logo

Genes within 1Mb (chr1:69381854:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066557 LRRC40 -823725 sc-eQTL 2.44e-01 -0.132 0.113 0.872 B L1
ENSG00000116754 SRSF11 -823828 sc-eQTL 4.80e-01 -0.0621 0.0879 0.872 B L1
ENSG00000118454 ANKRD13C -972880 sc-eQTL 5.01e-01 -0.069 0.102 0.872 B L1
ENSG00000197568 HHLA3 -972951 sc-eQTL 2.04e-01 0.143 0.113 0.872 B L1
ENSG00000066557 LRRC40 -823725 sc-eQTL 5.01e-01 0.063 0.0933 0.872 CD4T L1
ENSG00000116754 SRSF11 -823828 sc-eQTL 8.21e-01 -0.0166 0.0734 0.872 CD4T L1
ENSG00000118454 ANKRD13C -972880 sc-eQTL 1.31e-01 -0.103 0.0677 0.872 CD4T L1
ENSG00000197568 HHLA3 -972951 sc-eQTL 4.95e-01 0.0646 0.0944 0.872 CD4T L1
ENSG00000066557 LRRC40 -823725 sc-eQTL 7.09e-01 -0.0392 0.105 0.872 CD8T L1
ENSG00000116754 SRSF11 -823828 sc-eQTL 8.61e-02 0.15 0.087 0.872 CD8T L1
ENSG00000118454 ANKRD13C -972880 sc-eQTL 7.07e-01 0.0312 0.0827 0.872 CD8T L1
ENSG00000197568 HHLA3 -972951 sc-eQTL 4.97e-01 -0.0667 0.098 0.872 CD8T L1
ENSG00000066557 LRRC40 -823725 sc-eQTL 9.19e-03 -0.352 0.134 0.872 DC L1
ENSG00000116754 SRSF11 -823828 sc-eQTL 5.98e-01 -0.048 0.091 0.872 DC L1
ENSG00000118454 ANKRD13C -972880 sc-eQTL 4.39e-01 -0.0962 0.124 0.872 DC L1
ENSG00000197568 HHLA3 -972951 sc-eQTL 7.48e-01 -0.0396 0.123 0.872 DC L1
ENSG00000066557 LRRC40 -823725 sc-eQTL 1.35e-01 -0.183 0.122 0.872 Mono L1
ENSG00000116754 SRSF11 -823828 sc-eQTL 4.16e-01 0.058 0.0711 0.872 Mono L1
ENSG00000118454 ANKRD13C -972880 sc-eQTL 4.81e-01 -0.0814 0.115 0.872 Mono L1
ENSG00000066557 LRRC40 -823725 sc-eQTL 5.08e-01 0.0713 0.107 0.873 NK L1
ENSG00000116754 SRSF11 -823828 sc-eQTL 7.41e-01 0.0314 0.0949 0.873 NK L1
ENSG00000118454 ANKRD13C -972880 sc-eQTL 8.47e-01 -0.0184 0.0953 0.873 NK L1
ENSG00000197568 HHLA3 -972951 sc-eQTL 2.97e-01 -0.125 0.119 0.873 NK L1
ENSG00000024526 DEPDC1 884633 sc-eQTL 1.35e-01 -0.0903 0.0601 0.872 Other_T L1
ENSG00000066557 LRRC40 -823725 sc-eQTL 3.68e-02 -0.263 0.125 0.872 Other_T L1
ENSG00000116754 SRSF11 -823828 sc-eQTL 1.07e-02 0.252 0.0981 0.872 Other_T L1
ENSG00000118454 ANKRD13C -972880 sc-eQTL 4.06e-01 0.0999 0.12 0.872 Other_T L1
ENSG00000197568 HHLA3 -972951 sc-eQTL 1.10e-01 0.203 0.126 0.872 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066557 LRRC40 -823725 sc-eQTL 4.12e-01 -0.114 0.139 0.875 B_Activated L2
ENSG00000116754 SRSF11 -823828 sc-eQTL 2.07e-01 -0.186 0.147 0.875 B_Activated L2
ENSG00000118454 ANKRD13C -972880 sc-eQTL 4.33e-01 -0.117 0.148 0.875 B_Activated L2
ENSG00000197568 HHLA3 -972951 sc-eQTL 3.32e-03 0.362 0.122 0.875 B_Activated L2
