Genes within 1Mb (chr1:70288182:A:G):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066557 LRRC40 82603 sc-eQTL 8.73e-01 0.0341 0.213 0.05 CD8_TEM L2
ENSG00000116754 SRSF11 82500 sc-eQTL 8.91e-01 -0.0273 0.199 0.05 CD8_TEM L2
ENSG00000116761 CTH -123036 sc-eQTL 1.50e-02 0.464 0.189 0.05 CD8_TEM L2
ENSG00000118454 ANKRD13C -66552 sc-eQTL 3.41e-01 -0.211 0.221 0.05 CD8_TEM L2
ENSG00000132485 ZRANB2 -793107 sc-eQTL 1.73e-01 0.311 0.228 0.05 CD8_TEM L2
ENSG00000197568 HHLA3 -66623 sc-eQTL 5.25e-01 0.134 0.21 0.05 CD8_TEM L2
ENSG00000066557 LRRC40 82603 sc-eQTL 9.56e-01 -0.012 0.218 0.051 NK_CD56bright L2
ENSG00000116754 SRSF11 82500 sc-eQTL 9.17e-02 0.324 0.191 0.051 NK_CD56bright L2
ENSG00000118454 ANKRD13C -66552 sc-eQTL 1.13e-01 -0.342 0.215 0.051 NK_CD56bright L2
ENSG00000132485 ZRANB2 -793107 sc-eQTL 4.00e-01 -0.165 0.196 0.051 NK_CD56bright L2
ENSG00000197568 HHLA3 -66623 sc-eQTL 6.08e-01 0.107 0.208 0.051 NK_CD56bright L2
ENSG00000066557 LRRC40 82603 sc-eQTL 3.23e-01 0.25 0.252 0.052 PB L2
ENSG00000116754 SRSF11 82500 sc-eQTL 6.38e-01 -0.107 0.227 0.052 PB L2
ENSG00000118454 ANKRD13C -66552 sc-eQTL 6.38e-01 0.121 0.257 0.052 PB L2
ENSG00000132485 ZRANB2 -793107 sc-eQTL 4.59e-01 0.134 0.181 0.052 PB L2
ENSG00000197568 HHLA3 -66623 sc-eQTL 9.72e-01 -0.00849 0.243 0.052 PB L2
ENSG00000066557 LRRC40 82603 sc-eQTL 6.56e-01 -0.0919 0.206 0.05 Pro_T L2
ENSG00000116754 SRSF11 82500 sc-eQTL 1.25e-01 0.273 0.177 0.05 Pro_T L2
ENSG00000116761 CTH -123036 sc-eQTL 2.30e-01 -0.195 0.162 0.05 Pro_T L2
ENSG00000118454 ANKRD13C -66552 sc-eQTL 7.72e-01 -0.0603 0.208 0.05 Pro_T L2
ENSG00000132485 ZRANB2 -793107 sc-eQTL 5.66e-01 -0.115 0.201 0.05 Pro_T L2
ENSG00000197568 HHLA3 -66623 sc-eQTL 4.08e-01 -0.171 0.206 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000033122 LRRC7 719921 eQTL 0.00813 -0.253 0.0953 0.0 0.0 0.0476
ENSG00000116761 CTH -123036 eQTL 4.6e-10 0.448 0.0711 0.0 0.0 0.0476


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000033122 LRRC7 719921 3.53e-07 1.67e-07 6.41e-08 2.31e-07 1.07e-07 8.4e-08 2.5e-07 6.2e-08 1.89e-07 1.05e-07 1.86e-07 1.52e-07 2.55e-07 8.44e-08 6.53e-08 1.06e-07 5.57e-08 2.21e-07 7.11e-08 6.16e-08 1.33e-07 1.89e-07 1.75e-07 4.15e-08 2.36e-07 1.65e-07 1.29e-07 1.36e-07 1.4e-07 1.38e-07 1.26e-07 4.77e-08 4.27e-08 1.02e-07 6.35e-08 4.6e-08 4.47e-08 7.51e-08 6.45e-08 7.65e-08 5.04e-08 1.63e-07 3.25e-08 1.09e-08 3.71e-08 6.83e-09 7.13e-08 2.2e-09 4.47e-08
ENSG00000116761 CTH -123036 4.18e-06 4.74e-06 8.34e-07 2.56e-06 1.59e-06 1.39e-06 4.29e-06 9.99e-07 4.95e-06 2.44e-06 4.91e-06 3.37e-06 7.2e-06 2.43e-06 1.35e-06 3.71e-06 1.92e-06 3.53e-06 1.45e-06 1.19e-06 3.12e-06 4.74e-06 4.22e-06 1.46e-06 5.89e-06 1.95e-06 2.51e-06 1.73e-06 4.58e-06 4.23e-06 2.54e-06 4.38e-07 5.37e-07 1.65e-06 2.23e-06 1.18e-06 9.91e-07 4.58e-07 8.11e-07 5.32e-07 7.64e-07 5.58e-06 3.65e-07 1.59e-07 6.98e-07 7.26e-07 9.74e-07 5.83e-07 4.68e-07