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Genes within 1Mb (chr1:68236558:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116717 GADD45A 551357 sc-eQTL 6.23e-01 0.0259 0.0526 0.374 B L1
ENSG00000142864 SERBP1 806143 sc-eQTL 4.26e-01 0.0448 0.0562 0.374 B L1
ENSG00000116717 GADD45A 551357 sc-eQTL 4.28e-01 0.0415 0.0523 0.374 CD4T L1
ENSG00000142864 SERBP1 806143 sc-eQTL 9.38e-01 -0.00403 0.0517 0.374 CD4T L1
ENSG00000116717 GADD45A 551357 sc-eQTL 1.54e-01 0.0672 0.0469 0.374 CD8T L1
ENSG00000142864 SERBP1 806143 sc-eQTL 9.22e-01 0.00485 0.0494 0.374 CD8T L1
ENSG00000116717 GADD45A 551357 sc-eQTL 4.87e-01 -0.0648 0.0931 0.372 DC L1
ENSG00000116729 WLS 3438 sc-eQTL 4.02e-01 0.0697 0.0829 0.372 DC L1
ENSG00000142864 SERBP1 806143 sc-eQTL 1.77e-01 -0.102 0.0752 0.372 DC L1
ENSG00000116717 GADD45A 551357 sc-eQTL 2.02e-01 0.0741 0.058 0.374 Mono L1
ENSG00000116729 WLS 3438 sc-eQTL 7.76e-01 -0.0219 0.077 0.374 Mono L1
ENSG00000142864 SERBP1 806143 sc-eQTL 7.10e-01 -0.0232 0.0621 0.374 Mono L1
ENSG00000081985 IL12RB2 929194 sc-eQTL 9.29e-01 0.0054 0.0605 0.376 NK L1
ENSG00000116717 GADD45A 551357 sc-eQTL 3.35e-01 0.0685 0.0708 0.376 NK L1
ENSG00000142864 SERBP1 806143 sc-eQTL 6.58e-01 -0.0286 0.0645 0.376 NK L1
ENSG00000024526 DEPDC1 -260663 sc-eQTL 8.34e-01 0.00926 0.0443 0.374 Other_T L1
ENSG00000081985 IL12RB2 929194 sc-eQTL 5.95e-01 0.0448 0.0842 0.374 Other_T L1
ENSG00000116717 GADD45A 551357 sc-eQTL 2.03e-01 0.0727 0.0569 0.374 Other_T L1
ENSG00000142864 SERBP1 806143 sc-eQTL 3.71e-01 -0.0582 0.0649 0.374 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116717 GADD45A 551357 sc-eQTL 9.34e-01 -0.00798 0.0958 0.365 B_Activated L2
ENSG00000142864 SERBP1 806143 sc-eQTL 1.56e-01 0.155 0.109 0.365 B_Activated L2
ENSG00000116717 GADD45A 551357 sc-eQTL 7.75e-01 0.0235 0.0818 0.373 B_Intermediate L2
ENSG00000142864 SERBP1 806143 sc-eQTL 1.02e-01 -0.146 0.0891 0.373 B_Intermediate L2
ENSG00000116717 GADD45A 551357 sc-eQTL 8.52e-01 -0.0164 0.0882 0.373 B_Memory L2
ENSG00000142864 SERBP1 806143 sc-eQTL 8.52e-01 0.0166 0.0886 0.373 B_Memory L2
ENSG00000116717 GADD45A 551357 sc-eQTL 1.27e-01 0.0957 0.0624 0.374 B_Naive1 L2
ENSG00000142864 SERBP1 806143 sc-eQTL 3.07e-01 0.0798 0.0779 0.374 B_Naive1 L2
ENSG00000116717 GADD45A 551357 sc-eQTL 7.28e-01 -0.0325 0.0931 0.373 B_Naive2 L2
