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Genes within 1Mb (chr1:69793632:CT:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066557 LRRC40 -411947 sc-eQTL 6.04e-02 -0.42 0.222 0.051 B_Activated L2
ENSG00000116754 SRSF11 -412050 sc-eQTL 4.53e-01 -0.178 0.237 0.051 B_Activated L2
ENSG00000118454 ANKRD13C -561102 sc-eQTL 9.10e-01 0.027 0.239 0.051 B_Activated L2
ENSG00000197568 HHLA3 -561173 sc-eQTL 1.96e-01 -0.259 0.2 0.051 B_Activated L2
ENSG00000066557 LRRC40 -411947 sc-eQTL 6.36e-01 0.0966 0.204 0.052 CD4_CTL L2
ENSG00000116754 SRSF11 -412050 sc-eQTL 7.15e-01 0.0775 0.212 0.052 CD4_CTL L2
ENSG00000116761 CTH -617586 sc-eQTL 9.09e-02 -0.299 0.176 0.052 CD4_CTL L2
ENSG00000118454 ANKRD13C -561102 sc-eQTL 1.86e-01 0.258 0.195 0.052 CD4_CTL L2
ENSG00000197568 HHLA3 -561173 sc-eQTL 8.57e-01 -0.0357 0.198 0.052 CD4_CTL L2
ENSG00000066557 LRRC40 -411947 sc-eQTL 6.15e-01 0.11 0.219 0.051 CD8_TCM L2
ENSG00000116754 SRSF11 -412050 sc-eQTL 3.79e-01 0.177 0.201 0.051 CD8_TCM L2
ENSG00000116761 CTH -617586 sc-eQTL 8.01e-01 0.0507 0.201 0.051 CD8_TCM L2
ENSG00000118454 ANKRD13C -561102 sc-eQTL 1.87e-01 0.277 0.209 0.051 CD8_TCM L2
ENSG00000197568 HHLA3 -561173 sc-eQTL 8.35e-01 0.0444 0.213 0.051 CD8_TCM L2
ENSG00000066557 LRRC40 -411947 sc-eQTL 2.45e-01 -0.247 0.212 0.05 CD8_TEM L2
ENSG00000116754 SRSF11 -412050 sc-eQTL 1.67e-01 -0.274 0.198 0.05 CD8_TEM L2
ENSG00000116761 CTH -617586 sc-eQTL 1.60e-01 0.268 0.19 0.05 CD8_TEM L2
ENSG00000118454 ANKRD13C -561102 sc-eQTL 4.54e-01 -0.165 0.22 0.05 CD8_TEM L2
ENSG00000197568 HHLA3 -561173 sc-eQTL 3.53e-01 0.195 0.209 0.05 CD8_TEM L2
ENSG00000066557 LRRC40 -411947 sc-eQTL 7.14e-01 -0.0772 0.21 0.05 Pro_T L2
ENSG00000116754 SRSF11 -412050 sc-eQTL 9.83e-01 0.00397 0.182 0.05 Pro_T L2
ENSG00000116761 CTH -617586 sc-eQTL 2.90e-01 -0.175 0.165 0.05 Pro_T L2
ENSG00000118454 ANKRD13C -561102 sc-eQTL 1.53e-02 -0.512 0.21 0.05 Pro_T L2
ENSG00000197568 HHLA3 -561173 sc-eQTL 1.18e-01 0.329 0.209 0.05 Pro_T L2
ENSG00000066557 LRRC40 -411947 sc-eQTL 5.88e-01 -0.114 0.211 0.051 cDC L2
ENSG00000116754 SRSF11 -412050 sc-eQTL 8.48e-02 0.271 0.157 0.051 cDC L2
ENSG00000116761 CTH -617586 sc-eQTL 5.29e-01 -0.121 0.191 0.051 cDC L2
ENSG00000118454 ANKRD13C -561102 sc-eQTL 5.40e-01 -0.137 0.224 0.051 cDC L2
ENSG00000197568 HHLA3 -561173 sc-eQTL 6.33e-01 0.0976 0.204 0.051 cDC L2
ENSG00000066557 LRRC40 -411947 sc-eQTL 4.16e-01 -0.197 0.242 0.058 gdT L2
ENSG00000116754 SRSF11 -412050 sc-eQTL 9.09e-01 0.0265 0.231 0.058 gdT L2
ENSG00000116761 CTH -617586 sc-eQTL 6.30e-01 -0.107 0.222 0.058 gdT L2
ENSG00000118454 ANKRD13C -561102 sc-eQTL 9.05e-01 -0.0287 0.24 0.058 gdT L2
ENSG00000197568 HHLA3 -561173 sc-eQTL 4.57e-01 -0.167 0.224 0.058 gdT L2
ENSG00000066557 LRRC40 -411947 sc-eQTL 6.17e-01 -0.111 0.221 0.056 pDC L2
ENSG00000116754 SRSF11 -412050 sc-eQTL 6.73e-01 0.0791 0.187 0.056 pDC L2
ENSG00000116761 CTH -617586 sc-eQTL 9.00e-01 0.0216 0.171 0.056 pDC L2
ENSG00000118454 ANKRD13C -561102 sc-eQTL 2.27e-01 -0.272 0.224 0.056 pDC L2
ENSG00000197568 HHLA3 -561173 sc-eQTL 7.41e-02 0.352 0.196 0.056 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000066557 \N -411947 3.16e-06 3.22e-06 4.23e-07 2.05e-06 4.41e-07 7.9e-07 2.84e-06 3.38e-07 1.72e-06 5.93e-07 1.9e-06 7.84e-07 3.5e-06 2.74e-07 5.75e-07 1.05e-06 1.57e-06 1.62e-06 9.61e-07 1.13e-06 1.34e-06 1.96e-06 3.17e-06 5.78e-07 3.3e-06 1.02e-06 1.02e-06 1.06e-06 2.66e-06 2.95e-06 8.43e-07 5.69e-08 2.75e-07 8.91e-07 9.89e-07 4.82e-07 6.81e-07 2.94e-07 4.97e-07 2.04e-07 1.09e-07 6.85e-06 1.39e-07 1.11e-08 1.78e-07 3.62e-07 2.38e-07 3.25e-09 1.35e-07