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Genes within 1Mb (chr1:68395574:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116717 GADD45A 710373 sc-eQTL 2.69e-01 -0.101 0.0912 0.91 B L1
ENSG00000142864 SERBP1 965159 sc-eQTL 2.05e-02 0.225 0.0965 0.91 B L1
ENSG00000116717 GADD45A 710373 sc-eQTL 1.84e-01 0.119 0.0895 0.91 CD4T L1
ENSG00000142864 SERBP1 965159 sc-eQTL 2.04e-01 -0.113 0.0884 0.91 CD4T L1
ENSG00000116717 GADD45A 710373 sc-eQTL 6.70e-01 -0.0344 0.0806 0.91 CD8T L1
ENSG00000142864 SERBP1 965159 sc-eQTL 8.10e-01 0.0203 0.0845 0.91 CD8T L1
ENSG00000116717 GADD45A 710373 sc-eQTL 8.20e-03 0.428 0.16 0.91 DC L1
ENSG00000116729 WLS 162454 sc-eQTL 7.56e-01 -0.0452 0.146 0.91 DC L1
ENSG00000142864 SERBP1 965159 sc-eQTL 7.07e-01 -0.0497 0.132 0.91 DC L1
ENSG00000116717 GADD45A 710373 sc-eQTL 4.69e-01 0.0728 0.1 0.91 Mono L1
ENSG00000116729 WLS 162454 sc-eQTL 9.10e-01 -0.0151 0.133 0.91 Mono L1
ENSG00000142864 SERBP1 965159 sc-eQTL 2.47e-01 0.124 0.107 0.91 Mono L1
ENSG00000116717 GADD45A 710373 sc-eQTL 5.77e-01 0.0684 0.122 0.912 NK L1
ENSG00000142864 SERBP1 965159 sc-eQTL 7.83e-01 0.0307 0.111 0.912 NK L1
ENSG00000024526 DEPDC1 -101647 sc-eQTL 4.67e-02 0.154 0.0768 0.91 Other_T L1
ENSG00000116717 GADD45A 710373 sc-eQTL 3.43e-01 0.0948 0.0997 0.91 Other_T L1
ENSG00000142864 SERBP1 965159 sc-eQTL 2.46e-01 -0.132 0.114 0.91 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116717 GADD45A 710373 sc-eQTL 1.65e-01 -0.221 0.159 0.903 B_Activated L2
ENSG00000142864 SERBP1 965159 sc-eQTL 1.02e-02 0.463 0.179 0.903 B_Activated L2
ENSG00000116717 GADD45A 710373 sc-eQTL 6.40e-01 -0.0656 0.14 0.91 B_Intermediate L2
ENSG00000142864 SERBP1 965159 sc-eQTL 2.77e-01 0.167 0.153 0.91 B_Intermediate L2
ENSG00000116717 GADD45A 710373 sc-eQTL 7.42e-01 -0.0509 0.154 0.909 B_Memory L2
ENSG00000142864 SERBP1 965159 sc-eQTL 8.56e-01 -0.0282 0.155 0.909 B_Memory L2
ENSG00000116717 GADD45A 710373 sc-eQTL 4.54e-01 -0.0801 0.107 0.91 B_Naive1 L2
ENSG00000142864 SERBP1 965159 sc-eQTL 9.79e-03 0.341 0.131 0.91 B_Naive1 L2
ENSG00000116717 GADD45A 710373 sc-eQTL 7.21e-01 -0.0563 0.157 0.91 B_Naive2 L2
ENSG00000142864 SERBP1 965159 sc-eQTL 8.51e-03 0.346 0.13 0.91 B_Naive2 L2
ENSG00000116717 GADD45A 710373 sc-eQTL 4.45e-01 0.11 0.144 0.907 CD4_CTL L2
ENSG00000142864 SERBP1 965159 sc-eQTL 1.49e-01 -0.24 0.166 0.907 CD4_CTL L2
ENSG00000116717 GADD45A 710373 sc-eQTL 1.62e-01 0.132 0.094 0.91 CD4_Naive L2
ENSG00000142864 SERBP1 965159 sc-eQTL 2.11e-01 -0.116 0.0923 0.91 CD4_Naive L2
ENSG00000116717 GADD45A 710373 sc-eQTL 5.96e-01 0.0482 0.0908 0.91 CD4_TCM L2
ENSG00000142864 SERBP1 965159 sc-eQTL 7.91e-01 -0.033 0.124 0.91 CD4_TCM L2
ENSG00000116717 GADD45A 710373 sc-eQTL 6.98e-01 -0.0384 0.0987 0.91 CD4_TEM L2
ENSG00000142864 SERBP1 965159 sc-eQTL 1.61e-01 -0.214 0.152 0.91 CD4_TEM L2
ENSG00000116717 GADD45A 710373 sc-eQTL 5.76e-01 0.0657 0.117 0.91 CD8_CTL L2
ENSG00000142864 SERBP1 965159 sc-eQTL 5.91e-01 0.0858 0.159 0.91 CD8_CTL L2
ENSG00000116717 GADD45A 710373 sc-eQTL 2.33e-01 -0.116 0.097 0.91 CD8_Naive L2
ENSG00000142864 SERBP1 965159 sc-eQTL 9.71e-02 -0.204 0.122 0.91 CD8_Naive L2
ENSG00000116717 GADD45A 710373 sc-eQTL 8.36e-01 0.0232 0.112 0.907 CD8_TCM L2
ENSG00000142864 SERBP1 965159 sc-eQTL 3.28e-01 -0.172 0.175 0.907 CD8_TCM L2
ENSG00000116717 GADD45A 710373 sc-eQTL 4.67e-01 -0.0965 0.133 0.909 CD8_TEM L2
ENSG00000142864 SERBP1 965159 sc-eQTL 9.50e-01 0.0105 0.168 0.909 CD8_TEM L2
ENSG00000024526 DEPDC1 -101647 sc-eQTL 8.18e-01 0.0137 0.0596 0.911 MAIT L2
ENSG00000116717 GADD45A 710373 sc-eQTL 3.04e-01 0.126 0.123 0.911 MAIT L2
ENSG00000142864 SERBP1 965159 sc-eQTL 5.61e-01 -0.0895 0.154 0.911 MAIT L2
ENSG00000116717 GADD45A 710373 sc-eQTL 7.44e-01 0.0491 0.15 0.911 NK_CD56bright L2
ENSG00000142864 SERBP1 965159 sc-eQTL 1.65e-01 -0.215 0.154 0.911 NK_CD56bright L2
ENSG00000116717 GADD45A 710373 sc-eQTL 5.12e-01 -0.0872 0.133 0.912 NK_CD56dim L2
ENSG00000142864 SERBP1 965159 sc-eQTL 8.51e-01 -0.0238 0.127 0.912 NK_CD56dim L2
ENSG00000116717 GADD45A 710373 sc-eQTL 2.11e-01 0.21 0.168 0.916 NK_HLA L2
ENSG00000142864 SERBP1 965159 sc-eQTL 8.69e-01 0.0253 0.154 0.916 NK_HLA L2
ENSG00000116717 GADD45A 710373 sc-eQTL 8.82e-01 -0.0209 0.141 0.912 NK_cytokine L2
ENSG00000142864 SERBP1 965159 sc-eQTL 3.61e-01 0.123 0.134 0.912 NK_cytokine L2
ENSG00000116717 GADD45A 710373 sc-eQTL 7.71e-01 0.0533 0.183 0.9 PB L2
ENSG00000142864 SERBP1 965159 sc-eQTL 7.12e-01 0.0498 0.134 0.9 PB L2
ENSG00000024526 DEPDC1 -101647 sc-eQTL 3.66e-01 0.0921 0.102 0.913 Pro_T L2
ENSG00000116717 GADD45A 710373 sc-eQTL 6.14e-01 0.0793 0.157 0.913 Pro_T L2
ENSG00000142864 SERBP1 965159 sc-eQTL 8.19e-01 -0.0253 0.111 0.913 Pro_T L2
ENSG00000116717 GADD45A 710373 sc-eQTL 7.58e-01 -0.0379 0.123 0.91 Treg L2
ENSG00000142864 SERBP1 965159 sc-eQTL 1.07e-01 -0.223 0.137 0.91 Treg L2
ENSG00000116717 GADD45A 710373 sc-eQTL 2.48e-01 0.207 0.179 0.91 cDC L2
ENSG00000116729 WLS 162454 sc-eQTL 5.23e-01 0.0989 0.154 0.91 cDC L2
ENSG00000142864 SERBP1 965159 sc-eQTL 2.65e-01 -0.16 0.143 0.91 cDC L2
ENSG00000116717 GADD45A 710373 sc-eQTL 7.70e-01 0.0314 0.107 0.91 cMono_IL1B L2
ENSG00000116729 WLS 162454 sc-eQTL 5.24e-01 -0.0888 0.139 0.91 cMono_IL1B L2
ENSG00000142864 SERBP1 965159 sc-eQTL 1.23e-01 0.188 0.122 0.91 cMono_IL1B L2
ENSG00000116717 GADD45A 710373 sc-eQTL 1.92e-01 0.181 0.139 0.91 cMono_S100A L2
ENSG00000116729 WLS 162454 sc-eQTL 4.33e-01 0.102 0.13 0.91 cMono_S100A L2
ENSG00000142864 SERBP1 965159 sc-eQTL 5.16e-01 -0.0913 0.14 0.91 cMono_S100A L2
ENSG00000116717 GADD45A 710373 sc-eQTL 4.38e-01 0.139 0.178 0.909 gdT L2
ENSG00000142864 SERBP1 965159 sc-eQTL 9.14e-01 0.0227 0.211 0.909 gdT L2
ENSG00000116717 GADD45A 710373 sc-eQTL 4.01e-01 0.125 0.148 0.913 intMono L2
ENSG00000116729 WLS 162454 sc-eQTL 4.37e-01 -0.123 0.158 0.913 intMono L2
ENSG00000142864 SERBP1 965159 sc-eQTL 2.58e-01 0.174 0.154 0.913 intMono L2
ENSG00000116717 GADD45A 710373 sc-eQTL 3.63e-01 0.147 0.161 0.914 ncMono L2
ENSG00000116729 WLS 162454 sc-eQTL 1.63e-01 0.206 0.147 0.914 ncMono L2
ENSG00000142864 SERBP1 965159 sc-eQTL 3.76e-01 0.128 0.144 0.914 ncMono L2
ENSG00000116717 GADD45A 710373 sc-eQTL 1.49e-01 0.243 0.168 0.912 pDC L2
ENSG00000116729 WLS 162454 sc-eQTL 2.60e-01 -0.159 0.141 0.912 pDC L2
ENSG00000142864 SERBP1 965159 sc-eQTL 5.05e-01 -0.108 0.161 0.912 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116717 GADD45A 710373 sc-eQTL 1.85e-01 -0.178 0.134 0.91 B_Memory LOneK1K
ENSG00000142864 SERBP1 965159 sc-eQTL 1.76e-01 0.192 0.142 0.91 B_Memory LOneK1K
ENSG00000116717 GADD45A 710373 sc-eQTL 3.94e-01 -0.0907 0.106 0.91 B_Naive LOneK1K
ENSG00000142864 SERBP1 965159 sc-eQTL 9.00e-03 0.3 0.114 0.91 B_Naive LOneK1K
ENSG00000116717 GADD45A 710373 sc-eQTL 3.53e-01 0.0993 0.107 0.91 CD14_Mono LOneK1K
ENSG00000116729 WLS 162454 sc-eQTL 7.35e-01 -0.0428 0.126 0.91 CD14_Mono LOneK1K
ENSG00000142864 SERBP1 965159 sc-eQTL 3.20e-01 0.111 0.112 0.91 CD14_Mono LOneK1K
ENSG00000116717 GADD45A 710373 sc-eQTL 3.76e-01 0.131 0.147 0.912 CD16_Mono LOneK1K
ENSG00000116729 WLS 162454 sc-eQTL 7.08e-01 -0.0579 0.154 0.912 CD16_Mono LOneK1K
ENSG00000142864 SERBP1 965159 sc-eQTL 4.06e-01 0.1 0.12 0.912 CD16_Mono LOneK1K
ENSG00000116717 GADD45A 710373 sc-eQTL 8.55e-01 0.0232 0.127 0.912 NK_CD56dim LOneK1K
ENSG00000142864 SERBP1 965159 sc-eQTL 4.95e-01 0.08 0.117 0.912 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116729 WLS 162454 eQTL 0.000927 0.132 0.0397 0.0 0.0 0.0937
ENSG00000234383 CTBP2P8 232484 eQTL 0.0367 0.0978 0.0467 0.0 0.0 0.0937

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116729 WLS 162454 4.54e-06 4.55e-06 8.35e-07 2.43e-06 1.62e-06 1.47e-06 4.13e-06 1.05e-06 4.94e-06 2.41e-06 4.46e-06 3.29e-06 7.58e-06 2.15e-06 1.45e-06 3.81e-06 2.02e-06 3.32e-06 1.54e-06 1.09e-06 3.06e-06 4.47e-06 3.78e-06 1.34e-06 5.39e-06 1.97e-06 2.53e-06 1.75e-06 4.24e-06 3.62e-06 2.19e-06 4.18e-07 5.47e-07 1.87e-06 2.04e-06 1.17e-06 1.07e-06 4.42e-07 8.38e-07 4.71e-07 7.14e-07 5.19e-06 4.01e-07 1.69e-07 6.09e-07 6.91e-07 1.05e-06 6.3e-07 4.39e-07