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Genes within 1Mb (chr1:69907349:G:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066557 LRRC40 -298230 sc-eQTL 6.49e-01 0.0886 0.194 0.052 DC L1
ENSG00000116754 SRSF11 -298333 sc-eQTL 5.12e-01 -0.0852 0.13 0.052 DC L1
ENSG00000116761 CTH -503869 sc-eQTL 1.61e-01 -0.235 0.167 0.052 DC L1
ENSG00000118454 ANKRD13C -447385 sc-eQTL 5.98e-01 -0.0936 0.177 0.052 DC L1
ENSG00000197568 HHLA3 -447456 sc-eQTL 8.48e-01 -0.0338 0.176 0.052 DC L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066557 LRRC40 -298230 sc-eQTL 3.42e-01 0.174 0.183 0.052 CD4_CTL L2
ENSG00000116754 SRSF11 -298333 sc-eQTL 1.07e-01 -0.307 0.189 0.052 CD4_CTL L2
ENSG00000116761 CTH -503869 sc-eQTL 2.95e-01 -0.167 0.159 0.052 CD4_CTL L2
ENSG00000118454 ANKRD13C -447385 sc-eQTL 5.57e-01 -0.103 0.176 0.052 CD4_CTL L2
ENSG00000197568 HHLA3 -447456 sc-eQTL 9.66e-01 0.00759 0.178 0.052 CD4_CTL L2
ENSG00000066557 LRRC40 -298230 sc-eQTL 4.54e-02 0.397 0.197 0.051 CD8_TCM L2
ENSG00000116754 SRSF11 -298333 sc-eQTL 8.84e-02 0.311 0.182 0.051 CD8_TCM L2
ENSG00000116761 CTH -503869 sc-eQTL 3.88e-01 0.158 0.182 0.051 CD8_TCM L2
ENSG00000118454 ANKRD13C -447385 sc-eQTL 3.47e-01 0.18 0.191 0.051 CD8_TCM L2
ENSG00000197568 HHLA3 -447456 sc-eQTL 2.02e-01 0.247 0.193 0.051 CD8_TCM L2
ENSG00000066557 LRRC40 -298230 sc-eQTL 1.92e-01 -0.251 0.192 0.053 CD8_TEM L2
ENSG00000116754 SRSF11 -298333 sc-eQTL 5.68e-01 0.103 0.179 0.053 CD8_TEM L2
ENSG00000116761 CTH -503869 sc-eQTL 3.77e-01 -0.153 0.173 0.053 CD8_TEM L2
ENSG00000118454 ANKRD13C -447385 sc-eQTL 9.55e-01 0.0112 0.199 0.053 CD8_TEM L2
ENSG00000197568 HHLA3 -447456 sc-eQTL 2.86e-01 0.202 0.189 0.053 CD8_TEM L2
ENSG00000066557 LRRC40 -298230 sc-eQTL 8.07e-01 -0.0481 0.196 0.05 NK_HLA L2
ENSG00000116754 SRSF11 -298333 sc-eQTL 5.26e-01 0.112 0.177 0.05 NK_HLA L2
ENSG00000118454 ANKRD13C -447385 sc-eQTL 4.38e-01 0.156 0.2 0.05 NK_HLA L2
ENSG00000197568 HHLA3 -447456 sc-eQTL 2.03e-01 -0.25 0.196 0.05 NK_HLA L2
ENSG00000066557 LRRC40 -298230 sc-eQTL 5.79e-01 -0.107 0.192 0.05 Pro_T L2
ENSG00000116754 SRSF11 -298333 sc-eQTL 4.39e-01 0.129 0.166 0.05 Pro_T L2
ENSG00000116761 CTH -503869 sc-eQTL 4.98e-01 0.103 0.151 0.05 Pro_T L2
ENSG00000118454 ANKRD13C -447385 sc-eQTL 5.46e-01 0.118 0.194 0.05 Pro_T L2
ENSG00000197568 HHLA3 -447456 sc-eQTL 1.95e-01 0.25 0.192 0.05 Pro_T L2
ENSG00000066557 LRRC40 -298230 sc-eQTL 9.32e-01 -0.0156 0.183 0.054 cDC L2