ENSG00000066557 LRRC40 -823725 sc-eQTL 4.78e-01 0.0924 0.13 0.871 B_Intermediate L2
ENSG00000116754 SRSF11 -823828 sc-eQTL 4.83e-01 -0.0778 0.111 0.871 B_Intermediate L2
ENSG00000118454 ANKRD13C -972880 sc-eQTL 5.90e-01 -0.068 0.126 0.871 B_Intermediate L2
ENSG00000197568 HHLA3 -972951 sc-eQTL 7.36e-01 0.0446 0.132 0.871 B_Intermediate L2
ENSG00000066557 LRRC40 -823725 sc-eQTL 6.77e-01 0.0562 0.135 0.871 B_Memory L2
ENSG00000116754 SRSF11 -823828 sc-eQTL 1.15e-01 -0.187 0.119 0.871 B_Memory L2
ENSG00000118454 ANKRD13C -972880 sc-eQTL 9.94e-01 0.000893 0.11 0.871 B_Memory L2
ENSG00000197568 HHLA3 -972951 sc-eQTL 3.98e-01 0.107 0.126 0.871 B_Memory L2
ENSG00000066557 LRRC40 -823725 sc-eQTL 4.30e-01 -0.1 0.126 0.872 B_Naive1 L2
ENSG00000116754 SRSF11 -823828 sc-eQTL 8.88e-01 -0.0142 0.1 0.872 B_Naive1 L2
ENSG00000118454 ANKRD13C -972880 sc-eQTL 7.17e-01 0.0389 0.107 0.872 B_Naive1 L2
ENSG00000197568 HHLA3 -972951 sc-eQTL 4.62e-01 0.0902 0.122 0.872 B_Naive1 L2
ENSG00000066557 LRRC40 -823725 sc-eQTL 3.60e-01 -0.12 0.131 0.871 B_Naive2 L2
ENSG00000116754 SRSF11 -823828 sc-eQTL 7.62e-01 0.0352 0.116 0.871 B_Naive2 L2
ENSG00000118454 ANKRD13C -972880 sc-eQTL 3.77e-01 0.12 0.136 0.871 B_Naive2 L2
ENSG00000197568 HHLA3 -972951 sc-eQTL 5.00e-01 0.0841 0.124 0.871 B_Naive2 L2
ENSG00000066557 LRRC40 -823725 sc-eQTL 7.15e-01 -0.0505 0.138 0.88 CD4_CTL L2
ENSG00000116754 SRSF11 -823828 sc-eQTL 6.47e-01 -0.0658 0.143 0.88 CD4_CTL L2
ENSG00000118454 ANKRD13C -972880 sc-eQTL 3.83e-02 -0.273 0.131 0.88 CD4_CTL L2
ENSG00000197568 HHLA3 -972951 sc-eQTL 1.82e-01 -0.179 0.133 0.88 CD4_CTL L2
ENSG00000066557 LRRC40 -823725 sc-eQTL 6.50e-01 0.0477 0.105 0.872 CD4_Naive L2
ENSG00000116754 SRSF11 -823828 sc-eQTL 5.00e-01 -0.0513 0.0761 0.872 CD4_Naive L2
ENSG00000118454 ANKRD13C -972880 sc-eQTL 2.28e-01 -0.0968 0.0801 0.872 CD4_Naive L2
ENSG00000197568 HHLA3 -972951 sc-eQTL 5.09e-02 0.196 0.0996 0.872 CD4_Naive L2
ENSG00000066557 LRRC40 -823725 sc-eQTL 7.61e-01 0.0384 0.126 0.872 CD4_TCM L2
ENSG00000116754 SRSF11 -823828 sc-eQTL 5.92e-01 -0.0499 0.0931 0.872 CD4_TCM L2
ENSG00000118454 ANKRD13C -972880 sc-eQTL 1.69e-01 -0.133 0.0964 0.872 CD4_TCM L2
ENSG00000197568 HHLA3 -972951 sc-eQTL 8.65e-01 -0.0215 0.127 0.872 CD4_TCM L2
ENSG00000066557 LRRC40 -823725 sc-eQTL 8.70e-01 0.0214 0.13 0.872 CD4_TEM L2
ENSG00000116754 SRSF11 -823828 sc-eQTL 4.91e-01 -0.0783 0.114 0.872 CD4_TEM L2
ENSG00000118454 ANKRD13C -972880 sc-eQTL 3.81e-01 -0.101 0.115 0.872 CD4_TEM L2
