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Genes within 1Mb (chr1:69216127:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066557 LRRC40 -989452 sc-eQTL 7.17e-01 0.0308 0.085 0.34 B L1
ENSG00000116754 SRSF11 -989555 sc-eQTL 9.77e-01 0.00193 0.0659 0.34 B L1
ENSG00000066557 LRRC40 -989452 sc-eQTL 9.59e-01 0.00372 0.0718 0.34 CD4T L1
ENSG00000116754 SRSF11 -989555 sc-eQTL 8.27e-01 0.0123 0.0564 0.34 CD4T L1
ENSG00000066557 LRRC40 -989452 sc-eQTL 4.94e-01 0.0549 0.0802 0.34 CD8T L1
ENSG00000116754 SRSF11 -989555 sc-eQTL 7.00e-01 0.0258 0.0669 0.34 CD8T L1
ENSG00000066557 LRRC40 -989452 sc-eQTL 9.29e-01 0.00899 0.101 0.34 DC L1
ENSG00000116729 WLS 983007 sc-eQTL 4.99e-01 -0.0574 0.0846 0.34 DC L1
ENSG00000116754 SRSF11 -989555 sc-eQTL 7.66e-01 -0.0202 0.0678 0.34 DC L1
ENSG00000066557 LRRC40 -989452 sc-eQTL 5.40e-01 0.056 0.0914 0.34 Mono L1
ENSG00000116729 WLS 983007 sc-eQTL 6.17e-01 -0.0388 0.0775 0.34 Mono L1
ENSG00000116754 SRSF11 -989555 sc-eQTL 1.33e-01 0.0794 0.0527 0.34 Mono L1
ENSG00000066557 LRRC40 -989452 sc-eQTL 7.26e-01 -0.028 0.08 0.341 NK L1
ENSG00000116754 SRSF11 -989555 sc-eQTL 1.91e-01 -0.0923 0.0703 0.341 NK L1
ENSG00000024526 DEPDC1 718906 sc-eQTL 5.85e-01 -0.0242 0.0443 0.34 Other_T L1
ENSG00000066557 LRRC40 -989452 sc-eQTL 1.13e-01 -0.147 0.0924 0.34 Other_T L1
ENSG00000116754 SRSF11 -989555 sc-eQTL 8.36e-01 -0.0151 0.073 0.34 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066557 LRRC40 -989452 sc-eQTL 9.22e-02 0.181 0.107 0.324 B_Activated L2
ENSG00000116754 SRSF11 -989555 sc-eQTL 9.00e-01 -0.0143 0.114 0.324 B_Activated L2
ENSG00000066557 LRRC40 -989452 sc-eQTL 5.33e-01 -0.0616 0.0986 0.341 B_Intermediate L2
ENSG00000116754 SRSF11 -989555 sc-eQTL 3.58e-01 0.0772 0.0839 0.341 B_Intermediate L2
ENSG00000066557 LRRC40 -989452 sc-eQTL 9.74e-01 -0.00336 0.104 0.336 B_Memory L2
ENSG00000116754 SRSF11 -989555 sc-eQTL 2.81e-01 -0.0989 0.0916 0.336 B_Memory L2
ENSG00000066557 LRRC40 -989452 sc-eQTL 5.16e-01 0.062 0.0953 0.34 B_Naive1 L2
ENSG00000116754 SRSF11 -989555 sc-eQTL 1.54e-01 0.108 0.0754 0.34 B_Naive1 L2
ENSG00000066557 LRRC40 -989452 sc-eQTL 6.32e-01 0.0485 0.101 0.337 B_Naive2 L2
ENSG00000116754 SRSF11 -989555 sc-eQTL 2.22e-01 -0.109 0.0892 0.337 B_Naive2 L2
ENSG00000066557 LRRC40 -989452 sc-eQTL 4.58e-01 0.0725 0.0975 0.339 CD4_CTL L2
ENSG00000116754 SRSF11 -989555 sc-eQTL 4.74e-01 -0.0727 0.101 0.339 CD4_CTL L2
ENSG00000066557 LRRC40 -989452 sc-eQTL 9.20e-01 -0.00827 0.0819 0.34 CD4_Naive L2
ENSG00000116754 SRSF11 -989555 sc-eQTL 6.29e-01 -0.0287 0.0593 0.34 CD4_Naive L2
ENSG00000066557 LRRC40 -989452 sc-eQTL 2.20e-02 -0.216 0.0936 0.34 CD4_TCM L2
ENSG00000116754 SRSF11 -989555 sc-eQTL 4.01e-01 0.0588 0.0698 0.34 CD4_TCM L2
ENSG00000066557 LRRC40 -989452 sc-eQTL 3.62e-01 0.0876 0.0959 0.34 CD4_TEM L2
ENSG00000116754 SRSF11 -989555 sc-eQTL 2.38e-01 0.0989 0.0836 0.34 CD4_TEM L2
