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Genes within 1Mb (chr1:68266612:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116717 GADD45A 581411 sc-eQTL 1.40e-01 -0.0725 0.049 0.626 B L1
ENSG00000142864 SERBP1 836197 sc-eQTL 7.11e-01 -0.0195 0.0526 0.626 B L1
ENSG00000116717 GADD45A 581411 sc-eQTL 4.07e-01 -0.0407 0.049 0.626 CD4T L1
ENSG00000142864 SERBP1 836197 sc-eQTL 7.21e-01 0.0174 0.0485 0.626 CD4T L1
ENSG00000116717 GADD45A 581411 sc-eQTL 2.17e-01 -0.0544 0.0439 0.626 CD8T L1
ENSG00000142864 SERBP1 836197 sc-eQTL 2.65e-01 0.0514 0.046 0.626 CD8T L1
ENSG00000116717 GADD45A 581411 sc-eQTL 2.17e-01 -0.109 0.0876 0.635 DC L1
ENSG00000116729 WLS 33492 sc-eQTL 3.34e-01 0.0758 0.0782 0.635 DC L1
ENSG00000142864 SERBP1 836197 sc-eQTL 9.53e-01 -0.00421 0.0713 0.635 DC L1
ENSG00000116717 GADD45A 581411 sc-eQTL 7.36e-01 -0.0181 0.0537 0.626 Mono L1
ENSG00000116729 WLS 33492 sc-eQTL 7.71e-01 -0.0207 0.0711 0.626 Mono L1
ENSG00000142864 SERBP1 836197 sc-eQTL 9.42e-01 -0.0042 0.0574 0.626 Mono L1
ENSG00000081985 IL12RB2 959248 sc-eQTL 6.89e-01 -0.0224 0.0561 0.624 NK L1
ENSG00000116717 GADD45A 581411 sc-eQTL 6.92e-01 -0.0261 0.0658 0.624 NK L1
ENSG00000142864 SERBP1 836197 sc-eQTL 8.54e-01 0.0111 0.0598 0.624 NK L1
ENSG00000024526 DEPDC1 -230609 sc-eQTL 5.23e-01 -0.0265 0.0414 0.626 Other_T L1
ENSG00000081985 IL12RB2 959248 sc-eQTL 4.22e-01 0.0635 0.0788 0.626 Other_T L1
ENSG00000116717 GADD45A 581411 sc-eQTL 4.14e-02 -0.109 0.0529 0.626 Other_T L1
ENSG00000142864 SERBP1 836197 sc-eQTL 6.12e-01 -0.031 0.0609 0.626 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116717 GADD45A 581411 sc-eQTL 9.35e-01 0.00717 0.0873 0.622 B_Activated L2
ENSG00000142864 SERBP1 836197 sc-eQTL 7.93e-01 -0.0262 0.0997 0.622 B_Activated L2
ENSG00000116717 GADD45A 581411 sc-eQTL 3.48e-01 -0.0718 0.0763 0.627 B_Intermediate L2
ENSG00000142864 SERBP1 836197 sc-eQTL 6.94e-01 -0.033 0.0838 0.627 B_Intermediate L2
ENSG00000116717 GADD45A 581411 sc-eQTL 9.26e-01 0.00769 0.0826 0.625 B_Memory L2
ENSG00000142864 SERBP1 836197 sc-eQTL 9.87e-01 -0.00138 0.083 0.625 B_Memory L2
ENSG00000116717 GADD45A 581411 sc-eQTL 1.49e-01 -0.085 0.0588 0.626 B_Naive1 L2
ENSG00000142864 SERBP1 836197 sc-eQTL 3.88e-01 -0.0634 0.0734 0.626 B_Naive1 L2
ENSG00000116717 GADD45A 581411 sc-eQTL 8.82e-01 0.0127 0.0857 0.624 B_Naive2 L2
ENSG00000142864 SERBP1 836197 sc-eQTL 2.35e-01 -0.0855 0.0718 0.624 B_Naive2 L2
ENSG00000116717 GADD45A 581411 sc-eQTL 4.23e-01 0.0628 0.0781 0.625 CD4_CTL L2
