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Genes within 1Mb (chr1:68250738:G:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116717 GADD45A 565537 sc-eQTL 1.56e-01 -0.07 0.0492 0.419 B L1
ENSG00000142864 SERBP1 820323 sc-eQTL 2.28e-01 -0.0637 0.0526 0.419 B L1
ENSG00000116717 GADD45A 565537 sc-eQTL 6.15e-01 -0.0248 0.0492 0.419 CD4T L1
ENSG00000142864 SERBP1 820323 sc-eQTL 4.09e-01 -0.0402 0.0486 0.419 CD4T L1
ENSG00000116717 GADD45A 565537 sc-eQTL 1.32e-01 -0.0661 0.0437 0.419 CD8T L1
ENSG00000142864 SERBP1 820323 sc-eQTL 8.60e-01 -0.00815 0.0461 0.419 CD8T L1
ENSG00000116717 GADD45A 565537 sc-eQTL 8.31e-01 0.0187 0.0875 0.428 DC L1
ENSG00000116729 WLS 17618 sc-eQTL 8.86e-01 -0.0112 0.078 0.428 DC L1
ENSG00000142864 SERBP1 820323 sc-eQTL 5.88e-01 0.0384 0.0709 0.428 DC L1
ENSG00000116717 GADD45A 565537 sc-eQTL 2.79e-01 -0.0585 0.054 0.419 Mono L1
ENSG00000116729 WLS 17618 sc-eQTL 6.46e-01 -0.0329 0.0716 0.419 Mono L1
ENSG00000142864 SERBP1 820323 sc-eQTL 8.43e-01 -0.0115 0.0578 0.419 Mono L1
ENSG00000081985 IL12RB2 943374 sc-eQTL 6.83e-01 0.0231 0.0565 0.418 NK L1
ENSG00000116717 GADD45A 565537 sc-eQTL 3.89e-01 -0.0571 0.0662 0.418 NK L1
ENSG00000142864 SERBP1 820323 sc-eQTL 8.38e-01 -0.0124 0.0602 0.418 NK L1
ENSG00000024526 DEPDC1 -246483 sc-eQTL 9.68e-01 0.00167 0.0415 0.419 Other_T L1
ENSG00000081985 IL12RB2 943374 sc-eQTL 2.50e-01 0.0909 0.0787 0.419 Other_T L1
ENSG00000116717 GADD45A 565537 sc-eQTL 1.08e-02 -0.135 0.0527 0.419 Other_T L1
ENSG00000142864 SERBP1 820323 sc-eQTL 8.90e-01 0.00843 0.061 0.419 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116717 GADD45A 565537 sc-eQTL 7.18e-01 -0.0322 0.0888 0.423 B_Activated L2
ENSG00000142864 SERBP1 820323 sc-eQTL 7.24e-01 -0.0358 0.101 0.423 B_Activated L2
ENSG00000116717 GADD45A 565537 sc-eQTL 5.47e-01 -0.0468 0.0776 0.418 B_Intermediate L2
ENSG00000142864 SERBP1 820323 sc-eQTL 9.22e-01 0.00833 0.0851 0.418 B_Intermediate L2
ENSG00000116717 GADD45A 565537 sc-eQTL 2.15e-01 -0.105 0.0841 0.42 B_Memory L2
ENSG00000142864 SERBP1 820323 sc-eQTL 9.25e-01 -0.00804 0.0848 0.42 B_Memory L2
ENSG00000116717 GADD45A 565537 sc-eQTL 3.01e-01 -0.0604 0.0583 0.419 B_Naive1 L2
ENSG00000142864 SERBP1 820323 sc-eQTL 3.19e-01 -0.0724 0.0725 0.419 B_Naive1 L2
ENSG00000116717 GADD45A 565537 sc-eQTL 9.55e-01 -0.00489 0.0863 0.418 B_Naive2 L2
ENSG00000142864 SERBP1 820323 sc-eQTL 9.37e-01 0.00569 0.0725 0.418 B_Naive2 L2
