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Genes within 1Mb (chr1:71307753:T:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000118454 ANKRD13C 953019 sc-eQTL 9.83e-01 0.00154 0.0735 0.402 B L1
ENSG00000132485 ZRANB2 226464 sc-eQTL 5.63e-01 0.0358 0.0619 0.402 B L1
ENSG00000197568 HHLA3 952948 sc-eQTL 5.91e-01 0.0436 0.081 0.402 B L1
ENSG00000116761 CTH 896535 sc-eQTL 3.78e-02 0.111 0.0531 0.402 CD4T L1
ENSG00000118454 ANKRD13C 953019 sc-eQTL 4.64e-01 -0.036 0.049 0.402 CD4T L1
ENSG00000132485 ZRANB2 226464 sc-eQTL 8.38e-02 0.1 0.0576 0.402 CD4T L1
ENSG00000197568 HHLA3 952948 sc-eQTL 7.38e-01 0.0228 0.0682 0.402 CD4T L1
ENSG00000116761 CTH 896535 sc-eQTL 2.30e-01 0.0754 0.0626 0.402 CD8T L1
ENSG00000118454 ANKRD13C 953019 sc-eQTL 6.97e-03 -0.163 0.0596 0.402 CD8T L1
ENSG00000132485 ZRANB2 226464 sc-eQTL 6.59e-01 0.0312 0.0705 0.402 CD8T L1
ENSG00000197568 HHLA3 952948 sc-eQTL 2.99e-01 0.0747 0.0718 0.402 CD8T L1
ENSG00000116761 CTH 896535 sc-eQTL 9.82e-01 0.00187 0.0838 0.399 DC L1
ENSG00000118454 ANKRD13C 953019 sc-eQTL 5.88e-01 -0.048 0.0886 0.399 DC L1
ENSG00000132485 ZRANB2 226464 sc-eQTL 2.71e-01 0.0854 0.0773 0.399 DC L1
ENSG00000172260 NEGR1 -974786 sc-eQTL 7.45e-01 -0.0233 0.0716 0.399 DC L1
ENSG00000197568 HHLA3 952948 sc-eQTL 6.64e-01 -0.0383 0.0879 0.399 DC L1
ENSG00000116761 CTH 896535 sc-eQTL 2.65e-01 0.0762 0.0682 0.402 Mono L1
ENSG00000118454 ANKRD13C 953019 sc-eQTL 5.12e-01 -0.0532 0.0809 0.402 Mono L1
ENSG00000132485 ZRANB2 226464 sc-eQTL 5.12e-01 0.0461 0.0701 0.402 Mono L1
ENSG00000118454 ANKRD13C 953019 sc-eQTL 9.71e-01 -0.00242 0.067 0.401 NK L1
ENSG00000132485 ZRANB2 226464 sc-eQTL 5.02e-01 0.0464 0.069 0.401 NK L1
ENSG00000197568 HHLA3 952948 sc-eQTL 7.87e-01 -0.0228 0.0842 0.401 NK L1
ENSG00000116761 CTH 896535 sc-eQTL 5.50e-01 -0.0476 0.0794 0.402 Other_T L1
ENSG00000118454 ANKRD13C 953019 sc-eQTL 5.04e-03 -0.234 0.0827 0.402 Other_T L1
ENSG00000132485 ZRANB2 226464 sc-eQTL 9.59e-01 0.00401 0.0787 0.402 Other_T L1
ENSG00000197568 HHLA3 952948 sc-eQTL 2.12e-01 0.111 0.0888 0.402 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000118454 ANKRD13C 953019 sc-eQTL 4.27e-01 0.0863 0.108 0.406 B_Activated L2
ENSG00000132485 ZRANB2 226464 sc-eQTL 6.66e-03 0.295 0.107 0.406 B_Activated L2
ENSG00000197568 HHLA3 952948 sc-eQTL 5.36e-02 0.175 0.0901 0.406 B_Activated L2