ENSG00000142864 SERBP1 836197 sc-eQTL 5.30e-01 -0.0567 0.0902 0.625 CD4_CTL L2
ENSG00000116717 GADD45A 581411 sc-eQTL 4.68e-01 -0.0373 0.0514 0.626 CD4_Naive L2
ENSG00000142864 SERBP1 836197 sc-eQTL 7.03e-01 0.0193 0.0505 0.626 CD4_Naive L2
ENSG00000116717 GADD45A 581411 sc-eQTL 1.50e-01 -0.0709 0.0491 0.626 CD4_TCM L2
ENSG00000142864 SERBP1 836197 sc-eQTL 2.88e-01 0.0717 0.0673 0.626 CD4_TCM L2
ENSG00000116717 GADD45A 581411 sc-eQTL 6.00e-01 -0.0284 0.0542 0.626 CD4_TEM L2
ENSG00000142864 SERBP1 836197 sc-eQTL 1.01e-01 0.137 0.0833 0.626 CD4_TEM L2
ENSG00000116717 GADD45A 581411 sc-eQTL 7.40e-01 -0.0208 0.0624 0.626 CD8_CTL L2
ENSG00000142864 SERBP1 836197 sc-eQTL 1.09e-01 0.136 0.0844 0.626 CD8_CTL L2
ENSG00000116717 GADD45A 581411 sc-eQTL 8.43e-02 -0.0898 0.0518 0.626 CD8_Naive L2
ENSG00000142864 SERBP1 836197 sc-eQTL 5.37e-01 -0.0408 0.066 0.626 CD8_Naive L2
ENSG00000116717 GADD45A 581411 sc-eQTL 1.43e-01 -0.0906 0.0616 0.641 CD8_TCM L2
ENSG00000142864 SERBP1 836197 sc-eQTL 9.55e-01 -0.00554 0.0972 0.641 CD8_TCM L2
ENSG00000116717 GADD45A 581411 sc-eQTL 1.36e-03 -0.236 0.0725 0.614 CD8_TEM L2
ENSG00000142864 SERBP1 836197 sc-eQTL 5.33e-01 0.0588 0.0941 0.614 CD8_TEM L2
ENSG00000024526 DEPDC1 -230609 sc-eQTL 5.84e-01 0.0181 0.0329 0.626 MAIT L2
ENSG00000081985 IL12RB2 959248 sc-eQTL 9.62e-01 0.00433 0.0907 0.626 MAIT L2
ENSG00000116717 GADD45A 581411 sc-eQTL 1.73e-01 -0.0925 0.0677 0.626 MAIT L2
ENSG00000142864 SERBP1 836197 sc-eQTL 7.44e-01 -0.0279 0.0851 0.626 MAIT L2
ENSG00000081985 IL12RB2 959248 sc-eQTL 9.71e-01 -0.0026 0.0711 0.622 NK_CD56bright L2
ENSG00000116717 GADD45A 581411 sc-eQTL 6.63e-01 -0.0358 0.0823 0.622 NK_CD56bright L2
ENSG00000142864 SERBP1 836197 sc-eQTL 8.10e-02 -0.148 0.0841 0.622 NK_CD56bright L2
ENSG00000081985 IL12RB2 959248 sc-eQTL 3.00e-01 -0.0654 0.0629 0.623 NK_CD56dim L2
ENSG00000116717 GADD45A 581411 sc-eQTL 3.98e-01 0.0607 0.0717 0.623 NK_CD56dim L2
ENSG00000142864 SERBP1 836197 sc-eQTL 9.69e-01 -0.00268 0.0685 0.623 NK_CD56dim L2
ENSG00000081985 IL12RB2 959248 sc-eQTL 6.91e-01 -0.0244 0.0614 0.63 NK_HLA L2
ENSG00000116717 GADD45A 581411 sc-eQTL 2.39e-02 -0.203 0.0891 0.63 NK_HLA L2
ENSG00000142864 SERBP1 836197 sc-eQTL 4.31e-01 -0.065 0.0823 0.63 NK_HLA L2
ENSG00000081985 IL12RB2 959248 sc-eQTL 5.55e-01 -0.042 0.0709 0.623 NK_cytokine L2
ENSG00000116717 GADD45A 581411 sc-eQTL 4.64e-01 -0.0559 0.0763 0.623 NK_cytokine L2
ENSG00000142864 SERBP1 836197 sc-eQTL 7.99e-02 0.128 0.0725 0.623 NK_cytokine L2
ENSG00000116717 GADD45A 581411 sc-eQTL 4.70e-01 -0.0736 0.101 0.611 PB L2