ENSG00000066557 LRRC40 -989452 sc-eQTL 8.88e-01 0.0123 0.0873 0.34 CD8_CTL L2
ENSG00000116754 SRSF11 -989555 sc-eQTL 8.28e-01 0.018 0.0827 0.34 CD8_CTL L2
ENSG00000066557 LRRC40 -989452 sc-eQTL 1.85e-01 0.132 0.099 0.34 CD8_Naive L2
ENSG00000116754 SRSF11 -989555 sc-eQTL 1.03e-01 0.12 0.0735 0.34 CD8_Naive L2
ENSG00000066557 LRRC40 -989452 sc-eQTL 7.76e-01 0.0306 0.107 0.331 CD8_TCM L2
ENSG00000116754 SRSF11 -989555 sc-eQTL 6.99e-01 -0.0383 0.0989 0.331 CD8_TCM L2
ENSG00000066557 LRRC40 -989452 sc-eQTL 9.05e-01 0.0116 0.0974 0.345 CD8_TEM L2
ENSG00000116754 SRSF11 -989555 sc-eQTL 4.29e-01 -0.072 0.0908 0.345 CD8_TEM L2
ENSG00000024526 DEPDC1 718906 sc-eQTL 6.88e-01 0.0139 0.0347 0.34 MAIT L2
ENSG00000066557 LRRC40 -989452 sc-eQTL 1.03e-01 -0.157 0.0958 0.34 MAIT L2
ENSG00000116754 SRSF11 -989555 sc-eQTL 2.82e-01 -0.102 0.0943 0.34 MAIT L2
ENSG00000066557 LRRC40 -989452 sc-eQTL 6.23e-01 0.0498 0.101 0.342 NK_CD56bright L2
ENSG00000116754 SRSF11 -989555 sc-eQTL 6.76e-01 -0.0374 0.0893 0.342 NK_CD56bright L2
ENSG00000066557 LRRC40 -989452 sc-eQTL 2.01e-01 -0.109 0.085 0.341 NK_CD56dim L2
ENSG00000116754 SRSF11 -989555 sc-eQTL 7.58e-01 -0.0256 0.083 0.341 NK_CD56dim L2
ENSG00000066557 LRRC40 -989452 sc-eQTL 3.54e-01 -0.0918 0.0987 0.34 NK_HLA L2
ENSG00000116754 SRSF11 -989555 sc-eQTL 7.72e-01 -0.0259 0.0892 0.34 NK_HLA L2
ENSG00000066557 LRRC40 -989452 sc-eQTL 8.81e-01 0.0146 0.097 0.341 NK_cytokine L2
ENSG00000116754 SRSF11 -989555 sc-eQTL 5.97e-02 -0.156 0.0822 0.341 NK_cytokine L2
ENSG00000066557 LRRC40 -989452 sc-eQTL 7.24e-01 0.0423 0.12 0.337 PB L2
ENSG00000116754 SRSF11 -989555 sc-eQTL 7.44e-01 -0.0352 0.108 0.337 PB L2
ENSG00000024526 DEPDC1 718906 sc-eQTL 8.37e-01 0.0121 0.0587 0.341 Pro_T L2
ENSG00000066557 LRRC40 -989452 sc-eQTL 5.77e-01 -0.0533 0.0955 0.341 Pro_T L2
ENSG00000116754 SRSF11 -989555 sc-eQTL 8.17e-01 0.0191 0.0825 0.341 Pro_T L2
ENSG00000066557 LRRC40 -989452 sc-eQTL 1.25e-01 0.157 0.102 0.34 Treg L2
ENSG00000116754 SRSF11 -989555 sc-eQTL 1.22e-01 0.133 0.0853 0.34 Treg L2
ENSG00000066557 LRRC40 -989452 sc-eQTL 6.57e-01 -0.044 0.099 0.329 cDC L2
ENSG00000116729 WLS 983007 sc-eQTL 3.98e-01 -0.0762 0.0899 0.329 cDC L2
ENSG00000116754 SRSF11 -989555 sc-eQTL 8.32e-01 0.0157 0.0741 0.329 cDC L2
ENSG00000066557 LRRC40 -989452 sc-eQTL 8.41e-01 0.0185 0.0923 0.34 cMono_IL1B L2
ENSG00000116729 WLS 983007 sc-eQTL 5.76e-01 -0.0451 0.0804 0.34 cMono_IL1B L2
ENSG00000116754 SRSF11 -989555 sc-eQTL 2.29e-01 0.0734 0.0609 0.34 cMono_IL1B L2
ENSG00000066557 LRRC40 -989452 sc-eQTL 5.37e-01 -0.062 0.1 0.34 cMono_S100A L2
ENSG00000116729 WLS 983007 sc-eQTL 5.43e-01 -0.046 0.0756 0.34 cMono_S100A L2
ENSG00000116754 SRSF11 -989555 sc-eQTL 5.66e-02 0.136 0.071 0.34 cMono_S100A L2
ENSG00000066557 LRRC40 -989452 sc-eQTL 7.99e-01 -0.0321 0.125 0.324 gdT L2
ENSG00000116754 SRSF11 -989555 sc-eQTL 8.69e-01 -0.0197 0.119 0.324 gdT L2
ENSG00000066557 LRRC40 -989452 sc-eQTL 8.77e-01 0.0149 0.0961 0.34 intMono L2
ENSG00000116729 WLS 983007 sc-eQTL 4.13e-01 -0.0742 0.0905 0.34 intMono L2
ENSG00000116754 SRSF11 -989555 sc-eQTL 5.59e-01 -0.0491 0.0839 0.34 intMono L2
ENSG00000066557 LRRC40 -989452 sc-eQTL 5.29e-01 0.0634 0.1 0.337 ncMono L2
ENSG00000116729 WLS 983007 sc-eQTL 8.31e-01 0.0186 0.087 0.337 ncMono L2
ENSG00000116754 SRSF11 -989555 sc-eQTL 7.39e-01 0.0259 0.0775 0.337 ncMono L2
ENSG00000066557 LRRC40 -989452 sc-eQTL 5.77e-01 0.0627 0.112 0.325 pDC L2
ENSG00000116729 WLS 983007 sc-eQTL 9.02e-01 -0.0102 0.0827 0.325 pDC L2
ENSG00000116754 SRSF11 -989555 sc-eQTL 5.18e-01 -0.0615 0.0947 0.325 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066557 LRRC40 -989452 sc-eQTL 6.67e-01 0.0401 0.0932 0.34 B_Memory LOneK1K
ENSG00000116754 SRSF11 -989555 sc-eQTL 7.63e-01 -0.0247 0.0818 0.34 B_Memory LOneK1K
ENSG00000066557 LRRC40 -989452 sc-eQTL 5.91e-01 0.0506 0.0941 0.34 B_Naive LOneK1K
ENSG00000116754 SRSF11 -989555 sc-eQTL 4.81e-01 0.0563 0.0798 0.34 B_Naive LOneK1K
ENSG00000066557 LRRC40 -989452 sc-eQTL 9.47e-01 -0.0062 0.0924 0.34 CD14_Mono LOneK1K
ENSG00000116729 WLS 983007 sc-eQTL 5.33e-01 -0.0455 0.073 0.34 CD14_Mono LOneK1K
ENSG00000116754 SRSF11 -989555 sc-eQTL 7.71e-02 0.0977 0.055 0.34 CD14_Mono LOneK1K
ENSG00000066557 LRRC40 -989452 sc-eQTL 2.34e-01 0.114 0.0952 0.341 CD16_Mono LOneK1K
ENSG00000116729 WLS 983007 sc-eQTL 8.67e-01 -0.0152 0.0906 0.341 CD16_Mono LOneK1K
ENSG00000116754 SRSF11 -989555 sc-eQTL 8.70e-01 0.0121 0.0739 0.341 CD16_Mono LOneK1K
ENSG00000066557 LRRC40 -989452 sc-eQTL 4.54e-01 -0.0632 0.0843 0.341 NK_CD56dim LOneK1K
ENSG00000116754 SRSF11 -989555 sc-eQTL 2.56e-01 -0.0834 0.0732 0.341 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000033122 LRRC7 -352134 eQTL 0.0466 -0.083 0.0416 0.0 0.0 0.318

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000066557 \N -989452 2.66e-07 1.11e-07 3.56e-08 1.78e-07 9.02e-08 9.3e-08 1.38e-07 5.33e-08 1.41e-07 4.38e-08 1.6e-07 7.75e-08 1.33e-07 6.21e-08 5.55e-08 7.89e-08 4.48e-08 1.14e-07 5.19e-08 4.2e-08 1.04e-07 1.28e-07 1.26e-07 4.13e-08 1.33e-07 1.15e-07 1.12e-07 8.71e-08 1.02e-07 1.1e-07 9.73e-08 3.96e-08 3.09e-08 8.82e-08 8.93e-08 3.77e-08 5.06e-08 9.62e-08 7.2e-08 3e-08 4.27e-08 1.35e-07 4.04e-08 2.1e-08 8.03e-08 1.69e-08 1.24e-07 3.95e-09 4.79e-08
ENSG00000116729 \N 983007 2.66e-07 1.11e-07 3.56e-08 1.78e-07 9.02e-08 9.3e-08 1.38e-07 5.33e-08 1.4e-07 4.38e-08 1.6e-07 7.75e-08 1.33e-07 6.21e-08 5.55e-08 7.5e-08 4.48e-08 1.14e-07 5.19e-08 4.2e-08 1.04e-07 1.28e-07 1.26e-07 4.13e-08 1.33e-07 1.15e-07 1.12e-07 8.71e-08 1.03e-07 1.1e-07 9.73e-08 3.96e-08 3.09e-08 8.82e-08 8.93e-08 3.77e-08 4.84e-08 9.62e-08 7.2e-08 3e-08 4.27e-08 1.35e-07 4.04e-08 2.03e-08 8.03e-08 1.69e-08 1.24e-07 3.92e-09 4.79e-08