ENSG00000116754 SRSF11 -298333 sc-eQTL 3.36e-01 -0.132 0.136 0.054 cDC L2
ENSG00000116761 CTH -503869 sc-eQTL 4.39e-02 -0.333 0.164 0.054 cDC L2
ENSG00000118454 ANKRD13C -447385 sc-eQTL 5.32e-01 -0.121 0.194 0.054 cDC L2
ENSG00000197568 HHLA3 -447456 sc-eQTL 1.74e-01 -0.24 0.176 0.054 cDC L2
ENSG00000066557 LRRC40 -298230 sc-eQTL 9.02e-01 -0.0287 0.232 0.052 gdT L2
ENSG00000116754 SRSF11 -298333 sc-eQTL 1.18e-01 -0.344 0.219 0.052 gdT L2
ENSG00000116761 CTH -503869 sc-eQTL 4.13e-01 0.174 0.212 0.052 gdT L2
ENSG00000118454 ANKRD13C -447385 sc-eQTL 3.52e-01 -0.214 0.229 0.052 gdT L2
ENSG00000197568 HHLA3 -447456 sc-eQTL 8.88e-01 0.0304 0.215 0.052 gdT L2
ENSG00000066557 LRRC40 -298230 sc-eQTL 4.17e-01 0.151 0.185 0.051 intMono L2
ENSG00000116754 SRSF11 -298333 sc-eQTL 6.88e-01 0.0651 0.162 0.051 intMono L2
ENSG00000116761 CTH -503869 sc-eQTL 5.67e-01 -0.083 0.145 0.051 intMono L2
ENSG00000118454 ANKRD13C -447385 sc-eQTL 8.81e-01 -0.0282 0.189 0.051 intMono L2
ENSG00000066557 LRRC40 -298230 sc-eQTL 9.63e-01 0.0101 0.216 0.054 pDC L2
ENSG00000116754 SRSF11 -298333 sc-eQTL 5.11e-01 0.12 0.182 0.054 pDC L2
ENSG00000116761 CTH -503869 sc-eQTL 3.89e-01 0.143 0.166 0.054 pDC L2
ENSG00000118454 ANKRD13C -447385 sc-eQTL 9.50e-01 -0.0137 0.22 0.054 pDC L2
ENSG00000197568 HHLA3 -447456 sc-eQTL 2.72e-01 0.212 0.192 0.054 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116761 CTH -503869 eQTL 0.000313 0.237 0.0654 0.0 0.0 0.0569

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116754 \N -298333 1.32e-06 9.83e-07 2.72e-07 7.35e-07 1.56e-07 4.35e-07 1.32e-06 3.34e-07 1.2e-06 3.76e-07 1.48e-06 5.79e-07 1.98e-06 2.54e-07 4.12e-07 6.94e-07 7.73e-07 5.5e-07 4.54e-07 5.33e-07 2.97e-07 1.01e-06 8.27e-07 6.02e-07 2.01e-06 2.94e-07 6.53e-07 5.33e-07 1.04e-06 1.32e-06 5.88e-07 3.82e-08 1.31e-07 5.45e-07 4.07e-07 4.12e-07 3.77e-07 1.38e-07 2.19e-07 7.62e-08 1.85e-07 1.53e-06 7.53e-08 1.24e-08 1.59e-07 7.09e-08 1.83e-07 8.41e-08 5.39e-08
ENSG00000116761 CTH -503869 6.8e-07 3.35e-07 6.57e-08 2.92e-07 1.08e-07 1.25e-07 4.09e-07 7.12e-08 2.66e-07 1.39e-07 3.97e-07 2.22e-07 5.39e-07 9.15e-08 8.45e-08 1.26e-07 8.64e-08 2.9e-07 8e-08 8.31e-08 1.39e-07 2.3e-07 2.33e-07 7.22e-08 4.54e-07 1.76e-07 1.57e-07 1.52e-07 1.87e-07 3.71e-07 1.93e-07 4.51e-08 3.8e-08 1.15e-07 1.33e-07 5.14e-08 5.96e-08 7.1e-08 4.9e-08 8.06e-08 4.89e-08 2.91e-07 3.46e-08 1.43e-08 4.99e-08 1.01e-08 7.52e-08 0.0 4.83e-08