ENSG00000118454 ANKRD13C 953019 sc-eQTL 5.51e-01 -0.0538 0.0901 0.401 B_Intermediate L2
ENSG00000132485 ZRANB2 226464 sc-eQTL 3.09e-01 0.091 0.0892 0.401 B_Intermediate L2
ENSG00000197568 HHLA3 952948 sc-eQTL 9.79e-01 0.00255 0.0945 0.401 B_Intermediate L2
ENSG00000118454 ANKRD13C 953019 sc-eQTL 9.92e-01 -0.000752 0.0789 0.405 B_Memory L2
ENSG00000132485 ZRANB2 226464 sc-eQTL 1.84e-01 -0.122 0.0913 0.405 B_Memory L2
ENSG00000197568 HHLA3 952948 sc-eQTL 4.33e-01 -0.0709 0.0903 0.405 B_Memory L2
ENSG00000118454 ANKRD13C 953019 sc-eQTL 4.70e-01 -0.0554 0.0766 0.402 B_Naive1 L2
ENSG00000132485 ZRANB2 226464 sc-eQTL 4.82e-02 0.153 0.0768 0.402 B_Naive1 L2
ENSG00000197568 HHLA3 952948 sc-eQTL 1.91e-01 0.115 0.0875 0.402 B_Naive1 L2
ENSG00000118454 ANKRD13C 953019 sc-eQTL 5.77e-01 0.0547 0.098 0.403 B_Naive2 L2
ENSG00000132485 ZRANB2 226464 sc-eQTL 7.80e-01 -0.0212 0.0761 0.403 B_Naive2 L2
ENSG00000197568 HHLA3 952948 sc-eQTL 8.38e-01 -0.0184 0.0899 0.403 B_Naive2 L2
ENSG00000116761 CTH 896535 sc-eQTL 4.73e-01 -0.0592 0.0823 0.4 CD4_CTL L2
ENSG00000118454 ANKRD13C 953019 sc-eQTL 7.64e-01 0.0273 0.0908 0.4 CD4_CTL L2
ENSG00000132485 ZRANB2 226464 sc-eQTL 8.56e-01 -0.0178 0.0983 0.4 CD4_CTL L2
ENSG00000197568 HHLA3 952948 sc-eQTL 2.62e-01 0.103 0.0916 0.4 CD4_CTL L2
ENSG00000116761 CTH 896535 sc-eQTL 1.73e-02 0.138 0.0575 0.402 CD4_Naive L2
ENSG00000118454 ANKRD13C 953019 sc-eQTL 8.90e-02 -0.0985 0.0576 0.402 CD4_Naive L2
ENSG00000132485 ZRANB2 226464 sc-eQTL 7.41e-02 0.112 0.0621 0.402 CD4_Naive L2
ENSG00000197568 HHLA3 952948 sc-eQTL 8.42e-01 -0.0145 0.0726 0.402 CD4_Naive L2
ENSG00000116761 CTH 896535 sc-eQTL 5.25e-01 -0.0462 0.0724 0.402 CD4_TCM L2
ENSG00000118454 ANKRD13C 953019 sc-eQTL 6.79e-01 0.0284 0.0687 0.402 CD4_TCM L2
ENSG00000132485 ZRANB2 226464 sc-eQTL 1.19e-01 0.116 0.0739 0.402 CD4_TCM L2
ENSG00000197568 HHLA3 952948 sc-eQTL 3.32e-01 0.0874 0.0898 0.402 CD4_TCM L2
ENSG00000116761 CTH 896535 sc-eQTL 9.83e-02 0.132 0.0796 0.402 CD4_TEM L2
ENSG00000118454 ANKRD13C 953019 sc-eQTL 8.12e-01 0.019 0.0795 0.402 CD4_TEM L2
ENSG00000132485 ZRANB2 226464 sc-eQTL 2.47e-01 0.102 0.0877 0.402 CD4_TEM L2
ENSG00000197568 HHLA3 952948 sc-eQTL 5.60e-01 0.0526 0.0902 0.402 CD4_TEM L2
ENSG00000116761 CTH 896535 sc-eQTL 1.17e-01 0.119 0.0755 0.402 CD8_CTL L2
ENSG00000118454 ANKRD13C 953019 sc-eQTL 4.73e-01 -0.0639 0.089 0.402 CD8_CTL L2
