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Genes within 1Mb (chr1:69373540:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066557 LRRC40 -832039 sc-eQTL 2.44e-01 -0.132 0.113 0.872 B L1
ENSG00000116754 SRSF11 -832142 sc-eQTL 4.80e-01 -0.0621 0.0879 0.872 B L1
ENSG00000118454 ANKRD13C -981194 sc-eQTL 5.01e-01 -0.069 0.102 0.872 B L1
ENSG00000197568 HHLA3 -981265 sc-eQTL 2.04e-01 0.143 0.113 0.872 B L1
ENSG00000066557 LRRC40 -832039 sc-eQTL 5.01e-01 0.063 0.0933 0.872 CD4T L1
ENSG00000116754 SRSF11 -832142 sc-eQTL 8.21e-01 -0.0166 0.0734 0.872 CD4T L1
ENSG00000118454 ANKRD13C -981194 sc-eQTL 1.31e-01 -0.103 0.0677 0.872 CD4T L1
ENSG00000197568 HHLA3 -981265 sc-eQTL 4.95e-01 0.0646 0.0944 0.872 CD4T L1
ENSG00000066557 LRRC40 -832039 sc-eQTL 7.09e-01 -0.0392 0.105 0.872 CD8T L1
ENSG00000116754 SRSF11 -832142 sc-eQTL 8.61e-02 0.15 0.087 0.872 CD8T L1
ENSG00000118454 ANKRD13C -981194 sc-eQTL 7.07e-01 0.0312 0.0827 0.872 CD8T L1
ENSG00000197568 HHLA3 -981265 sc-eQTL 4.97e-01 -0.0667 0.098 0.872 CD8T L1
ENSG00000066557 LRRC40 -832039 sc-eQTL 9.19e-03 -0.352 0.134 0.872 DC L1
ENSG00000116754 SRSF11 -832142 sc-eQTL 5.98e-01 -0.048 0.091 0.872 DC L1
ENSG00000118454 ANKRD13C -981194 sc-eQTL 4.39e-01 -0.0962 0.124 0.872 DC L1
ENSG00000197568 HHLA3 -981265 sc-eQTL 7.48e-01 -0.0396 0.123 0.872 DC L1
ENSG00000066557 LRRC40 -832039 sc-eQTL 1.35e-01 -0.183 0.122 0.872 Mono L1
ENSG00000116754 SRSF11 -832142 sc-eQTL 4.16e-01 0.058 0.0711 0.872 Mono L1
ENSG00000118454 ANKRD13C -981194 sc-eQTL 4.81e-01 -0.0814 0.115 0.872 Mono L1
ENSG00000066557 LRRC40 -832039 sc-eQTL 5.08e-01 0.0713 0.107 0.873 NK L1
ENSG00000116754 SRSF11 -832142 sc-eQTL 7.41e-01 0.0314 0.0949 0.873 NK L1
ENSG00000118454 ANKRD13C -981194 sc-eQTL 8.47e-01 -0.0184 0.0953 0.873 NK L1
ENSG00000197568 HHLA3 -981265 sc-eQTL 2.97e-01 -0.125 0.119 0.873 NK L1
ENSG00000024526 DEPDC1 876319 sc-eQTL 1.35e-01 -0.0903 0.0601 0.872 Other_T L1
ENSG00000066557 LRRC40 -832039 sc-eQTL 3.68e-02 -0.263 0.125 0.872 Other_T L1
ENSG00000116754 SRSF11 -832142 sc-eQTL 1.07e-02 0.252 0.0981 0.872 Other_T L1
ENSG00000118454 ANKRD13C -981194 sc-eQTL 4.06e-01 0.0999 0.12 0.872 Other_T L1
ENSG00000197568 HHLA3 -981265 sc-eQTL 1.10e-01 0.203 0.126 0.872 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066557 LRRC40 -832039 sc-eQTL 4.12e-01 -0.114 0.139 0.875 B_Activated L2
ENSG00000116754 SRSF11 -832142 sc-eQTL 2.07e-01 -0.186 0.147 0.875 B_Activated L2
ENSG00000118454 ANKRD13C -981194 sc-eQTL 4.33e-01 -0.117 0.148 0.875 B_Activated L2
ENSG00000197568 HHLA3 -981265 sc-eQTL 3.32e-03 0.362 0.122 0.875 B_Activated L2