ENSG00000116717 GADD45A 565537 sc-eQTL 5.00e-01 0.0533 0.0789 0.423 CD4_CTL L2
ENSG00000142864 SERBP1 820323 sc-eQTL 1.61e-01 -0.128 0.0907 0.423 CD4_CTL L2
ENSG00000116717 GADD45A 565537 sc-eQTL 2.92e-01 -0.0547 0.0518 0.419 CD4_Naive L2
ENSG00000142864 SERBP1 820323 sc-eQTL 3.93e-01 -0.0436 0.0509 0.419 CD4_Naive L2
ENSG00000116717 GADD45A 565537 sc-eQTL 4.86e-01 -0.0344 0.0493 0.419 CD4_TCM L2
ENSG00000142864 SERBP1 820323 sc-eQTL 1.75e-01 -0.0913 0.0672 0.419 CD4_TCM L2
ENSG00000116717 GADD45A 565537 sc-eQTL 6.72e-01 0.0232 0.0547 0.419 CD4_TEM L2
ENSG00000142864 SERBP1 820323 sc-eQTL 9.88e-01 -0.0013 0.0846 0.419 CD4_TEM L2
ENSG00000116717 GADD45A 565537 sc-eQTL 8.02e-02 -0.109 0.0618 0.419 CD8_CTL L2
ENSG00000142864 SERBP1 820323 sc-eQTL 7.70e-01 0.0248 0.0847 0.419 CD8_CTL L2
ENSG00000116717 GADD45A 565537 sc-eQTL 5.92e-02 -0.0992 0.0523 0.419 CD8_Naive L2
ENSG00000142864 SERBP1 820323 sc-eQTL 6.90e-01 -0.0267 0.0668 0.419 CD8_Naive L2
ENSG00000116717 GADD45A 565537 sc-eQTL 6.48e-01 -0.0287 0.0627 0.428 CD8_TCM L2
ENSG00000142864 SERBP1 820323 sc-eQTL 4.04e-01 -0.0823 0.0983 0.428 CD8_TCM L2
ENSG00000116717 GADD45A 565537 sc-eQTL 2.13e-01 -0.0896 0.0717 0.406 CD8_TEM L2
ENSG00000142864 SERBP1 820323 sc-eQTL 5.98e-01 0.048 0.0909 0.406 CD8_TEM L2
ENSG00000024526 DEPDC1 -246483 sc-eQTL 2.33e-01 0.0388 0.0324 0.416 MAIT L2
ENSG00000081985 IL12RB2 943374 sc-eQTL 2.40e-01 0.105 0.0892 0.416 MAIT L2
ENSG00000116717 GADD45A 565537 sc-eQTL 1.04e-01 -0.109 0.0667 0.416 MAIT L2
ENSG00000142864 SERBP1 820323 sc-eQTL 5.56e-01 -0.0495 0.0839 0.416 MAIT L2
ENSG00000081985 IL12RB2 943374 sc-eQTL 2.50e-01 0.0826 0.0716 0.413 NK_CD56bright L2
ENSG00000116717 GADD45A 565537 sc-eQTL 9.00e-02 -0.141 0.0825 0.413 NK_CD56bright L2
ENSG00000142864 SERBP1 820323 sc-eQTL 3.66e-01 -0.0773 0.0854 0.413 NK_CD56bright L2
ENSG00000081985 IL12RB2 943374 sc-eQTL 7.10e-01 -0.0237 0.0637 0.418 NK_CD56dim L2
ENSG00000116717 GADD45A 565537 sc-eQTL 6.56e-01 -0.0324 0.0725 0.418 NK_CD56dim L2
ENSG00000142864 SERBP1 820323 sc-eQTL 8.62e-01 0.012 0.0692 0.418 NK_CD56dim L2
ENSG00000081985 IL12RB2 943374 sc-eQTL 9.59e-01 0.00314 0.0613 0.418 NK_HLA L2
ENSG00000116717 GADD45A 565537 sc-eQTL 1.82e-01 -0.12 0.0897 0.418 NK_HLA L2
ENSG00000142864 SERBP1 820323 sc-eQTL 5.94e-01 -0.0439 0.0822 0.418 NK_HLA L2
ENSG00000081985 IL12RB2 943374 sc-eQTL 9.35e-01 -0.00584 0.0715 0.418 NK_cytokine L2
ENSG00000116717 GADD45A 565537 sc-eQTL 7.87e-01 -0.0208 0.0769 0.418 NK_cytokine L2
ENSG00000142864 SERBP1 820323 sc-eQTL 8.11e-01 0.0176 0.0736 0.418 NK_cytokine L2
ENSG00000116717 GADD45A 565537 sc-eQTL 1.01e-01 -0.161 0.0973 0.404 PB L2
ENSG00000142864 SERBP1 820323 sc-eQTL 6.40e-01 -0.0339 0.0723 0.404 PB L2
ENSG00000024526 DEPDC1 -246483 sc-eQTL 2.45e-01 -0.0634 0.0544 0.422 Pro_T L2
ENSG00000081985 IL12RB2 943374 sc-eQTL 9.88e-01 -0.00128 0.0817 0.422 Pro_T L2
ENSG00000116717 GADD45A 565537 sc-eQTL 8.40e-01 -0.017 0.0841 0.422 Pro_T L2
ENSG00000142864 SERBP1 820323 sc-eQTL 4.28e-01 -0.047 0.0592 0.422 Pro_T L2
ENSG00000116717 GADD45A 565537 sc-eQTL 5.70e-01 -0.038 0.0667 0.419 Treg L2
ENSG00000142864 SERBP1 820323 sc-eQTL 3.13e-01 0.0758 0.0749 0.419 Treg L2
ENSG00000116717 GADD45A 565537 sc-eQTL 8.14e-01 0.0229 0.0975 0.422 cDC L2
ENSG00000116729 WLS 17618 sc-eQTL 6.22e-01 0.0414 0.0838 0.422 cDC L2
ENSG00000142864 SERBP1 820323 sc-eQTL 8.79e-01 0.0119 0.0781 0.422 cDC L2
ENSG00000116717 GADD45A 565537 sc-eQTL 5.29e-01 -0.0363 0.0575 0.419 cMono_IL1B L2
ENSG00000116729 WLS 17618 sc-eQTL 5.07e-01 -0.0497 0.0748 0.419 cMono_IL1B L2
ENSG00000142864 SERBP1 820323 sc-eQTL 8.12e-01 0.0156 0.0658 0.419 cMono_IL1B L2
ENSG00000116717 GADD45A 565537 sc-eQTL 4.70e-01 -0.0537 0.0743 0.419 cMono_S100A L2
ENSG00000116729 WLS 17618 sc-eQTL 3.23e-01 -0.0689 0.0696 0.419 cMono_S100A L2
ENSG00000142864 SERBP1 820323 sc-eQTL 8.64e-01 -0.0128 0.075 0.419 cMono_S100A L2
ENSG00000081985 IL12RB2 943374 sc-eQTL 9.77e-01 -0.00224 0.0791 0.43 gdT L2
ENSG00000116717 GADD45A 565537 sc-eQTL 1.37e-02 -0.239 0.0959 0.43 gdT L2
ENSG00000142864 SERBP1 820323 sc-eQTL 9.58e-01 -0.00609 0.116 0.43 gdT L2
ENSG00000116717 GADD45A 565537 sc-eQTL 3.13e-01 -0.0807 0.0798 0.422 intMono L2
ENSG00000116729 WLS 17618 sc-eQTL 9.84e-01 -0.00167 0.0853 0.422 intMono L2
ENSG00000142864 SERBP1 820323 sc-eQTL 7.28e-01 -0.0288 0.083 0.422 intMono L2
ENSG00000116717 GADD45A 565537 sc-eQTL 5.24e-02 -0.169 0.0868 0.421 ncMono L2
ENSG00000116729 WLS 17618 sc-eQTL 7.57e-01 0.0249 0.0804 0.421 ncMono L2
ENSG00000142864 SERBP1 820323 sc-eQTL 3.47e-01 0.0739 0.0783 0.421 ncMono L2
ENSG00000116717 GADD45A 565537 sc-eQTL 3.53e-01 0.0813 0.0872 0.421 pDC L2
ENSG00000116729 WLS 17618 sc-eQTL 4.06e-01 -0.0608 0.073 0.421 pDC L2