ENSG00000197568 HHLA3 -972951 sc-eQTL 5.79e-01 0.0725 0.131 0.872 CD4_TEM L2
ENSG00000066557 LRRC40 -823725 sc-eQTL 1.79e-02 -0.272 0.114 0.872 CD8_CTL L2
ENSG00000116754 SRSF11 -823828 sc-eQTL 3.19e-02 0.234 0.108 0.872 CD8_CTL L2
ENSG00000118454 ANKRD13C -972880 sc-eQTL 7.64e-01 0.0374 0.125 0.872 CD8_CTL L2
ENSG00000197568 HHLA3 -972951 sc-eQTL 6.66e-01 0.0537 0.124 0.872 CD8_CTL L2
ENSG00000066557 LRRC40 -823725 sc-eQTL 1.35e-01 -0.199 0.133 0.872 CD8_Naive L2
ENSG00000116754 SRSF11 -823828 sc-eQTL 2.01e-01 -0.127 0.0988 0.872 CD8_Naive L2
ENSG00000118454 ANKRD13C -972880 sc-eQTL 3.01e-01 -0.1 0.0968 0.872 CD8_Naive L2
ENSG00000197568 HHLA3 -972951 sc-eQTL 9.29e-01 -0.00992 0.111 0.872 CD8_Naive L2
ENSG00000066557 LRRC40 -823725 sc-eQTL 4.67e-01 0.102 0.14 0.88 CD8_TCM L2
ENSG00000116754 SRSF11 -823828 sc-eQTL 3.42e-01 -0.123 0.129 0.88 CD8_TCM L2
ENSG00000118454 ANKRD13C -972880 sc-eQTL 1.69e-01 0.186 0.134 0.88 CD8_TCM L2
ENSG00000197568 HHLA3 -972951 sc-eQTL 7.66e-02 -0.242 0.136 0.88 CD8_TCM L2
ENSG00000066557 LRRC40 -823725 sc-eQTL 4.32e-01 0.105 0.134 0.877 CD8_TEM L2
ENSG00000116754 SRSF11 -823828 sc-eQTL 5.65e-02 0.238 0.124 0.877 CD8_TEM L2
ENSG00000118454 ANKRD13C -972880 sc-eQTL 5.91e-01 0.0748 0.139 0.877 CD8_TEM L2
ENSG00000197568 HHLA3 -972951 sc-eQTL 6.84e-01 0.0538 0.132 0.877 CD8_TEM L2
ENSG00000024526 DEPDC1 884633 sc-eQTL 5.37e-01 -0.0295 0.0477 0.874 MAIT L2
ENSG00000066557 LRRC40 -823725 sc-eQTL 4.18e-02 0.269 0.131 0.874 MAIT L2
ENSG00000116754 SRSF11 -823828 sc-eQTL 7.04e-02 0.235 0.129 0.874 MAIT L2
ENSG00000118454 ANKRD13C -972880 sc-eQTL 8.76e-01 0.019 0.122 0.874 MAIT L2
ENSG00000197568 HHLA3 -972951 sc-eQTL 8.72e-02 0.202 0.118 0.874 MAIT L2
ENSG00000066557 LRRC40 -823725 sc-eQTL 6.76e-01 0.059 0.141 0.873 NK_CD56bright L2
ENSG00000116754 SRSF11 -823828 sc-eQTL 3.59e-01 0.114 0.124 0.873 NK_CD56bright L2
ENSG00000118454 ANKRD13C -972880 sc-eQTL 6.84e-01 -0.057 0.14 0.873 NK_CD56bright L2
ENSG00000197568 HHLA3 -972951 sc-eQTL 6.06e-01 0.0695 0.134 0.873 NK_CD56bright L2
ENSG00000066557 LRRC40 -823725 sc-eQTL 5.08e-01 0.0754 0.114 0.875 NK_CD56dim L2
ENSG00000116754 SRSF11 -823828 sc-eQTL 8.04e-01 0.0275 0.111 0.875 NK_CD56dim L2
ENSG00000118454 ANKRD13C -972880 sc-eQTL 7.63e-01 -0.0336 0.111 0.875 NK_CD56dim L2
ENSG00000197568 HHLA3 -972951 sc-eQTL 4.90e-01 -0.0904 0.131 0.875 NK_CD56dim L2
ENSG00000066557 LRRC40 -823725 sc-eQTL 6.30e-01 -0.0638 0.132 0.874 NK_HLA L2
ENSG00000116754 SRSF11 -823828 sc-eQTL 6.93e-01 -0.0472 0.119 0.874 NK_HLA L2
ENSG00000118454 ANKRD13C -972880 sc-eQTL 7.64e-02 0.239 0.134 0.874 NK_HLA L2