ENSG00000142864 SERBP1 836197 sc-eQTL 2.61e-01 0.0839 0.0742 0.611 PB L2
ENSG00000024526 DEPDC1 -230609 sc-eQTL 5.83e-01 -0.0298 0.0542 0.624 Pro_T L2
ENSG00000081985 IL12RB2 959248 sc-eQTL 8.63e-01 -0.014 0.0813 0.624 Pro_T L2
ENSG00000116717 GADD45A 581411 sc-eQTL 8.07e-01 -0.0205 0.0837 0.624 Pro_T L2
ENSG00000142864 SERBP1 836197 sc-eQTL 9.39e-01 0.00454 0.0589 0.624 Pro_T L2
ENSG00000116717 GADD45A 581411 sc-eQTL 9.78e-01 0.00188 0.0669 0.626 Treg L2
ENSG00000142864 SERBP1 836197 sc-eQTL 5.44e-01 0.0457 0.0752 0.626 Treg L2
ENSG00000116717 GADD45A 581411 sc-eQTL 7.42e-01 -0.0316 0.0961 0.632 cDC L2
ENSG00000116729 WLS 33492 sc-eQTL 3.35e-01 0.0797 0.0824 0.632 cDC L2
ENSG00000142864 SERBP1 836197 sc-eQTL 8.72e-01 -0.0124 0.0769 0.632 cDC L2
ENSG00000116717 GADD45A 581411 sc-eQTL 9.20e-01 0.00574 0.0572 0.626 cMono_IL1B L2
ENSG00000116729 WLS 33492 sc-eQTL 8.15e-01 0.0174 0.0743 0.626 cMono_IL1B L2
ENSG00000142864 SERBP1 836197 sc-eQTL 3.99e-01 -0.0551 0.0652 0.626 cMono_IL1B L2
ENSG00000116717 GADD45A 581411 sc-eQTL 6.99e-01 -0.0287 0.0741 0.626 cMono_S100A L2
ENSG00000116729 WLS 33492 sc-eQTL 1.62e-01 -0.0971 0.0692 0.626 cMono_S100A L2
ENSG00000142864 SERBP1 836197 sc-eQTL 4.98e-01 0.0507 0.0746 0.626 cMono_S100A L2
ENSG00000081985 IL12RB2 959248 sc-eQTL 3.45e-01 0.0736 0.0776 0.642 gdT L2
ENSG00000116717 GADD45A 581411 sc-eQTL 1.68e-01 -0.133 0.0958 0.642 gdT L2
ENSG00000142864 SERBP1 836197 sc-eQTL 7.99e-01 -0.029 0.114 0.642 gdT L2
ENSG00000116717 GADD45A 581411 sc-eQTL 6.81e-01 0.0325 0.079 0.627 intMono L2
ENSG00000116729 WLS 33492 sc-eQTL 7.59e-01 -0.0259 0.0843 0.627 intMono L2
ENSG00000142864 SERBP1 836197 sc-eQTL 9.16e-01 0.00865 0.082 0.627 intMono L2
ENSG00000116717 GADD45A 581411 sc-eQTL 1.10e-01 -0.141 0.0877 0.622 ncMono L2
ENSG00000116729 WLS 33492 sc-eQTL 6.73e-01 -0.0342 0.081 0.622 ncMono L2
ENSG00000142864 SERBP1 836197 sc-eQTL 1.57e-01 0.112 0.0787 0.622 ncMono L2
ENSG00000116717 GADD45A 581411 sc-eQTL 9.15e-01 0.00939 0.088 0.624 pDC L2
ENSG00000116729 WLS 33492 sc-eQTL 7.23e-01 0.0261 0.0736 0.624 pDC L2
ENSG00000142864 SERBP1 836197 sc-eQTL 5.15e-01 -0.0548 0.084 0.624 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116717 GADD45A 581411 sc-eQTL 5.88e-01 -0.0389 0.0716 0.626 B_Memory LOneK1K
ENSG00000142864 SERBP1 836197 sc-eQTL 9.19e-01 -0.00772 0.0759 0.626 B_Memory LOneK1K
ENSG00000116717 GADD45A 581411 sc-eQTL 3.78e-01 -0.0512 0.0579 0.626 B_Naive LOneK1K
ENSG00000142864 SERBP1 836197 sc-eQTL 3.71e-01 -0.0564 0.0628 0.626 B_Naive LOneK1K