ENSG00000066557 LRRC40 -832039 sc-eQTL 4.78e-01 0.0924 0.13 0.871 B_Intermediate L2
ENSG00000116754 SRSF11 -832142 sc-eQTL 4.83e-01 -0.0778 0.111 0.871 B_Intermediate L2
ENSG00000118454 ANKRD13C -981194 sc-eQTL 5.90e-01 -0.068 0.126 0.871 B_Intermediate L2
ENSG00000197568 HHLA3 -981265 sc-eQTL 7.36e-01 0.0446 0.132 0.871 B_Intermediate L2
ENSG00000066557 LRRC40 -832039 sc-eQTL 6.77e-01 0.0562 0.135 0.871 B_Memory L2
ENSG00000116754 SRSF11 -832142 sc-eQTL 1.15e-01 -0.187 0.119 0.871 B_Memory L2
ENSG00000118454 ANKRD13C -981194 sc-eQTL 9.94e-01 0.000893 0.11 0.871 B_Memory L2
ENSG00000197568 HHLA3 -981265 sc-eQTL 3.98e-01 0.107 0.126 0.871 B_Memory L2
ENSG00000066557 LRRC40 -832039 sc-eQTL 4.30e-01 -0.1 0.126 0.872 B_Naive1 L2
ENSG00000116754 SRSF11 -832142 sc-eQTL 8.88e-01 -0.0142 0.1 0.872 B_Naive1 L2
ENSG00000118454 ANKRD13C -981194 sc-eQTL 7.17e-01 0.0389 0.107 0.872 B_Naive1 L2
ENSG00000197568 HHLA3 -981265 sc-eQTL 4.62e-01 0.0902 0.122 0.872 B_Naive1 L2
ENSG00000066557 LRRC40 -832039 sc-eQTL 3.60e-01 -0.12 0.131 0.871 B_Naive2 L2
ENSG00000116754 SRSF11 -832142 sc-eQTL 7.62e-01 0.0352 0.116 0.871 B_Naive2 L2
ENSG00000118454 ANKRD13C -981194 sc-eQTL 3.77e-01 0.12 0.136 0.871 B_Naive2 L2
ENSG00000197568 HHLA3 -981265 sc-eQTL 5.00e-01 0.0841 0.124 0.871 B_Naive2 L2
ENSG00000066557 LRRC40 -832039 sc-eQTL 7.15e-01 -0.0505 0.138 0.88 CD4_CTL L2
ENSG00000116754 SRSF11 -832142 sc-eQTL 6.47e-01 -0.0658 0.143 0.88 CD4_CTL L2
ENSG00000118454 ANKRD13C -981194 sc-eQTL 3.83e-02 -0.273 0.131 0.88 CD4_CTL L2
ENSG00000197568 HHLA3 -981265 sc-eQTL 1.82e-01 -0.179 0.133 0.88 CD4_CTL L2
ENSG00000066557 LRRC40 -832039 sc-eQTL 6.50e-01 0.0477 0.105 0.872 CD4_Naive L2
ENSG00000116754 SRSF11 -832142 sc-eQTL 5.00e-01 -0.0513 0.0761 0.872 CD4_Naive L2
ENSG00000118454 ANKRD13C -981194 sc-eQTL 2.28e-01 -0.0968 0.0801 0.872 CD4_Naive L2
ENSG00000197568 HHLA3 -981265 sc-eQTL 5.09e-02 0.196 0.0996 0.872 CD4_Naive L2
ENSG00000066557 LRRC40 -832039 sc-eQTL 7.61e-01 0.0384 0.126 0.872 CD4_TCM L2
ENSG00000116754 SRSF11 -832142 sc-eQTL 5.92e-01 -0.0499 0.0931 0.872 CD4_TCM L2
ENSG00000118454 ANKRD13C -981194 sc-eQTL 1.69e-01 -0.133 0.0964 0.872 CD4_TCM L2
ENSG00000197568 HHLA3 -981265 sc-eQTL 8.65e-01 -0.0215 0.127 0.872 CD4_TCM L2
ENSG00000066557 LRRC40 -832039 sc-eQTL 8.70e-01 0.0214 0.13 0.872 CD4_TEM L2
ENSG00000116754 SRSF11 -832142 sc-eQTL 4.91e-01 -0.0783 0.114 0.872 CD4_TEM L2
ENSG00000118454 ANKRD13C -981194 sc-eQTL 3.81e-01 -0.101 0.115 0.872 CD4_TEM L2
ENSG00000197568 HHLA3 -981265 sc-eQTL 5.79e-01 0.0725 0.131 0.872 CD4_TEM L2
ENSG00000066557 LRRC40 -832039 sc-eQTL 1.79e-02 -0.272 0.114 0.872 CD8_CTL L2