ENSG00000132485 ZRANB2 226464 sc-eQTL 7.15e-01 0.031 0.0848 0.402 CD8_CTL L2
ENSG00000197568 HHLA3 952948 sc-eQTL 2.48e-01 0.103 0.0885 0.402 CD8_CTL L2
ENSG00000116761 CTH 896535 sc-eQTL 6.82e-01 -0.0301 0.0733 0.402 CD8_Naive L2
ENSG00000118454 ANKRD13C 953019 sc-eQTL 1.39e-01 -0.101 0.0683 0.402 CD8_Naive L2
ENSG00000132485 ZRANB2 226464 sc-eQTL 8.00e-01 -0.0186 0.0731 0.402 CD8_Naive L2
ENSG00000197568 HHLA3 952948 sc-eQTL 1.14e-01 0.124 0.0781 0.402 CD8_Naive L2
ENSG00000116761 CTH 896535 sc-eQTL 8.28e-01 0.0194 0.0894 0.403 CD8_TCM L2
ENSG00000118454 ANKRD13C 953019 sc-eQTL 3.43e-03 -0.271 0.0914 0.403 CD8_TCM L2
ENSG00000132485 ZRANB2 226464 sc-eQTL 2.22e-01 0.117 0.0954 0.403 CD8_TCM L2
ENSG00000197568 HHLA3 952948 sc-eQTL 3.48e-01 -0.0892 0.0948 0.403 CD8_TCM L2
ENSG00000116761 CTH 896535 sc-eQTL 2.76e-03 0.262 0.0863 0.4 CD8_TEM L2
ENSG00000118454 ANKRD13C 953019 sc-eQTL 1.49e-01 -0.147 0.101 0.4 CD8_TEM L2
ENSG00000132485 ZRANB2 226464 sc-eQTL 1.47e-01 0.152 0.105 0.4 CD8_TEM L2
ENSG00000197568 HHLA3 952948 sc-eQTL 7.20e-01 0.0347 0.0968 0.4 CD8_TEM L2
ENSG00000116761 CTH 896535 sc-eQTL 4.00e-01 -0.0638 0.0757 0.398 MAIT L2
ENSG00000118454 ANKRD13C 953019 sc-eQTL 1.40e-03 -0.266 0.082 0.398 MAIT L2
ENSG00000132485 ZRANB2 226464 sc-eQTL 9.39e-01 -0.00694 0.0911 0.398 MAIT L2
ENSG00000197568 HHLA3 952948 sc-eQTL 3.69e-01 0.0733 0.0814 0.398 MAIT L2
ENSG00000118454 ANKRD13C 953019 sc-eQTL 5.80e-01 0.0533 0.0962 0.398 NK_CD56bright L2
ENSG00000132485 ZRANB2 226464 sc-eQTL 4.22e-01 0.0702 0.0873 0.398 NK_CD56bright L2
ENSG00000197568 HHLA3 952948 sc-eQTL 8.27e-01 0.0203 0.0925 0.398 NK_CD56bright L2
ENSG00000118454 ANKRD13C 953019 sc-eQTL 5.41e-01 0.0483 0.0788 0.401 NK_CD56dim L2
ENSG00000132485 ZRANB2 226464 sc-eQTL 8.68e-02 0.132 0.077 0.401 NK_CD56dim L2
ENSG00000197568 HHLA3 952948 sc-eQTL 9.24e-01 -0.00886 0.0931 0.401 NK_CD56dim L2
ENSG00000118454 ANKRD13C 953019 sc-eQTL 5.88e-01 -0.0544 0.1 0.393 NK_HLA L2
ENSG00000132485 ZRANB2 226464 sc-eQTL 9.10e-02 0.164 0.0966 0.393 NK_HLA L2
ENSG00000197568 HHLA3 952948 sc-eQTL 1.83e-01 -0.131 0.0978 0.393 NK_HLA L2
ENSG00000118454 ANKRD13C 953019 sc-eQTL 3.48e-01 -0.0845 0.0899 0.401 NK_cytokine L2
ENSG00000132485 ZRANB2 226464 sc-eQTL 4.01e-01 -0.0701 0.0833 0.401 NK_cytokine L2
ENSG00000197568 HHLA3 952948 sc-eQTL 7.22e-01 0.0311 0.0875 0.401 NK_cytokine L2