ENSG00000142864 SERBP1 806143 sc-eQTL 7.23e-01 -0.0278 0.0782 0.373 B_Naive2 L2
ENSG00000116717 GADD45A 551357 sc-eQTL 8.94e-01 0.011 0.0826 0.37 CD4_CTL L2
ENSG00000142864 SERBP1 806143 sc-eQTL 3.76e-01 0.0845 0.0952 0.37 CD4_CTL L2
ENSG00000116717 GADD45A 551357 sc-eQTL 2.72e-01 0.0608 0.0551 0.374 CD4_Naive L2
ENSG00000142864 SERBP1 806143 sc-eQTL 8.78e-01 0.00835 0.0543 0.374 CD4_Naive L2
ENSG00000116717 GADD45A 551357 sc-eQTL 2.00e-01 0.067 0.0522 0.374 CD4_TCM L2
ENSG00000142864 SERBP1 806143 sc-eQTL 3.78e-01 0.0632 0.0715 0.374 CD4_TCM L2
ENSG00000116717 GADD45A 551357 sc-eQTL 5.42e-01 0.0353 0.0577 0.374 CD4_TEM L2
ENSG00000142864 SERBP1 806143 sc-eQTL 6.33e-01 0.0428 0.0893 0.374 CD4_TEM L2
ENSG00000116717 GADD45A 551357 sc-eQTL 2.96e-02 0.144 0.0656 0.374 CD8_CTL L2
ENSG00000142864 SERBP1 806143 sc-eQTL 6.63e-01 -0.0393 0.0901 0.374 CD8_CTL L2
ENSG00000116717 GADD45A 551357 sc-eQTL 6.06e-02 0.104 0.0553 0.374 CD8_Naive L2
ENSG00000142864 SERBP1 806143 sc-eQTL 8.91e-01 0.00966 0.0706 0.374 CD8_Naive L2
ENSG00000116717 GADD45A 551357 sc-eQTL 8.28e-01 0.0139 0.064 0.37 CD8_TCM L2
ENSG00000142864 SERBP1 806143 sc-eQTL 3.83e-01 0.0877 0.1 0.37 CD8_TCM L2
ENSG00000116717 GADD45A 551357 sc-eQTL 7.82e-01 0.0212 0.0767 0.381 CD8_TEM L2
ENSG00000142864 SERBP1 806143 sc-eQTL 9.74e-01 0.00316 0.097 0.381 CD8_TEM L2
ENSG00000024526 DEPDC1 -260663 sc-eQTL 8.24e-01 0.00754 0.0339 0.377 MAIT L2
ENSG00000081985 IL12RB2 929194 sc-eQTL 9.40e-01 0.00699 0.0934 0.377 MAIT L2
ENSG00000116717 GADD45A 551357 sc-eQTL 1.38e-01 0.104 0.0696 0.377 MAIT L2
ENSG00000142864 SERBP1 806143 sc-eQTL 8.53e-02 -0.15 0.087 0.377 MAIT L2
ENSG00000081985 IL12RB2 929194 sc-eQTL 6.99e-01 -0.0287 0.0742 0.378 NK_CD56bright L2
ENSG00000116717 GADD45A 551357 sc-eQTL 7.73e-01 -0.0248 0.0859 0.378 NK_CD56bright L2
ENSG00000142864 SERBP1 806143 sc-eQTL 7.65e-01 -0.0265 0.0884 0.378 NK_CD56bright L2
ENSG00000081985 IL12RB2 929194 sc-eQTL 6.14e-01 0.034 0.0675 0.375 NK_CD56dim L2
ENSG00000116717 GADD45A 551357 sc-eQTL 9.77e-02 0.127 0.0764 0.375 NK_CD56dim L2
ENSG00000142864 SERBP1 806143 sc-eQTL 5.59e-01 -0.0429 0.0733 0.375 NK_CD56dim L2
ENSG00000081985 IL12RB2 929194 sc-eQTL 5.30e-01 -0.0389 0.0618 0.379 NK_HLA L2
ENSG00000116717 GADD45A 551357 sc-eQTL 2.78e-01 0.0985 0.0906 0.379 NK_HLA L2
ENSG00000142864 SERBP1 806143 sc-eQTL 8.34e-01 0.0175 0.083 0.379 NK_HLA L2
ENSG00000081985 IL12RB2 929194 sc-eQTL 1.39e-01 0.11 0.0739 0.375 NK_cytokine L2
ENSG00000116717 GADD45A 551357 sc-eQTL 7.45e-01 0.026 0.0799 0.375 NK_cytokine L2
ENSG00000142864 SERBP1 806143 sc-eQTL 8.89e-01 0.0107 0.0764 0.375 NK_cytokine L2
ENSG00000116717 GADD45A 551357 sc-eQTL 3.87e-01 0.0971 0.112 0.374 PB L2
ENSG00000142864 SERBP1 806143 sc-eQTL 4.58e-01 0.0611 0.0821 0.374 PB L2
ENSG00000024526 DEPDC1 -260663 sc-eQTL 4.88e-01 0.04 0.0576 0.37 Pro_T L2
ENSG00000081985 IL12RB2 929194 sc-eQTL 8.38e-01 0.0176 0.0863 0.37 Pro_T L2
ENSG00000116717 GADD45A 551357 sc-eQTL 7.91e-01 -0.0236 0.0888 0.37 Pro_T L2
ENSG00000142864 SERBP1 806143 sc-eQTL 5.99e-01 0.033 0.0625 0.37 Pro_T L2
ENSG00000116717 GADD45A 551357 sc-eQTL 6.73e-01 0.0299 0.0707 0.374 Treg L2
ENSG00000142864 SERBP1 806143 sc-eQTL 2.94e-01 -0.0835 0.0794 0.374 Treg L2
ENSG00000116717 GADD45A 551357 sc-eQTL 4.52e-01 -0.0766 0.102 0.376 cDC L2
ENSG00000116729 WLS 3438 sc-eQTL 6.77e-01 0.0365 0.0875 0.376 cDC L2
ENSG00000142864 SERBP1 806143 sc-eQTL 9.46e-01 -0.00551 0.0815 0.376 cDC L2
ENSG00000116717 GADD45A 551357 sc-eQTL 3.47e-01 0.0586 0.0622 0.374 cMono_IL1B L2
ENSG00000116729 WLS 3438 sc-eQTL 5.39e-01 0.0498 0.081 0.374 cMono_IL1B L2
ENSG00000142864 SERBP1 806143 sc-eQTL 3.59e-01 -0.0653 0.0711 0.374 cMono_IL1B L2
ENSG00000116717 GADD45A 551357 sc-eQTL 1.45e-01 0.116 0.0791 0.374 cMono_S100A L2
ENSG00000116729 WLS 3438 sc-eQTL 8.82e-01 -0.0111 0.0745 0.374 cMono_S100A L2
ENSG00000142864 SERBP1 806143 sc-eQTL 7.83e-01 0.022 0.0801 0.374 cMono_S100A L2
ENSG00000081985 IL12RB2 929194 sc-eQTL 2.15e-01 0.0975 0.0782 0.373 gdT L2
ENSG00000116717 GADD45A 551357 sc-eQTL 1.79e-01 0.131 0.0968 0.373 gdT L2
ENSG00000142864 SERBP1 806143 sc-eQTL 4.63e-01 0.0845 0.115 0.373 gdT L2
ENSG00000116717 GADD45A 551357 sc-eQTL 6.67e-01 0.0369 0.0859 0.38 intMono L2
ENSG00000116729 WLS 3438 sc-eQTL 1.38e-01 -0.136 0.0911 0.38 intMono L2
ENSG00000142864 SERBP1 806143 sc-eQTL 8.81e-01 0.0134 0.0891 0.38 intMono L2
ENSG00000116717 GADD45A 551357 sc-eQTL 5.41e-01 0.0563 0.092 0.373 ncMono L2
ENSG00000116729 WLS 3438 sc-eQTL 1.98e-01 -0.109 0.0841 0.373 ncMono L2
ENSG00000142864 SERBP1 806143 sc-eQTL 4.26e-01 -0.0656 0.0823 0.373 ncMono L2
ENSG00000116717 GADD45A 551357 sc-eQTL 8.02e-01 -0.0238 0.0948 0.379 pDC L2
ENSG00000116729 WLS 3438 sc-eQTL 4.12e-01 0.0651 0.0791 0.379 pDC L2
ENSG00000142864 SERBP1 806143 sc-eQTL 2.01e-02 -0.209 0.0891 0.379 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116717 GADD45A 551357 sc-eQTL 7.36e-01 -0.0261 0.0771 0.374 B_Memory LOneK1K
ENSG00000142864 SERBP1 806143 sc-eQTL 8.26e-01 0.018 0.0816 0.374 B_Memory LOneK1K
ENSG00000116717 GADD45A 551357 sc-eQTL 3.14e-01 0.0623 0.0617 0.374 B_Naive LOneK1K
ENSG00000142864 SERBP1 806143 sc-eQTL 6.98e-01 0.026 0.0671 0.374 B_Naive LOneK1K
ENSG00000116717 GADD45A 551357 sc-eQTL 1.89e-01 0.0809 0.0613 0.374 CD14_Mono LOneK1K
ENSG00000116729 WLS 3438 sc-eQTL 7.95e-01 0.019 0.0728 0.374 CD14_Mono LOneK1K
ENSG00000142864 SERBP1 806143 sc-eQTL 4.81e-01 -0.0455 0.0644 0.374 CD14_Mono LOneK1K
ENSG00000116717 GADD45A 551357 sc-eQTL 3.89e-01 0.0727 0.0842 0.377 CD16_Mono LOneK1K
ENSG00000116729 WLS 3438 sc-eQTL 1.26e-02 -0.219 0.087 0.377 CD16_Mono LOneK1K
ENSG00000142864 SERBP1 806143 sc-eQTL 7.60e-01 -0.0211 0.069 0.377 CD16_Mono LOneK1K
ENSG00000081985 IL12RB2 929194 sc-eQTL 7.66e-01 0.0193 0.0649 0.375 NK_CD56dim LOneK1K
ENSG00000116717 GADD45A 551357 sc-eQTL 4.05e-01 0.0615 0.0737 0.375 NK_CD56dim LOneK1K
ENSG00000142864 SERBP1 806143 sc-eQTL 4.72e-01 -0.0489 0.0678 0.375 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000081985 IL12RB2 929194 pQTL 0.0133 0.081 0.0327 0.0 0.0 0.372
ENSG00000116729 WLS 3438 eQTL 0.00853 0.0646 0.0245 0.0 0.00139 0.366

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116729 WLS 3438 3.49e-05 3.29e-05 6e-06 1.54e-05 5.54e-06 1.36e-05 4.36e-05 4.35e-06 2.98e-05 1.47e-05 3.73e-05 1.59e-05 4.74e-05 1.35e-05 6.78e-06 1.81e-05 1.61e-05 2.39e-05 7.56e-06 6.5e-06 1.42e-05 3.17e-05 3.09e-05 8.48e-06 4.24e-05 7.55e-06 1.33e-05 1.24e-05 3.14e-05 2.41e-05 1.95e-05 1.62e-06 2.41e-06 6.79e-06 1.11e-05 5.47e-06 2.85e-06 3.18e-06 4.48e-06 3.22e-06 1.7e-06 3.81e-05 3.38e-06 3.6e-07 2.27e-06 3.72e-06 3.97e-06 1.5e-06 1.53e-06
ENSG00000234383 \N 73468 9.43e-06 1.26e-05 9.94e-07 5.02e-06 2.03e-06 3e-06 1.03e-05 1.55e-06 8.98e-06 4.38e-06 1.05e-05 4.5e-06 1.55e-05 3.85e-06 2.19e-06 6.42e-06 4.12e-06 6.03e-06 2.64e-06 2.63e-06 3.72e-06 1.04e-05 7.13e-06 2.21e-06 1.31e-05 2.92e-06 4.33e-06 3.55e-06 9.36e-06 7.9e-06 5.07e-06 6.75e-07 7.42e-07 2.54e-06 3.15e-06 1.71e-06 1.2e-06 5.44e-07 1.64e-06 8.62e-07 3.48e-07 1.53e-05 1.09e-06 1.64e-07 5.92e-07 1.2e-06 1.13e-06 6.82e-07 5.13e-07