01 0.0423 0.0904 0.75 CD8_TCM L2
ENSG00000162623 TYW3 -622764 sc-eQTL 5.88e-01 -0.0567 0.104 0.75 CD8_TCM L2
ENSG00000254685 FPGT -87824 sc-eQTL 9.03e-01 0.0114 0.0942 0.75 CD8_TCM L2
ENSG00000116791 CRYZ -623020 sc-eQTL 7.86e-02 0.172 0.0972 0.753 CD8_TEM L2
ENSG00000162623 TYW3 -622764 sc-eQTL 8.26e-02 0.174 0.0995 0.753 CD8_TEM L2
ENSG00000254685 FPGT -87824 sc-eQTL 1.18e-01 -0.142 0.0902 0.753 CD8_TEM L2
ENSG00000116791 CRYZ -623020 sc-eQTL 2.47e-01 -0.101 0.0874 0.751 MAIT L2
ENSG00000162623 TYW3 -622764 sc-eQTL 4.11e-01 -0.0856 0.104 0.751 MAIT L2
ENSG00000254685 FPGT -87824 sc-eQTL 3.48e-01 -0.084 0.0892 0.751 MAIT L2
ENSG00000116791 CRYZ -623020 sc-eQTL 8.02e-01 0.025 0.0992 0.758 NK_CD56bright L2
ENSG00000162623 TYW3 -622764 sc-eQTL 9.36e-01 -0.0086 0.107 0.758 NK_CD56bright L2
ENSG00000254685 FPGT -87824 sc-eQTL 2.59e-01 -0.105 0.0932 0.758 NK_CD56bright L2
ENSG00000116791 CRYZ -623020 sc-eQTL 1.77e-01 -0.112 0.0824 0.75 NK_CD56dim L2
ENSG00000162623 TYW3 -622764 sc-eQTL 7.41e-01 0.031 0.0935 0.75 NK_CD56dim L2
ENSG00000254685 FPGT -87824 sc-eQTL 1.69e-03 -0.299 0.094 0.75 NK_CD56dim L2
ENSG00000116791 CRYZ -623020 sc-eQTL 8.16e-01 -0.0234 0.1 0.751 NK_HLA L2
ENSG00000162623 TYW3 -622764 sc-eQTL 2.90e-01 0.11 0.103 0.751 NK_HLA L2
ENSG00000254685 FPGT -87824 sc-eQTL 1.52e-01 -0.144 0.1 0.751 NK_HLA L2
ENSG00000116791 CRYZ -623020 sc-eQTL 1.87e-03 0.264 0.0839 0.75 NK_cytokine L2
ENSG00000162623 TYW3 -622764 sc-eQTL 8.25e-01 0.0208 0.0936 0.75 NK_cytokine L2
ENSG00000254685 FPGT -87824 sc-eQTL 1.33e-02 -0.226 0.0907 0.75 NK_cytokine L2
ENSG00000116791 CRYZ -623020 sc-eQTL 4.87e-01 0.0865 0.124 0.759 PB L2
ENSG00000162623 TYW3 -622764 sc-eQTL 6.97e-01 0.0468 0.12 0.759 PB L2
ENSG00000254685 FPGT -87824 sc-eQTL 8.40e-01 0.0239 0.119 0.759 PB L2
ENSG00000116791 CRYZ -623020 sc-eQTL 4.43e-01 -0.0776 0.101 0.75 Pro_T L2
ENSG00000162623 TYW3 -622764 sc-eQTL 8.40e-01 0.0161 0.0792 0.75 Pro_T L2
ENSG00000254685 FPGT -87824 sc-eQTL 4.57e-01 -0.0674 0.0905 0.75 Pro_T L2
ENSG00000116791 CRYZ -623020 sc-eQTL 7.52e-01 0.0296 0.0938 0.75 Treg L2
ENSG00000162623 TYW3 -622764 sc-eQTL 5.71e-02 -0.181 0.0944 0.75 Treg L2
ENSG00000254685 FPGT -87824 sc-eQTL 3.70e-01 -0.0836 0.093 0.75 Treg L2
ENSG00000116791 CRYZ -623020 sc-eQTL 4.82e-01 0.0656 0.093 0.741 cDC L2
ENSG00000162623 TYW3 -622764 sc-eQTL 7.36e-01 0.0315 0.0934 0.741 cDC L2
ENSG00000254685 FPGT -87824 sc-eQTL 1.57e-01 -0.136 0.0954 0.741 cDC L2
ENSG00000116791 CRYZ -623020 sc-eQTL 2.95e-01 0.104 0.0989 0.75 cMono_IL1B L2
ENSG00000162623 TYW3 -622764 sc-eQTL 1.85e-01 -0.125 0.0941 0.75 cMono_IL1B L2
ENSG00000254685 FPGT -87824 sc-eQTL 1.40e-03 -0.283 0.0874 0.75 cMono_IL1B L2
ENSG00000116791 CRYZ -623020 sc-eQTL 8.43e-01 -0.0194 0.0977 0.75 cMono_S100A L2
ENSG00000162623 TYW3 -622764 sc-eQTL 8.91e-01 -0.0137 0.0996 0.75 cMono_S100A L2
ENSG00000254685 FPGT -87824 sc-eQTL 1.40e-03 -0.281 0.0869 0.75 cMono_S100A L2
ENSG00000116791 CRYZ -623020 sc-eQTL 7.88e-01 -0.0285 0.106 0.752 gdT L2
ENSG00000162623 TYW3 -622764 sc-eQTL 2.83e-01 -0.122 0.113 0.752 gdT L2
ENSG00000254685 FPGT -87824 sc-eQTL 1.25e-01 -0.165 0.106 0.752 gdT L2
ENSG00000116791 CRYZ -623020 sc-eQTL 9.28e-01 0.0085 0.0935 0.753 intMono L2
ENSG00000162623 TYW3 -622764 sc-eQTL 8.03e-02 -0.177 0.101 0.753 intMono L2
ENSG00000254685 FPGT -87824 sc-eQTL 7.33e-01 -0.0323 0.0945 0.753 intMono L2
ENSG00000116791 CRYZ -623020 sc-eQTL 7.86e-01 0.0254 0.0935 0.747 ncMono L2
ENSG00000162623 TYW3 -622764 sc-eQTL 8.47e-01 -0.0202 0.104 0.747 ncMono L2
ENSG00000254685 FPGT -87824 sc-eQTL 3.88e-01 -0.0775 0.0895 0.747 ncMono L2
ENSG00000116791 CRYZ -623020 sc-eQTL 4.35e-01 0.0808 0.103 0.737 pDC L2
ENSG00000162623 TYW3 -622764 sc-eQTL 3.19e-01 0.101 0.102 0.737 pDC L2
ENSG00000254685 FPGT -87824 sc-eQTL 3.18e-01 0.0947 0.0944 0.737 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116791 CRYZ -623020 sc-eQTL 7.26e-01 0.0246 0.07 0.75 B_Memory LOneK1K
ENSG00000162623 TYW3 -622764 sc-eQTL 8.61e-01 0.0177 0.101 0.75 B_Memory LOneK1K
ENSG00000254685 FPGT -87824 sc-eQTL 1.09e-02 -0.249 0.0968 0.75 B_Memory LOneK1K
ENSG00000116791 CRYZ -623020 sc-eQTL 8.04e-01 0.0186 0.075 0.75 B_Naive LOneK1K
ENSG00000162623 TYW3 -622764 sc-eQTL 3.14e-01 -0.099 0.0982 0.75 B_Naive LOneK1K
ENSG00000254685 FPGT -87824 sc-eQTL 2.55e-03 -0.284 0.0929 0.75 B_Naive LOneK1K
ENSG00000116791 CRYZ -623020 sc-eQTL 3.19e-01 0.101 0.101 0.75 CD14_Mono LOneK1K
ENSG00000162623 TYW3 -622764 sc-eQTL 4.47e-01 -0.0698 0.0917 0.75 CD14_Mono LOneK1K
ENSG00000254685 FPGT -87824 sc-eQTL 4.50e-05 -0.334 0.0801 0.75 CD14_Mono LOneK1K
ENSG00000116791 CRYZ -623020 sc-eQTL 7.02e-01 -0.0369 0.0961 0.75 CD16_Mono LOneK1K
ENSG00000162623 TYW3 -622764 sc-eQTL 2.47e-01 -0.113 0.0975 0.75 CD16_Mono LOneK1K
ENSG00000254685 FPGT -87824 sc-eQTL 6.83e-02 -0.164 0.0894 0.75 CD16_Mono LOneK1K
ENSG00000116791 CRYZ -623020 sc-eQTL 5.04e-01 0.0501 0.0749 0.75 NK_CD56dim LOneK1K
ENSG00000162623 TYW3 -622764 sc-eQTL 8.20e-01 0.0201 0.0882 0.75 NK_CD56dim LOneK1K
ENSG00000254685 FPGT -87824 sc-eQTL 3.02e-06 -0.422 0.0879 0.75 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162620 LRRIQ3 -87799 eQTL 2.78e-81 -0.724 0.0343 0.0 0.00283 0.25
ENSG00000254685 FPGT -87824 eQTL 1.33e-58 -0.313 0.0181 0.0 0.0 0.25

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162620 LRRIQ3 -87799 5.87e-06 6.3e-06 1.32e-06 3.81e-06 2.35e-06 2.47e-06 8.96e-06 1.8e-06 5.51e-06 3.75e-06 8.3e-06 3.63e-06 1.1e-05 2.7e-06 1.57e-06 5.6e-06 3.7e-06 4.19e-06 2.66e-06 2.79e-06 4.25e-06 7.55e-06 5.83e-06 3.21e-06 9.79e-06 3.11e-06 4.15e-06 2.47e-06 7.04e-06 7.76e-06 3.43e-06 9.9e-07 1.23e-06 3.06e-06 2.56e-06 2.36e-06 1.84e-06 1.66e-06 2.01e-06 9.35e-07 1.25e-06 8.33e-06 8.59e-07 2.5e-07 7.6e-07 1.31e-06 1.26e-06 7.55e-07 4.65e-07
ENSG00000254685 FPGT -87824 5.87e-06 6.3e-06 1.32e-06 3.81e-06 2.35e-06 2.47e-06 8.96e-06 1.69e-06 5.51e-06 3.75e-06 8.3e-06 3.63e-06 1.1e-05 2.7e-06 1.57e-06 5.6e-06 3.7e-06 4.19e-06 2.66e-06 2.79e-06 4.25e-06 7.55e-06 5.83e-06 3.21e-06 9.79e-06 3.11e-06 4.15e-06 2.47e-06 7.04e-06 7.76e-06 3.43e-06 9.9e-07 1.23e-06 3.06e-06 2.56e-06 2.36e-06 1.84e-06 1.66e-06 2.01e-06 9.35e-07 1.25e-06 8.33e-06 8.59e-07 2.5e-07 7.6e-07 1.31e-06 1.26e-06 7.55e-07 4.65e-07