ENSG00000116754 SRSF11 -832142 sc-eQTL 3.19e-02 0.234 0.108 0.872 CD8_CTL L2
ENSG00000118454 ANKRD13C -981194 sc-eQTL 7.64e-01 0.0374 0.125 0.872 CD8_CTL L2
ENSG00000197568 HHLA3 -981265 sc-eQTL 6.66e-01 0.0537 0.124 0.872 CD8_CTL L2
ENSG00000066557 LRRC40 -832039 sc-eQTL 1.35e-01 -0.199 0.133 0.872 CD8_Naive L2
ENSG00000116754 SRSF11 -832142 sc-eQTL 2.01e-01 -0.127 0.0988 0.872 CD8_Naive L2
ENSG00000118454 ANKRD13C -981194 sc-eQTL 3.01e-01 -0.1 0.0968 0.872 CD8_Naive L2
ENSG00000197568 HHLA3 -981265 sc-eQTL 9.29e-01 -0.00992 0.111 0.872 CD8_Naive L2
ENSG00000066557 LRRC40 -832039 sc-eQTL 4.67e-01 0.102 0.14 0.88 CD8_TCM L2
ENSG00000116754 SRSF11 -832142 sc-eQTL 3.42e-01 -0.123 0.129 0.88 CD8_TCM L2
ENSG00000118454 ANKRD13C -981194 sc-eQTL 1.69e-01 0.186 0.134 0.88 CD8_TCM L2
ENSG00000197568 HHLA3 -981265 sc-eQTL 7.66e-02 -0.242 0.136 0.88 CD8_TCM L2
ENSG00000066557 LRRC40 -832039 sc-eQTL 4.32e-01 0.105 0.134 0.877 CD8_TEM L2
ENSG00000116754 SRSF11 -832142 sc-eQTL 5.65e-02 0.238 0.124 0.877 CD8_TEM L2
ENSG00000118454 ANKRD13C -981194 sc-eQTL 5.91e-01 0.0748 0.139 0.877 CD8_TEM L2
ENSG00000197568 HHLA3 -981265 sc-eQTL 6.84e-01 0.0538 0.132 0.877 CD8_TEM L2
ENSG00000024526 DEPDC1 876319 sc-eQTL 5.37e-01 -0.0295 0.0477 0.874 MAIT L2
ENSG00000066557 LRRC40 -832039 sc-eQTL 4.18e-02 0.269 0.131 0.874 MAIT L2
ENSG00000116754 SRSF11 -832142 sc-eQTL 7.04e-02 0.235 0.129 0.874 MAIT L2
ENSG00000118454 ANKRD13C -981194 sc-eQTL 8.76e-01 0.019 0.122 0.874 MAIT L2
ENSG00000197568 HHLA3 -981265 sc-eQTL 8.72e-02 0.202 0.118 0.874 MAIT L2
ENSG00000066557 LRRC40 -832039 sc-eQTL 6.76e-01 0.059 0.141 0.873 NK_CD56bright L2
ENSG00000116754 SRSF11 -832142 sc-eQTL 3.59e-01 0.114 0.124 0.873 NK_CD56bright L2
ENSG00000118454 ANKRD13C -981194 sc-eQTL 6.84e-01 -0.057 0.14 0.873 NK_CD56bright L2
ENSG00000197568 HHLA3 -981265 sc-eQTL 6.06e-01 0.0695 0.134 0.873 NK_CD56bright L2
ENSG00000066557 LRRC40 -832039 sc-eQTL 5.08e-01 0.0754 0.114 0.875 NK_CD56dim L2
ENSG00000116754 SRSF11 -832142 sc-eQTL 8.04e-01 0.0275 0.111 0.875 NK_CD56dim L2
ENSG00000118454 ANKRD13C -981194 sc-eQTL 7.63e-01 -0.0336 0.111 0.875 NK_CD56dim L2
ENSG00000197568 HHLA3 -981265 sc-eQTL 4.90e-01 -0.0904 0.131 0.875 NK_CD56dim L2
ENSG00000066557 LRRC40 -832039 sc-eQTL 6.30e-01 -0.0638 0.132 0.874 NK_HLA L2
ENSG00000116754 SRSF11 -832142 sc-eQTL 6.93e-01 -0.0472 0.119 0.874 NK_HLA L2
ENSG00000118454 ANKRD13C -981194 sc-eQTL 7.64e-02 0.239 0.134 0.874 NK_HLA L2
ENSG00000197568 HHLA3 -981265 sc-eQTL 6.14e-01 -0.0669 0.132 0.874 NK_HLA L2
ENSG00000066557 LRRC40 -832039 sc-eQTL 1.39e-01 -0.194 0.131 0.875 NK_cytokine L2
ENSG00000116754 SRSF11 -832142 sc-eQTL 5.30e-02 0.217 0.111 0.875 NK_cytokine L2