ENSG00000118454 ANKRD13C 953019 sc-eQTL 1.90e-01 -0.143 0.109 0.419 PB L2
ENSG00000132485 ZRANB2 226464 sc-eQTL 4.10e-01 0.0636 0.0769 0.419 PB L2
ENSG00000197568 HHLA3 952948 sc-eQTL 8.10e-01 -0.025 0.103 0.419 PB L2
ENSG00000116761 CTH 896535 sc-eQTL 2.15e-01 0.0885 0.0712 0.4 Pro_T L2
ENSG00000118454 ANKRD13C 953019 sc-eQTL 2.61e-01 -0.103 0.0914 0.4 Pro_T L2
ENSG00000132485 ZRANB2 226464 sc-eQTL 5.15e-01 0.0577 0.0884 0.4 Pro_T L2
ENSG00000197568 HHLA3 952948 sc-eQTL 9.69e-01 0.00348 0.0909 0.4 Pro_T L2
ENSG00000116761 CTH 896535 sc-eQTL 2.33e-01 0.0761 0.0637 0.402 Treg L2
ENSG00000118454 ANKRD13C 953019 sc-eQTL 4.59e-01 0.0621 0.0838 0.402 Treg L2
ENSG00000132485 ZRANB2 226464 sc-eQTL 5.37e-02 0.167 0.086 0.402 Treg L2
ENSG00000197568 HHLA3 952948 sc-eQTL 3.62e-01 -0.0845 0.0926 0.402 Treg L2
ENSG00000116761 CTH 896535 sc-eQTL 5.52e-01 0.0515 0.0864 0.39 cDC L2
ENSG00000118454 ANKRD13C 953019 sc-eQTL 4.99e-01 0.0684 0.101 0.39 cDC L2
ENSG00000132485 ZRANB2 226464 sc-eQTL 2.95e-01 0.104 0.0991 0.39 cDC L2
ENSG00000172260 NEGR1 -974786 sc-eQTL 8.10e-01 -0.0176 0.073 0.39 cDC L2
ENSG00000197568 HHLA3 952948 sc-eQTL 6.89e-01 0.037 0.0924 0.39 cDC L2
ENSG00000116761 CTH 896535 sc-eQTL 3.46e-01 0.0681 0.0721 0.402 cMono_IL1B L2
ENSG00000118454 ANKRD13C 953019 sc-eQTL 7.46e-01 -0.0277 0.0855 0.402 cMono_IL1B L2
ENSG00000132485 ZRANB2 226464 sc-eQTL 3.15e-01 0.0774 0.0768 0.402 cMono_IL1B L2
ENSG00000116761 CTH 896535 sc-eQTL 1.35e-01 0.122 0.0814 0.402 cMono_S100A L2
ENSG00000118454 ANKRD13C 953019 sc-eQTL 4.03e-01 -0.0804 0.0959 0.402 cMono_S100A L2
ENSG00000132485 ZRANB2 226464 sc-eQTL 8.40e-01 0.0165 0.0818 0.402 cMono_S100A L2
ENSG00000116761 CTH 896535 sc-eQTL 7.62e-02 0.188 0.105 0.403 gdT L2
ENSG00000118454 ANKRD13C 953019 sc-eQTL 9.54e-01 -0.00663 0.115 0.403 gdT L2
ENSG00000132485 ZRANB2 226464 sc-eQTL 4.95e-01 0.0765 0.112 0.403 gdT L2
ENSG00000197568 HHLA3 952948 sc-eQTL 6.89e-02 0.195 0.106 0.403 gdT L2
ENSG00000116761 CTH 896535 sc-eQTL 6.18e-01 0.0356 0.0713 0.4 intMono L2
ENSG00000118454 ANKRD13C 953019 sc-eQTL 9.05e-01 0.011 0.0929 0.4 intMono L2
ENSG00000132485 ZRANB2 226464 sc-eQTL 5.65e-01 0.0538 0.0935 0.4 intMono L2
ENSG00000116761 CTH 896535 sc-eQTL 5.15e-01 -0.0475 0.0729 0.391 ncMono L2
ENSG00000118454 ANKRD13C 953019 sc-eQTL 5.85e-01 -0.0449 0.0822 0.391 ncMono L2