ENSG00000142864 SERBP1 820323 sc-eQTL 7.77e-01 0.0237 0.0836 0.421 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116717 GADD45A 565537 sc-eQTL 5.75e-01 -0.0407 0.0725 0.419 B_Memory LOneK1K
ENSG00000142864 SERBP1 820323 sc-eQTL 3.73e-01 -0.0684 0.0766 0.419 B_Memory LOneK1K
ENSG00000116717 GADD45A 565537 sc-eQTL 4.73e-01 -0.0412 0.0574 0.419 B_Naive LOneK1K
ENSG00000142864 SERBP1 820323 sc-eQTL 6.70e-01 -0.0266 0.0623 0.419 B_Naive LOneK1K
ENSG00000116717 GADD45A 565537 sc-eQTL 4.12e-01 -0.0471 0.0573 0.419 CD14_Mono LOneK1K
ENSG00000116729 WLS 17618 sc-eQTL 4.39e-01 -0.0525 0.0678 0.419 CD14_Mono LOneK1K
ENSG00000142864 SERBP1 820323 sc-eQTL 9.79e-01 -0.00161 0.0601 0.419 CD14_Mono LOneK1K
ENSG00000116717 GADD45A 565537 sc-eQTL 4.66e-02 -0.157 0.0786 0.42 CD16_Mono LOneK1K
ENSG00000116729 WLS 17618 sc-eQTL 3.61e-01 0.0758 0.0829 0.42 CD16_Mono LOneK1K
ENSG00000142864 SERBP1 820323 sc-eQTL 7.00e-01 0.025 0.0649 0.42 CD16_Mono LOneK1K
ENSG00000081985 IL12RB2 943374 sc-eQTL 8.52e-01 -0.0113 0.0605 0.418 NK_CD56dim LOneK1K
ENSG00000116717 GADD45A 565537 sc-eQTL 5.14e-01 -0.045 0.0688 0.418 NK_CD56dim LOneK1K
ENSG00000142864 SERBP1 820323 sc-eQTL 9.83e-01 0.00133 0.0634 0.418 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116729 WLS 17618 eQTL 0.00125 0.0784 0.0242 0.0203 0.0177 0.384
ENSG00000232284 GNG12-AS1 418435 eQTL 0.0254 0.0726 0.0324 0.0 0.0 0.384
ENSG00000234383 CTBP2P8 87648 eQTL 0.000851 0.0949 0.0284 0.0 0.0 0.384

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116729 WLS 17618 2.51e-05 2.91e-05 5.07e-06 1.42e-05 4.49e-06 1.15e-05 3.55e-05 3.95e-06 2.44e-05 1.23e-05 3.22e-05 1.42e-05 4.23e-05 1.16e-05 6.21e-06 1.48e-05 1.42e-05 2.05e-05 6.91e-06 5.93e-06 1.18e-05 2.64e-05 2.61e-05 7.73e-06 3.73e-05 6.43e-06 1.12e-05 1.05e-05 2.65e-05 2.21e-05 1.65e-05 1.62e-06 2.31e-06 6.44e-06 1.04e-05 4.91e-06 2.73e-06 2.99e-06 4.29e-06 2.93e-06 1.67e-06 3.42e-05 2.83e-06 3.6e-07 2.06e-06 3.36e-06 3.77e-06 1.41e-06 1.41e-06
ENSG00000234383 CTBP2P8 87648 6.97e-06 9.55e-06 1.24e-06 4.75e-06 1.94e-06 3.19e-06 9.57e-06 1.76e-06 7.74e-06 4.38e-06 1.08e-05 5.03e-06 1.31e-05 4e-06 2.21e-06 6.09e-06 3.77e-06 4.46e-06 2.56e-06 2.62e-06 4.51e-06 8.17e-06 6.93e-06 2.68e-06 1.24e-05 2.79e-06 4.47e-06 3.37e-06 7.52e-06 7.75e-06 4.77e-06 7.91e-07 9.66e-07 2.78e-06 3.64e-06 2.1e-06 1.63e-06 1.45e-06 1.62e-06 8.74e-07 8.13e-07 1.19e-05 1.28e-06 1.7e-07 7.55e-07 1.36e-06 9.95e-07 6.45e-07 5.98e-07