ENSG00000118454 ANKRD13C -981194 sc-eQTL 4.20e-01 -0.102 0.126 0.875 NK_cytokine L2
ENSG00000197568 HHLA3 -981265 sc-eQTL 9.05e-01 -0.0146 0.123 0.875 NK_cytokine L2
ENSG00000066557 LRRC40 -832039 sc-eQTL 4.08e-01 0.118 0.142 0.841 PB L2
ENSG00000116754 SRSF11 -832142 sc-eQTL 1.94e-01 0.166 0.127 0.841 PB L2
ENSG00000118454 ANKRD13C -981194 sc-eQTL 7.06e-01 -0.0548 0.145 0.841 PB L2
ENSG00000197568 HHLA3 -981265 sc-eQTL 1.22e-01 0.211 0.136 0.841 PB L2
ENSG00000024526 DEPDC1 876319 sc-eQTL 8.21e-01 -0.0177 0.078 0.87 Pro_T L2
ENSG00000066557 LRRC40 -832039 sc-eQTL 5.29e-02 -0.245 0.126 0.87 Pro_T L2
ENSG00000116754 SRSF11 -832142 sc-eQTL 5.42e-01 0.067 0.11 0.87 Pro_T L2
ENSG00000118454 ANKRD13C -981194 sc-eQTL 1.25e-01 -0.197 0.128 0.87 Pro_T L2
ENSG00000197568 HHLA3 -981265 sc-eQTL 9.29e-01 -0.0114 0.127 0.87 Pro_T L2
ENSG00000066557 LRRC40 -832039 sc-eQTL 7.55e-01 -0.0415 0.133 0.872 Treg L2
ENSG00000116754 SRSF11 -832142 sc-eQTL 1.14e-01 0.175 0.11 0.872 Treg L2
ENSG00000118454 ANKRD13C -981194 sc-eQTL 4.65e-01 -0.0853 0.116 0.872 Treg L2
ENSG00000197568 HHLA3 -981265 sc-eQTL 8.96e-01 -0.0168 0.129 0.872 Treg L2
ENSG00000066557 LRRC40 -832039 sc-eQTL 1.40e-01 -0.2 0.135 0.871 cDC L2
ENSG00000116754 SRSF11 -832142 sc-eQTL 3.07e-01 -0.104 0.101 0.871 cDC L2
ENSG00000118454 ANKRD13C -981194 sc-eQTL 5.95e-01 0.0766 0.144 0.871 cDC L2
ENSG00000197568 HHLA3 -981265 sc-eQTL 5.40e-01 0.0807 0.131 0.871 cDC L2
ENSG00000066557 LRRC40 -832039 sc-eQTL 1.94e-02 -0.29 0.123 0.872 cMono_IL1B L2
ENSG00000116754 SRSF11 -832142 sc-eQTL 6.38e-01 0.039 0.0826 0.872 cMono_IL1B L2
ENSG00000118454 ANKRD13C -981194 sc-eQTL 5.17e-01 -0.0789 0.122 0.872 cMono_IL1B L2
ENSG00000066557 LRRC40 -832039 sc-eQTL 9.47e-01 0.00892 0.134 0.872 cMono_S100A L2
ENSG00000116754 SRSF11 -832142 sc-eQTL 3.25e-01 0.0942 0.0955 0.872 cMono_S100A L2
ENSG00000118454 ANKRD13C -981194 sc-eQTL 8.97e-01 -0.0177 0.137 0.872 cMono_S100A L2
ENSG00000066557 LRRC40 -832039 sc-eQTL 8.88e-01 -0.0247 0.176 0.888 gdT L2
ENSG00000116754 SRSF11 -832142 sc-eQTL 1.34e-01 0.25 0.166 0.888 gdT L2
ENSG00000118454 ANKRD13C -981194 sc-eQTL 1.33e-01 0.261 0.173 0.888 gdT L2
ENSG00000197568 HHLA3 -981265 sc-eQTL 8.42e-03 0.425 0.159 0.888 gdT L2
ENSG00000066557 LRRC40 -832039 sc-eQTL 1.58e-01 -0.183 0.129 0.871 intMono L2
ENSG00000116754 SRSF11 -832142 sc-eQTL 4.74e-01 0.0815 0.114 0.871 intMono L2
ENSG00000118454 ANKRD13C -981194 sc-eQTL 5.59e-01 -0.0773 0.132 0.871 intMono L2
ENSG00000066557 LRRC40 -832039 sc-eQTL 2.73e-01 0.146 0.133 0.871 ncMono L2
ENSG00000116754 SRSF11 -832142 sc-eQTL 8.12e-01 0.0245 0.103 0.871 ncMono L2