ENSG00000116717 GADD45A 581411 sc-eQTL 8.03e-01 -0.0142 0.057 0.626 CD14_Mono LOneK1K
ENSG00000116729 WLS 33492 sc-eQTL 5.85e-01 -0.0368 0.0674 0.626 CD14_Mono LOneK1K
ENSG00000142864 SERBP1 836197 sc-eQTL 5.99e-01 -0.0314 0.0597 0.626 CD14_Mono LOneK1K
ENSG00000116717 GADD45A 581411 sc-eQTL 4.65e-01 -0.0578 0.079 0.625 CD16_Mono LOneK1K
ENSG00000116729 WLS 33492 sc-eQTL 3.94e-01 -0.0707 0.0827 0.625 CD16_Mono LOneK1K
ENSG00000142864 SERBP1 836197 sc-eQTL 1.98e-01 0.0833 0.0645 0.625 CD16_Mono LOneK1K
ENSG00000081985 IL12RB2 959248 sc-eQTL 4.63e-01 -0.0441 0.06 0.623 NK_CD56dim LOneK1K
ENSG00000116717 GADD45A 581411 sc-eQTL 5.77e-01 -0.0382 0.0683 0.623 NK_CD56dim LOneK1K
ENSG00000142864 SERBP1 836197 sc-eQTL 6.31e-01 0.0302 0.0628 0.623 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000081985 IL12RB2 959248 eQTL 0.0354 0.0523 0.0248 0.0 0.0 0.412
ENSG00000116729 WLS 33492 eQTL 1.04e-50 0.337 0.0212 0.00104 0.0 0.412
ENSG00000232284 GNG12-AS1 434309 eQTL 1.65e-10 0.201 0.0312 0.0 0.0 0.412
ENSG00000234383 CTBP2P8 103522 eQTL 3.24e-24 0.276 0.0264 0.0 0.0 0.412

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116729 WLS 33492 1.48e-05 2.04e-05 3.01e-06 1.14e-05 2.44e-06 6.64e-06 2.14e-05 3.01e-06 1.63e-05 7.59e-06 1.97e-05 7.82e-06 2.95e-05 7.35e-06 5.07e-06 1.01e-05 8.54e-06 1.35e-05 4.21e-06 4.15e-06 7.66e-06 1.66e-05 1.58e-05 4.81e-06 2.74e-05 5.05e-06 7.74e-06 7.57e-06 1.67e-05 1.48e-05 1.07e-05 1.16e-06 1.38e-06 4.04e-06 7.21e-06 3.74e-06 1.77e-06 2.4e-06 3.01e-06 2.1e-06 9.63e-07 2.39e-05 2.48e-06 1.58e-07 9.15e-07 2.45e-06 2.46e-06 8.32e-07 7.82e-07
ENSG00000232284 GNG12-AS1 434309 9.83e-07 6.04e-07 1.2e-07 4.01e-07 1.07e-07 2.67e-07 5.49e-07 9.07e-08 3.66e-07 2.82e-07 6.28e-07 3.5e-07 9.79e-07 1.72e-07 2.86e-07 2.45e-07 3.52e-07 3.74e-07 2.79e-07 1.69e-07 2.05e-07 3.95e-07 3.7e-07 1.32e-07 9.15e-07 2.2e-07 2.58e-07 2.54e-07 3.56e-07 5.56e-07 2.93e-07 6.56e-08 5.68e-08 1.71e-07 3.48e-07 7.86e-08 1.31e-07 7.51e-08 7.72e-08 1.56e-08 8.75e-08 7.2e-07 6.37e-08 1.78e-08 8.45e-08 1.37e-08 9.34e-08 3.14e-09 6.06e-08
ENSG00000234383 CTBP2P8 103522 6.57e-06 9.31e-06 9.7e-07 4.56e-06 1.67e-06 2.2e-06 8.7e-06 1.26e-06 4.96e-06 3.42e-06 8.09e-06 2.94e-06 1.13e-05 3.66e-06 1.17e-06 4.87e-06 3.63e-06 3.75e-06 1.65e-06 1.6e-06 2.61e-06 7.5e-06 4.97e-06 1.93e-06 1.07e-05 2.07e-06 3.22e-06 2.09e-06 6.27e-06 6.66e-06 3.37e-06 4.97e-07 7.34e-07 2.3e-06 2.88e-06 1.3e-06 1.03e-06 4.36e-07 1.29e-06 8.18e-07 4.32e-07 9.56e-06 8.75e-07 1.8e-07 6.11e-07 8.98e-07 1.16e-06 7.35e-07 5.12e-07