ENSG00000132485 ZRANB2 226464 sc-eQTL 8.43e-01 0.0173 0.087 0.391 ncMono L2
ENSG00000116761 CTH 896535 sc-eQTL 7.97e-01 0.021 0.0814 0.381 pDC L2
ENSG00000118454 ANKRD13C 953019 sc-eQTL 8.04e-01 -0.0267 0.107 0.381 pDC L2
ENSG00000132485 ZRANB2 226464 sc-eQTL 5.83e-01 -0.0491 0.0892 0.381 pDC L2
ENSG00000172260 NEGR1 -974786 sc-eQTL 3.40e-01 -0.0897 0.0937 0.381 pDC L2
ENSG00000197568 HHLA3 952948 sc-eQTL 8.51e-01 0.0178 0.0944 0.381 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000118454 ANKRD13C 953019 sc-eQTL 3.84e-01 -0.0735 0.0842 0.402 B_Memory LOneK1K
ENSG00000132485 ZRANB2 226464 sc-eQTL 8.42e-01 0.017 0.0853 0.402 B_Memory LOneK1K
ENSG00000197568 HHLA3 952948 sc-eQTL 8.60e-01 0.0163 0.0925 0.402 B_Memory LOneK1K
ENSG00000118454 ANKRD13C 953019 sc-eQTL 7.97e-01 0.0194 0.0754 0.402 B_Naive LOneK1K
ENSG00000132485 ZRANB2 226464 sc-eQTL 3.26e-01 0.0689 0.0701 0.402 B_Naive LOneK1K
ENSG00000197568 HHLA3 952948 sc-eQTL 2.15e-01 0.105 0.0844 0.402 B_Naive LOneK1K
ENSG00000116761 CTH 896535 sc-eQTL 1.90e-01 0.0908 0.069 0.402 CD14_Mono LOneK1K
ENSG00000118454 ANKRD13C 953019 sc-eQTL 6.67e-01 -0.038 0.0881 0.402 CD14_Mono LOneK1K
ENSG00000132485 ZRANB2 226464 sc-eQTL 6.07e-01 0.0367 0.0713 0.402 CD14_Mono LOneK1K
ENSG00000116761 CTH 896535 sc-eQTL 8.67e-01 -0.0114 0.0682 0.403 CD16_Mono LOneK1K
ENSG00000118454 ANKRD13C 953019 sc-eQTL 8.40e-01 -0.0171 0.0844 0.403 CD16_Mono LOneK1K
ENSG00000132485 ZRANB2 226464 sc-eQTL 6.95e-01 0.0316 0.0807 0.403 CD16_Mono LOneK1K
ENSG00000118454 ANKRD13C 953019 sc-eQTL 8.66e-01 0.0119 0.0703 0.401 NK_CD56dim LOneK1K
ENSG00000132485 ZRANB2 226464 sc-eQTL 4.08e-01 0.0592 0.0713 0.401 NK_CD56dim LOneK1K
ENSG00000197568 HHLA3 952948 sc-eQTL 8.24e-01 -0.019 0.0857 0.401 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000172260 NEGR1 -974786 eQTL 2.22e-02 0.0709 0.031 0.0 0.0 0.356

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000172260 NEGR1 -974786 1.29e-06 9.19e-07 2.95e-07 5.11e-07 1.07e-07 2.16e-07 6.09e-07 9.07e-08 4.3e-07 2.01e-07 1.35e-06 3.61e-07 1.35e-06 2.76e-07 5.5e-07 2.89e-07 7.77e-07 5.45e-07 2.25e-07 7.84e-08 2.54e-07 5.69e-07 5.81e-07 1.94e-07 1.47e-06 2.46e-07 2.94e-07 1.97e-07 3.88e-07 9.21e-07 4.55e-07 3.68e-08 4.49e-08 2.17e-07 3.67e-07 4.47e-07 8.52e-08 6.98e-08 5.59e-08 8.06e-08 5.41e-08 2.82e-06 5.65e-08 1.08e-08 7.93e-08 9.49e-09 1.2e-07 3.79e-09 4.79e-08