ENSG00000197568 HHLA3 -972951 sc-eQTL 6.14e-01 -0.0669 0.132 0.874 NK_HLA L2
ENSG00000066557 LRRC40 -823725 sc-eQTL 1.39e-01 -0.194 0.131 0.875 NK_cytokine L2
ENSG00000116754 SRSF11 -823828 sc-eQTL 5.30e-02 0.217 0.111 0.875 NK_cytokine L2
ENSG00000118454 ANKRD13C -972880 sc-eQTL 4.20e-01 -0.102 0.126 0.875 NK_cytokine L2
ENSG00000197568 HHLA3 -972951 sc-eQTL 9.05e-01 -0.0146 0.123 0.875 NK_cytokine L2
ENSG00000066557 LRRC40 -823725 sc-eQTL 4.08e-01 0.118 0.142 0.841 PB L2
ENSG00000116754 SRSF11 -823828 sc-eQTL 1.94e-01 0.166 0.127 0.841 PB L2
ENSG00000118454 ANKRD13C -972880 sc-eQTL 7.06e-01 -0.0548 0.145 0.841 PB L2
ENSG00000197568 HHLA3 -972951 sc-eQTL 1.22e-01 0.211 0.136 0.841 PB L2
ENSG00000024526 DEPDC1 884633 sc-eQTL 8.21e-01 -0.0177 0.078 0.87 Pro_T L2
ENSG00000066557 LRRC40 -823725 sc-eQTL 5.29e-02 -0.245 0.126 0.87 Pro_T L2
ENSG00000116754 SRSF11 -823828 sc-eQTL 5.42e-01 0.067 0.11 0.87 Pro_T L2
ENSG00000118454 ANKRD13C -972880 sc-eQTL 1.25e-01 -0.197 0.128 0.87 Pro_T L2
ENSG00000197568 HHLA3 -972951 sc-eQTL 9.29e-01 -0.0114 0.127 0.87 Pro_T L2
ENSG00000066557 LRRC40 -823725 sc-eQTL 7.55e-01 -0.0415 0.133 0.872 Treg L2
ENSG00000116754 SRSF11 -823828 sc-eQTL 1.14e-01 0.175 0.11 0.872 Treg L2
ENSG00000118454 ANKRD13C -972880 sc-eQTL 4.65e-01 -0.0853 0.116 0.872 Treg L2
ENSG00000197568 HHLA3 -972951 sc-eQTL 8.96e-01 -0.0168 0.129 0.872 Treg L2
ENSG00000066557 LRRC40 -823725 sc-eQTL 1.40e-01 -0.2 0.135 0.871 cDC L2
ENSG00000116754 SRSF11 -823828 sc-eQTL 3.07e-01 -0.104 0.101 0.871 cDC L2
ENSG00000118454 ANKRD13C -972880 sc-eQTL 5.95e-01 0.0766 0.144 0.871 cDC L2
ENSG00000197568 HHLA3 -972951 sc-eQTL 5.40e-01 0.0807 0.131 0.871 cDC L2
ENSG00000066557 LRRC40 -823725 sc-eQTL 1.94e-02 -0.29 0.123 0.872 cMono_IL1B L2
ENSG00000116754 SRSF11 -823828 sc-eQTL 6.38e-01 0.039 0.0826 0.872 cMono_IL1B L2
ENSG00000118454 ANKRD13C -972880 sc-eQTL 5.17e-01 -0.0789 0.122 0.872 cMono_IL1B L2
ENSG00000066557 LRRC40 -823725 sc-eQTL 9.47e-01 0.00892 0.134 0.872 cMono_S100A L2
ENSG00000116754 SRSF11 -823828 sc-eQTL 3.25e-01 0.0942 0.0955 0.872 cMono_S100A L2
ENSG00000118454 ANKRD13C -972880 sc-eQTL 8.97e-01 -0.0177 0.137 0.872 cMono_S100A L2
ENSG00000066557 LRRC40 -823725 sc-eQTL 8.88e-01 -0.0247 0.176 0.888 gdT L2
ENSG00000116754 SRSF11 -823828 sc-eQTL 1.34e-01 0.25 0.166 0.888 gdT L2
ENSG00000118454 ANKRD13C -972880 sc-eQTL 1.33e-01 0.261 0.173 0.888 gdT L2
ENSG00000197568 HHLA3 -972951 sc-eQTL 8.42e-03 0.425 0.159 0.888 gdT L2