ENSG00000118454 ANKRD13C -981194 sc-eQTL 5.96e-01 0.0614 0.116 0.871 ncMono L2
ENSG00000066557 LRRC40 -832039 sc-eQTL 2.02e-01 -0.189 0.147 0.87 pDC L2
ENSG00000116754 SRSF11 -832142 sc-eQTL 9.56e-02 -0.208 0.124 0.87 pDC L2
ENSG00000118454 ANKRD13C -981194 sc-eQTL 2.57e-02 -0.334 0.148 0.87 pDC L2
ENSG00000197568 HHLA3 -981265 sc-eQTL 7.29e-01 -0.046 0.132 0.87 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066557 LRRC40 -832039 sc-eQTL 4.57e-01 0.0932 0.125 0.872 B_Memory LOneK1K
ENSG00000116754 SRSF11 -832142 sc-eQTL 6.70e-02 -0.201 0.109 0.872 B_Memory LOneK1K
ENSG00000118454 ANKRD13C -981194 sc-eQTL 8.04e-01 -0.0293 0.118 0.872 B_Memory LOneK1K
ENSG00000197568 HHLA3 -981265 sc-eQTL 4.77e-01 0.0922 0.129 0.872 B_Memory LOneK1K
ENSG00000066557 LRRC40 -832039 sc-eQTL 1.49e-01 -0.18 0.124 0.872 B_Naive LOneK1K
ENSG00000116754 SRSF11 -832142 sc-eQTL 8.12e-01 -0.0253 0.106 0.872 B_Naive LOneK1K
ENSG00000118454 ANKRD13C -981194 sc-eQTL 6.80e-01 -0.0442 0.107 0.872 B_Naive LOneK1K
ENSG00000197568 HHLA3 -981265 sc-eQTL 3.80e-01 0.106 0.12 0.872 B_Naive LOneK1K
ENSG00000066557 LRRC40 -832039 sc-eQTL 9.50e-02 -0.208 0.124 0.872 CD14_Mono LOneK1K
ENSG00000116754 SRSF11 -832142 sc-eQTL 4.71e-01 0.054 0.0748 0.872 CD14_Mono LOneK1K
ENSG00000118454 ANKRD13C -981194 sc-eQTL 6.15e-01 -0.0631 0.125 0.872 CD14_Mono LOneK1K
ENSG00000066557 LRRC40 -832039 sc-eQTL 6.68e-01 0.0543 0.127 0.873 CD16_Mono LOneK1K
ENSG00000116754 SRSF11 -832142 sc-eQTL 5.82e-01 0.054 0.0979 0.873 CD16_Mono LOneK1K
ENSG00000118454 ANKRD13C -981194 sc-eQTL 5.59e-01 -0.0694 0.118 0.873 CD16_Mono LOneK1K
ENSG00000066557 LRRC40 -832039 sc-eQTL 9.98e-01 0.000344 0.113 0.875 NK_CD56dim LOneK1K
ENSG00000116754 SRSF11 -832142 sc-eQTL 6.38e-01 0.0462 0.098 0.875 NK_CD56dim LOneK1K
ENSG00000118454 ANKRD13C -981194 sc-eQTL 8.99e-01 -0.0126 0.0995 0.875 NK_CD56dim LOneK1K
ENSG00000197568 HHLA3 -981265 sc-eQTL 3.38e-01 -0.116 0.121 0.875 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066557 LRRC40 -832039 eQTL 0.00668 0.0621 0.0229 0.0 0.0 0.118
ENSG00000197568 HHLA3 -981265 eQTL 0.049 0.0756 0.0384 0.0 0.0 0.118

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000066557 LRRC40 -832039 3.71e-07 1.67e-07 6.99e-08 2.24e-07 1.03e-07 8.75e-08 2.95e-07 5.62e-08 1.98e-07 1.11e-07 3.25e-07 1.48e-07 3.6e-07 8.66e-08 1.01e-07 9.48e-08 4.25e-08 2.04e-07 7.18e-08 5.48e-08 1.26e-07 1.9e-07 1.81e-07 3.49e-08 3.27e-07 1.26e-07 1.22e-07 1.47e-07 1.37e-07 1.36e-07 1.59e-07 3.99e-08 3.38e-08 9.52e-08 6.25e-08 3.18e-08 5.8e-08 8.61e-08 6.3e-08 4.08e-08 5.65e-08 2.8e-07 5.39e-08 1.43e-08 3.34e-08 6.83e-09 9.96e-08 0.0 4.99e-08