ENSG00000066557 LRRC40 -823725 sc-eQTL 1.58e-01 -0.183 0.129 0.871 intMono L2
ENSG00000116754 SRSF11 -823828 sc-eQTL 4.74e-01 0.0815 0.114 0.871 intMono L2
ENSG00000118454 ANKRD13C -972880 sc-eQTL 5.59e-01 -0.0773 0.132 0.871 intMono L2
ENSG00000066557 LRRC40 -823725 sc-eQTL 2.73e-01 0.146 0.133 0.871 ncMono L2
ENSG00000116754 SRSF11 -823828 sc-eQTL 8.12e-01 0.0245 0.103 0.871 ncMono L2
ENSG00000118454 ANKRD13C -972880 sc-eQTL 5.96e-01 0.0614 0.116 0.871 ncMono L2
ENSG00000066557 LRRC40 -823725 sc-eQTL 2.02e-01 -0.189 0.147 0.87 pDC L2
ENSG00000116754 SRSF11 -823828 sc-eQTL 9.56e-02 -0.208 0.124 0.87 pDC L2
ENSG00000118454 ANKRD13C -972880 sc-eQTL 2.57e-02 -0.334 0.148 0.87 pDC L2
ENSG00000197568 HHLA3 -972951 sc-eQTL 7.29e-01 -0.046 0.132 0.87 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066557 LRRC40 -823725 sc-eQTL 4.57e-01 0.0932 0.125 0.872 B_Memory LOneK1K
ENSG00000116754 SRSF11 -823828 sc-eQTL 6.70e-02 -0.201 0.109 0.872 B_Memory LOneK1K
ENSG00000118454 ANKRD13C -972880 sc-eQTL 8.04e-01 -0.0293 0.118 0.872 B_Memory LOneK1K
ENSG00000197568 HHLA3 -972951 sc-eQTL 4.77e-01 0.0922 0.129 0.872 B_Memory LOneK1K
ENSG00000066557 LRRC40 -823725 sc-eQTL 1.49e-01 -0.18 0.124 0.872 B_Naive LOneK1K
ENSG00000116754 SRSF11 -823828 sc-eQTL 8.12e-01 -0.0253 0.106 0.872 B_Naive LOneK1K
ENSG00000118454 ANKRD13C -972880 sc-eQTL 6.80e-01 -0.0442 0.107 0.872 B_Naive LOneK1K
ENSG00000197568 HHLA3 -972951 sc-eQTL 3.80e-01 0.106 0.12 0.872 B_Naive LOneK1K
ENSG00000066557 LRRC40 -823725 sc-eQTL 9.50e-02 -0.208 0.124 0.872 CD14_Mono LOneK1K
ENSG00000116754 SRSF11 -823828 sc-eQTL 4.71e-01 0.054 0.0748 0.872 CD14_Mono LOneK1K
ENSG00000118454 ANKRD13C -972880 sc-eQTL 6.15e-01 -0.0631 0.125 0.872 CD14_Mono LOneK1K
ENSG00000066557 LRRC40 -823725 sc-eQTL 6.68e-01 0.0543 0.127 0.873 CD16_Mono LOneK1K
ENSG00000116754 SRSF11 -823828 sc-eQTL 5.82e-01 0.054 0.0979 0.873 CD16_Mono LOneK1K
ENSG00000118454 ANKRD13C -972880 sc-eQTL 5.59e-01 -0.0694 0.118 0.873 CD16_Mono LOneK1K
ENSG00000066557 LRRC40 -823725 sc-eQTL 9.98e-01 0.000344 0.113 0.875 NK_CD56dim LOneK1K
ENSG00000116754 SRSF11 -823828 sc-eQTL 6.38e-01 0.0462 0.098 0.875 NK_CD56dim LOneK1K
ENSG00000118454 ANKRD13C -972880 sc-eQTL 8.99e-01 -0.0126 0.0995 0.875 NK_CD56dim LOneK1K
ENSG00000197568 HHLA3 -972951 sc-eQTL 3.38e-01 -0.116 0.121 0.875 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066557 LRRC40 -823725 eQTL 0.0114 0.0581 0.0229 0.0 0.0 0.116
ENSG00000197568 HHLA3 -972951 eQTL 0.0495 0.0756 0.0384 0.0 0.0 0.116

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina